Last updated: 2025-05-14

Checks: 2 0

Knit directory: DigitalResearchSkillsNetwork/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version a5f07d7. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/.RData
    Ignored:    analysis/.Rhistory
    Ignored:    analysis/adit/.DS_Store
    Ignored:    plots/
    Ignored:    raw/

Untracked files:
    Untracked:  analysis/x202504_Workshop.Rmd

Unstaged changes:
    Deleted:    analysis/202504_Workshop.Rmd
    Modified:   analysis/_site.yml
    Modified:   workflow.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/202504_InFocus.Rmd) and HTML (docs/202504_InFocus.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html cff7923 DrThomasOneil 2025-05-07 Build site.
html 16a9613 DrThomasOneil 2025-04-30 Build site.
html 862d6b6 DrThomasOneil 2025-04-29 Build site.
Rmd b68287f DrThomasOneil 2025-04-29 wflow_publish(files)
html 938818e DrThomasOneil 2025-04-14 Build site.
html ed690e6 DrThomasOneil 2025-04-14 Build site.
Rmd 1e8103e DrThomasOneil 2025-04-14 wflow_publish("analysis/*.Rmd")
html cb886ef DrThomasOneil 2025-04-10 Build site.
Rmd 23f31d4 GitHub 2025-04-09 Update 202504_InFocus.Rmd
html f6c0433 YuchenLi 2025-04-09 Build site.
Rmd 04953d6 YuchenLi 2025-04-09 wflow_publish("analysis/*.Rmd")
html 8d78b0f YuchenLi 2025-04-09 Build site.
html 7421f69 DrThomasOneil 2025-04-08 Build site.
html f2d3385 DrThomasOneil 2025-03-24 update
html 517dcf9 DrThomasOneil 2025-03-24 Build site.
html 6a4432b DrThomasOneil 2025-03-24 Build site.
html 1f218f3 DrThomasOneil 2025-03-24 Build site.
html dca90e9 DrThomasOneil 2025-03-24 Build site.
html 1d1c076 DrThomasOneil 2025-03-24 Build site.
html 956ba9b DrThomasOneil 2025-03-24 Build site.
Rmd 6b72e34 DrThomasOneil 2025-03-24 wflow_publish(c("analysis/*.Rmd"))
html d600337 DrThomasOneil 2025-03-18 Build site.
html b537f69 DrThomasOneil 2025-03-18 Build site.
Rmd 2e41666 DrThomasOneil 2025-03-18 wflow_publish(c("analysis/*.Rmd"))
html b7982e9 DrThomasOneil 2025-03-16 Build site.
html fc5dd81 DrThomasOneil 2025-03-16 Build site.
html 8e1c1a3 DrThomasOneil 2025-03-16 Build site.
Rmd d75e5ae DrThomasOneil 2025-03-16 wflow_publish(c("analysis/*.Rmd"))

Flow Cytometry in R: Tools, Techniques, and Transitions

This interactive session will dive into the analytical considerations for flow cytometry, covering key factors like batch effects, transformations, compensation, and QC. We’ll explore software and R-based packages, with presentations on FuseSOM and Spectre, providing practical insights for researchers looking to expand their flow cytometry analysis beyond traditional software.

Time: Tuesday 15th April, 1-3 pm

In person: WIMR Seminar Room

Online: Zoom Link

Speakers:


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