Differential Gene Expression with DESeq2 and edgeR

workflowr

• Summary
• Checks
• Past versions

Last updated: 2024-11-01

Checks: 6 1

Knit directory: locust-comparative-genomics/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

---

R Markdown file: uncommitted changes

The R Markdown is untracked by Git. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20221025)

The command set.seed(20221025) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: ba35b82

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version ba35b82. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .DS_Store
    Ignored:    .RData
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/.Rhistory
    Ignored:    analysis/site_libs/
    Ignored:    data/.DS_Store
    Ignored:    data/.Rhistory
    Ignored:    data/list/.DS_Store
    Ignored:    figures/
    Ignored:    tables/

Untracked files:
    Untracked:  analysis/3_deg-analysis-DEseq2.Rmd
    Untracked:  analysis/3_deg-analysis-edgeR.Rmd
    Untracked:  analysis/3_deseq2-results.Rmd
    Untracked:  data/03-americana-DESeq2/
    Untracked:  data/03-cancellata-DESeq2/
    Untracked:  data/03-cubense-DESeq2/
    Untracked:  data/03-gregaria-DESeq2/
    Untracked:  data/03-nitens-DESeq2/
    Untracked:  data/03-piceifrons-DESeq2/
    Untracked:  data/OLD/
    Untracked:  data/annotation/
    Untracked:  data/list/Head_americana_nooutliers.txt
    Untracked:  data/list/Head_cancellata_nooutliers.txt
    Untracked:  data/list/Head_cubense_nooutliers.txt
    Untracked:  data/list/Head_gregaria.txt
    Untracked:  data/list/Head_nitens_nooutliers.txt
    Untracked:  data/list/Head_piceifrons_nooutliers.txt
    Untracked:  data/list/Thorax_americana_nooutliers.txt
    Untracked:  data/list/Thorax_cancellata_nooutliers.txt
    Untracked:  data/list/Thorax_cubense_nooutliers.txt
    Untracked:  data/list/Thorax_gregaria_nooutliers.txt
    Untracked:  data/list/Thorax_nitens_nooutliers.txt
    Untracked:  data/list/Thorax_piceifrons.txt
    Untracked:  data/list/excluded_loci/

