Last updated: 2023-06-20
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Knit directory: mi_spatialomics/
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sessionInfo()
R version 4.2.3 (2023-03-15)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.4
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] ggsci_3.0.0 cowplot_1.1.1 here_1.0.1 SeuratObject_4.1.3
[5] Seurat_4.3.0 lubridate_1.9.2 forcats_1.0.0 stringr_1.5.0
[9] dplyr_1.1.2 purrr_1.0.1 readr_2.1.4 tidyr_1.3.0
[13] tibble_3.2.1 ggplot2_3.4.2 tidyverse_2.0.0 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] Rtsne_0.16 colorspace_2.1-0 deldir_1.0-9
[4] ellipsis_0.3.2 ggridges_0.5.4 rprojroot_2.0.3
[7] fs_1.6.2 spatstat.data_3.0-1 rstudioapi_0.14
[10] leiden_0.4.3 listenv_0.9.0 ggrepel_0.9.3
[13] fansi_1.0.4 codetools_0.2-19 splines_4.2.3
[16] cachem_1.0.8 knitr_1.42 polyclip_1.10-4
[19] jsonlite_1.8.4 ica_1.0-3 cluster_2.1.4
[22] png_0.1-8 uwot_0.1.14 spatstat.sparse_3.0-1
[25] sctransform_0.3.5 shiny_1.7.4 BiocManager_1.30.21
[28] compiler_4.2.3 httr_1.4.6 Matrix_1.5-3
[31] fastmap_1.1.1 lazyeval_0.2.2 cli_3.6.1
[34] later_1.3.1 htmltools_0.5.5 tools_4.2.3
[37] igraph_1.4.3 gtable_0.3.3 glue_1.6.2
[40] reshape2_1.4.4 RANN_2.6.1 Rcpp_1.0.10
[43] scattermore_1.2 jquerylib_0.1.4 vctrs_0.6.2
[46] nlme_3.1-162 spatstat.explore_3.2-1 progressr_0.13.0
[49] lmtest_0.9-40 spatstat.random_3.1-5 xfun_0.39
[52] globals_0.16.2 ps_1.7.4 timechange_0.2.0
[55] mime_0.12 miniUI_0.1.1.1 lifecycle_1.0.3
[58] irlba_2.3.5.1 renv_0.17.3 goftest_1.2-3
[61] future_1.32.0 getPass_0.2-2 MASS_7.3-58.2
[64] zoo_1.8-12 scales_1.2.1 spatstat.utils_3.0-3
[67] hms_1.1.3 promises_1.2.0.1 parallel_4.2.3
[70] RColorBrewer_1.1-3 yaml_2.3.7 gridExtra_2.3
[73] reticulate_1.30 pbapply_1.7-0 sass_0.4.6
[76] stringi_1.7.12 rlang_1.1.1 pkgconfig_2.0.3
[79] matrixStats_1.0.0 evaluate_0.21 lattice_0.20-45
[82] tensor_1.5 ROCR_1.0-11 patchwork_1.1.2
[85] htmlwidgets_1.6.2 processx_3.8.0 tidyselect_1.2.0
[88] parallelly_1.36.0 RcppAnnoy_0.0.20 plyr_1.8.8
[91] magrittr_2.0.3 R6_2.5.1 generics_0.1.3
[94] DBI_1.1.3 pillar_1.9.0 whisker_0.4.1
[97] withr_2.5.0 fitdistrplus_1.1-11 abind_1.4-5
[100] survival_3.5-3 sp_1.6-1 future.apply_1.11.0
[103] KernSmooth_2.23-20 utf8_1.2.3 spatstat.geom_3.2-1
[106] plotly_4.10.2 tzdb_0.4.0 rmarkdown_2.21
[109] grid_4.2.3 data.table_1.14.8 callr_3.7.3
[112] git2r_0.32.0 digest_0.6.31 xtable_1.8-4
[115] httpuv_1.6.11 munsell_0.5.0 viridisLite_0.4.2
[118] bslib_0.4.2