Last updated: 2025-04-14
Checks: 2 0
Knit directory: analysis-user-group/
This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 1e8103e. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish or
wflow_git_commit). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .DS_Store
Ignored: .Rhistory
Ignored: analysis/.DS_Store
Ignored: analysis/.Rhistory
Ignored: analysis/adit/.DS_Store
Untracked files:
Untracked: analysis/adit/head_index.html
Unstaged changes:
Modified: workflow.R
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/202504_Seminar.Rmd) and
HTML (docs/202504_Seminar.html) files. If you’ve configured
a remote Git repository (see ?wflow_git_remote), click on
the hyperlinks in the table below to view the files as they were in that
past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 1e8103e | DrThomasOneil | 2025-04-14 | wflow_publish("analysis/*.Rmd") |
| html | cb886ef | DrThomasOneil | 2025-04-10 | Build site. |
| html | f6c0433 | YuchenLi | 2025-04-09 | Build site. |
| Rmd | 04953d6 | YuchenLi | 2025-04-09 | wflow_publish("analysis/*.Rmd") |
| html | 8d78b0f | YuchenLi | 2025-04-09 | Build site. |
| Rmd | adbe38b | YuchenLi | 2025-04-09 | wflow_publish("analysis/*.Rmd") |
| html | 7421f69 | DrThomasOneil | 2025-04-08 | Build site. |
| Rmd | 155c73a | DrThomasOneil | 2025-04-08 | wflow_publish("analysis/*.Rmd") |
| html | f2d3385 | DrThomasOneil | 2025-03-24 | update |
| html | 517dcf9 | DrThomasOneil | 2025-03-24 | Build site. |
| html | 6a4432b | DrThomasOneil | 2025-03-24 | Build site. |
| html | 1f218f3 | DrThomasOneil | 2025-03-24 | Build site. |
| html | dca90e9 | DrThomasOneil | 2025-03-24 | Build site. |
| html | 1d1c076 | DrThomasOneil | 2025-03-24 | Build site. |
| html | 956ba9b | DrThomasOneil | 2025-03-24 | Build site. |
| Rmd | 6b72e34 | DrThomasOneil | 2025-03-24 | wflow_publish(c("analysis/*.Rmd")) |
| html | d600337 | DrThomasOneil | 2025-03-18 | Build site. |
| html | b537f69 | DrThomasOneil | 2025-03-18 | Build site. |
| html | b7982e9 | DrThomasOneil | 2025-03-16 | Build site. |
| html | fc5dd81 | DrThomasOneil | 2025-03-16 | Build site. |
| html | 8e1c1a3 | DrThomasOneil | 2025-03-16 | Build site. |
| Rmd | d75e5ae | DrThomasOneil | 2025-03-16 | wflow_publish(c("analysis/*.Rmd")) |
When to Stick with Software and When to Code for Flow Cytometry Analysis
Flow cytometry analysis is often performed using intuitive, UI-based software like FlowJo, but as datasets grow in complexity, programming tools like R offer powerful alternatives. This seminar will contrast standard software workflows with programming-based approaches, highlighting where GUI-based tools excel and where scripting can unlock deeper insights. We’ll explore the strengths and limitations of both, covering practical examples, key decision points, and a case study where coding provided the flexibility needed to push analysis beyond software constraints.
Speakers: Suat Dervish, Nicole Fewings