Unstaged changes:
    Modified:   analysis/2_orthologs-prediction.Rmd
    Modified:   analysis/3_deg-analysis.Rmd
    Modified:   analysis/3_rna-mapping.Rmd
    Modified:   analysis/3_seq-data-qc.Rmd
    Modified:   analysis/_site.yml
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/SAMER_SAMER_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/SAMER_SAMER_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/SAMER_SGRE_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/SAMER_SGRE_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/SCANC_SCANC_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/SCANC_SCANC_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/SCANC_SGREG_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/SCANC_SGREG_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/SCUBE_SCUBE_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/SCUBE_SCUBE_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/SCUBE_SGREG_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/SCUBE_SGREG_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/SGREG_SGREG_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/SGREG_SGREG_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/SNITE_SGREG_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/SNITE_SGREG_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/SNITE_SNITE_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/SNITE_SNITE_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/SPICE_SGREG_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/SPICE_SGREG_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/SPICE_SPICE_HEAD_STARnew_features_report.html
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/SPICE_SPICE_THORAX_STARnew_features_report.html
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/MAPlot.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/PCA.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/barplotNull.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/barplotTotal.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/cluster.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/countsBoxplots.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/densplot.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/diagSizeFactorsHist.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/diagSizeFactorsTC.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/dispersionsPlot.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/majSeq.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/pairwiseScatter.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/rawpHist.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/figures/volcanoPlot.png
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/tables/IsolatedvsCrowded.complete.txt
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/tables/IsolatedvsCrowded.down.txt
    Deleted:    data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/tables/IsolatedvsCrowded.up.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_SRR10806996_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/counts_4thcol/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_SRR10806996_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_SRR10806996_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_SRR10806996_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_SRR10806996_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_SRR10806996_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_SRR10806996_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_SRR10806996_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/counts_4thcol/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/americana/featurecounts/finalcounts/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/counts_4thcol/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815241_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815242_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815243_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815244_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815245_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815246_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815247_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815248_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815249_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_G_Crd_SRR11815250_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815252_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815253_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815254_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815255_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815256_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815257_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815258_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815259_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815260_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/SAMER_S_Iso_SRR11815263_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815241_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815242_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815243_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815244_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815245_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815246_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815247_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815248_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815249_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_G_Crd_SRR11815250_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815252_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815253_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815254_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815255_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815256_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815257_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815258_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815259_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815260_counts.txt
    Deleted:    data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SAMER_S_Iso_SRR11815263_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/counts_4thcol/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/cancellata/featurecounts/finalcounts/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/counts_4thcol/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648042_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648043_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648048_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648049_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648056_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648057_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648058_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648059_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648060_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_G_Crd_SRR17648061_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648044_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648045_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648046_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648047_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648050_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648051_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648052_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648053_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648054_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/SCANC_S_Iso_SRR17648055_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648042_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648043_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648048_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648049_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648056_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648057_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648058_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648059_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648060_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_G_Crd_SRR17648061_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648044_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648045_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648046_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648047_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648050_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648051_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648052_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648053_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648054_counts.txt
    Deleted:    data/cancellata/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SCANC_S_Iso_SRR17648055_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815219_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815220_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815221_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815222_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815223_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815224_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815225_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815226_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815227_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815228_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815230_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815231_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815232_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815233_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815234_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815235_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815236_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815237_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815238_counts.txt
    Deleted:    data/cubense/deg_counts/STAR/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815239_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815219_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815220_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815221_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815222_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815223_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815224_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815225_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815226_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815227_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_G_Crd_SRR11815228_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815230_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815231_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815232_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815233_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815234_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815235_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815236_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815237_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815238_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/counts_4thcol/SSCUB_S_Iso_SRR11815239_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815219_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815219_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815220_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815220_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815221_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815221_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815222_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815222_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815223_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815223_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815224_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815224_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815225_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815225_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815226_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815226_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815227_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815227_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815228_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_G_Crd_SRR11815228_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815230_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815230_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815231_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815231_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815232_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815232_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815233_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815233_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815234_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815234_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815235_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815235_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815236_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815236_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815237_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815237_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815238_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815238_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815239_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/SSCUB_S_Iso_SRR11815239_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815219_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815220_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815221_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815222_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815223_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815224_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815225_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815226_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815227_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815228_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815230_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815231_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815232_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815233_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815234_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815235_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815236_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815237_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815238_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/cubense/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815239_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815219_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815220_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815221_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815222_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815223_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815224_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815225_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815226_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815227_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_G_Crd_SRR11815228_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815230_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815231_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815233_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815234_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815235_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815236_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815237_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815238_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/counts_4thcol/SSCUB_S_Iso_SRR11815239_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815219_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815219_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815220_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815220_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815221_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815221_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815222_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815222_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815223_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815223_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815224_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815224_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815225_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815225_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815226_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815226_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815227_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815227_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815228_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_G_Crd_SRR11815228_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815230_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815230_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815231_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815231_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815232_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815232_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815233_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815233_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815234_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815234_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815235_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815235_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815236_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815236_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815237_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815237_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815238_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815238_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815239_Aligned.sortedByCoord.out.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/SSCUB_S_Iso_SRR11815239_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815219_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815220_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815221_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815222_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815223_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815224_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815225_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815226_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815227_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_G_Crd_SRR11815228_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815230_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815231_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815232_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815233_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815234_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815235_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815236_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815237_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815238_counts.txt
    Deleted:    data/cubense/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SSCUB_S_Iso_SRR11815239_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-HEAD-ISO-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGRE-THOX-ISO-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR018507_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124537_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124538_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124539_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124540_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124541_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124542_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124543_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_DRR124544_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR15423963_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR15423964_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR15423965_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR15423966_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR6315672_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708070_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708071_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708072_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708073_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708074_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708075_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708076_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708077_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708078_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708079_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708080_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708081_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708082_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708083_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708084_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708085_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708086_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708087_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708088_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708089_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708090_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708091_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708092_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_G_Crd_SRR8708093_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Crd_DRR124533_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Crd_DRR124534_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Crd_DRR124535_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Crd_DRR124536_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Iso_DRR124528_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Iso_DRR124529_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Iso_DRR124530_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Iso_DRR124531_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Iso_DRR124532_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/counts_4thcol/SGREG_S_Iso_SRR6315673_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-CRD-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-HEAD-ISO-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-CRD-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGRE-THOX-ISO-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR018507_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR018507_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124537_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124537_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124538_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124538_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124539_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124539_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124540_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124540_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124541_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124541_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124542_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124542_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124543_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124543_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124544_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_DRR124544_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423963_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423963_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423964_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423964_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423965_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423965_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423966_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR15423966_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR6315672_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR6315672_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708070_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708070_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708071_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708071_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708080_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708080_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708081_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708081_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708082_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708082_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708083_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_G_Crd_SRR8708083_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124533_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124533_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124534_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124534_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124535_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124535_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124536_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Crd_DRR124536_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124528_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124528_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124529_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124529_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124530_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124530_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124531_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124531_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124532_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_DRR124532_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_SRR6315673_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/SGREG_S_Iso_SRR6315673_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR018507_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124537_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124538_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124539_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124540_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124541_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124542_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124543_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_DRR124544_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR15423963_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR15423964_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR15423965_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR15423966_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR6315672_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR8708070_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR8708071_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR8708080_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR8708081_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR8708082_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_G_Crd_SRR8708083_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Crd_DRR124533_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Crd_DRR124534_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Crd_DRR124535_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Crd_DRR124536_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Iso_DRR124528_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Iso_DRR124529_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Iso_DRR124530_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Iso_DRR124531_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Iso_DRR124532_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR/gregaria/featurecounts/finalcounts/SGREG_S_Iso_SRR6315673_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-HEAD-ISO-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/counts_4thcol/SGRE-THOX-ISO-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-CRD-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-HEAD-ISO-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-CRD-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-1_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-1_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-2_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-2_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-3_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-3_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-4_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-4_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-5_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-5_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-6_Aligned.sortedByCoord.out.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/SGRE-THOX-ISO-6_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-HEAD-ISO-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-CRD-6_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-1_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-2_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-3_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-4_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-5_counts.txt
    Deleted:    data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SGRE-THOX-ISO-6_counts.txt
    Deleted:    data/list/HeadSAMER_nooutliers.txt
    Deleted:    data/list/HeadSCANC_nooutliers.txt
    Deleted:    data/list/HeadSCUBE_nooutliers.txt
    Deleted:    data/list/HeadSGREG.txt
    Deleted:    data/list/HeadSNITE_nooutliers.txt
    Deleted:    data/list/HeadSPICE_nooutliers.txt
    Deleted:    data/list/ThoraxSAMER_nooutliers.txt
    Deleted:    data/list/ThoraxSCANC_nooutliers.txt
    Deleted:    data/list/ThoraxSCUBE_nooutliers.txt
    Deleted:    data/list/ThoraxSGREG_nooutliers.txt
    Deleted:    data/list/ThoraxSNITE_nooutliers.txt
    Deleted:    data/list/ThoraxSPICE.txt
    Deleted:    data/list/americana_lncrna_list.txt
    Deleted:    data/list/americana_rrna_list.txt
    Deleted:    data/list/cancellata_lncrna_list.txt
    Deleted:    data/list/cancellata_rrna_list.txt
    Deleted:    data/list/cubense_lncrna_list.txt
    Deleted:    data/list/cubense_rrna_list.txt
    Deleted:    data/list/gregaria_lncrna_list.txt
    Deleted:    data/list/gregaria_rrna_list.txt
    Deleted:    data/list/nitens_lncrna_list.txt
    Deleted:    data/list/nitens_rrna_list.txt
    Deleted:    data/list/piceifrons_lncrna_list.txt
    Deleted:    data/list/piceifrons_rrna_list.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815197_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815198_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815199_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815200_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815201_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815202_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815203_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815204_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815205_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815206_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815208_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815209_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815210_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815211_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815212_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815213_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815214_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815215_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815216_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815217_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815197_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815198_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815199_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815200_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815201_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815202_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815203_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815204_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815205_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_G_Crd_SRR11815206_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815208_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815209_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815210_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815211_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815212_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815213_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815214_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815215_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815216_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/counts_4thcol/SNITE_S_Iso_SRR11815217_counts.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815197_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815198_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815199_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815200_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815202_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815203_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815204_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815205_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_G_Crd_SRR11815206_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815208_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815209_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815210_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815212_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815213_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815214_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815215_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815216_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/counts_4thcol/SNITE_S_Iso_SRR11815217_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815197_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815198_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815199_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815200_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815201_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815202_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815203_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815204_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815205_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_G_Crd_SRR11815206_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815208_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815209_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815210_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815211_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815212_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815213_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815214_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815215_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815216_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SNITE_S_Iso_SRR11815217_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815197_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815198_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815199_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815200_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815201_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815202_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815203_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815204_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815205_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_G_Crd_SRR11815206_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815208_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815209_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815210_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815211_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815212_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815213_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815214_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815215_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815216_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/counts_4thcol/SNITE_S_Iso_SRR11815217_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815197_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815198_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815199_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815200_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815201_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815202_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815203_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815204_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815205_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_G_Crd_SRR11815206_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815208_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815209_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815210_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815211_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815212_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815213_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815214_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815215_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815216_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/SNITE_S_Iso_SRR11815217_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815197_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815198_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815199_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815200_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815201_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815202_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815203_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815204_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815205_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_G_Crd_SRR11815206_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815208_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815209_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815210_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815211_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815212_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815213_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815214_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815215_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815216_counts.txt
    Deleted:    data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/finalcounts/SNITE_S_Iso_SRR11815217_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/counts_4thcol/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/counts_4thcol/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815262_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815264_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815265_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815266_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815267_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815268_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815269_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815270_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815271_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_G_Crd_SRR11815272_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815195_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815196_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815207_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815218_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815229_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815240_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815251_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815261_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815273_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/SPICE_S_Iso_SRR11815274_Aligned.sortedByCoord.out.txt.summary
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815262_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815264_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815265_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815266_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815267_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815268_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815269_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815270_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815271_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_G_Crd_SRR11815272_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815195_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815196_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815207_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815218_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815229_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815240_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815251_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815261_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815273_counts.txt
    Deleted:    data/piceifrons/deg_counts/STAR_newparams/piceifrons/featurecounts/finalcounts/SPICE_S_Iso_SRR11815274_counts.txt
    Deleted:    data/venn_diagramm_down_head.png
    Deleted:    data/venn_diagramm_down_thorax.png
    Deleted:    data/venn_diagramm_up_head.png
    Deleted:    data/venn_diagramm_up_thorax.png

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

There are no past versions. Publish this analysis with wflow_publish() to start tracking its development.

---

3. edgeR analysis using STAR input

We followed partially the comprehensive tutorial for edgeR.

3.1. Load libraries

We start by loading all the required R packages.

#(install first from CRAN or Bioconductor)
library("knitr")
library("rmdformats")
library("tidyverse")
library("DT")  # for making interactive search table
library("plotly") # for interactive plots
library("ggthemes") # for theme_calc
library("reshape2")
library("edgeR")
library("data.table")
library("apeglm")
library("ggpubr")
library("ggplot2")
library("ggrepel")
library("EnhancedVolcano")
library("SARTools")
library("pheatmap")

3.2. Lazy DEG analysis

Here we will be using the html report function of edgeR to export all the results, however, the option to do it step by step will be also provided below.

Set parameters

We need to specify the path of our working directories, where are located our gene counts files and where the .html report will be created:

## PARAMETERS for running the script
homeDir <- "/Users/alphamanae/Documents/GitHub/locust-comparative-genomics"
workDir <- "/Users/alphamanae/Documents/GitHub/locust-comparative-genomics/data"        # Working directory

# path to the directory containing raw counts files
rawDir <- "/Users/alphamanae/Documents/GitHub/locust-comparative-genomics/data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/" 

## Details to create the html report
projectName <- "SPECIESXXX_HEAD"                        # name of the project
author <- "Maeva TECHER"                        # author of the statistical analysis/report

## Create all the needed directories for the html report
setwd(workDir)
Dirname <- paste("edgeR_", projectName, sep = "")
dir.create(Dirname)
setwd(Dirname)
workDir_DEseq2 <- getwd()

We then define the parameters that we will be running with edgeR:

## PARAMETERS for running EdgeR
tresh_logfold <- 1                            # Treshold for log2(foldchange) in final DE-files
tresh_padj <- 0.05                            # Treshold for adjusted p-valued in final DE-files
alpha_edgeR <- 0.05                   # threshold of statistical significance
pAdjustMethod_edgeR <- "BH"           # p-value adjustment method: "BH" (default) or "BY"
featuresToRemove <- c(NULL)           # names of the features to be removed, NULL if none or if using Idxstats
varInt <- "RearingCondition"          # factor of interest
condRef <- "Isolated"                 # reference biological condition
batch <- NULL                         # blocking factor: NULL (default) or "batch" for example  
cpmCutoff <- 1                        # counts-per-million cut-off to filter low counts
gene.selection <- "pairwise"          # selection of the features in MDSPlot
normalizationMethod <- "TMM"          # normalization method: "TMM" (default), "RLE" (DESeq) or "upperquartile"


# Path and name of targetfile containing conditions and file names
targetFile <- "/Users/alphamanae/Documents/GitHub/locust-comparative-genomics/data/list/HeadSPECIESXXX.txt"           
colors <- c("#B31B21", "#1465AC", "green3", "orange") 

We then import the metadata table and format it as such as there is no error downstream.

Here our targetFile is our metadata which should have a column for each: sample ID, the file name (exactly the same as in your folder, be careful with ” ” or “_”) and the conditions.

If everything has been loaded properly, the next chunk of code should not show any warning and we can simply proceed to the actual DEG analysis.

# checking parameters
setwd(workDir_edgeR)
checkParameters.edgeR(projectName=projectName,author=author,targetFile=targetFile,
                      rawDir=rawDir,featuresToRemove=featuresToRemove,varInt=varInt,
                      condRef=condRef,batch=batch,alpha=alpha_edgeR,pAdjustMethod=pAdjustMethod_edgeR,
                      cpmCutoff=cpmCutoff,gene.selection=gene.selection,
                      normalizationMethod=normalizationMethod,colors=colors)

Create the HTML report

Here if you just want a quick report without being able to tailor step by step, you can use the code below and obtain several graphs and details for your DEG analysis.

## import the sample sheet that indicates Rearing Conditions and Tissue origins
setwd(workDir_edgeR)

# loading target file
target <- loadTargetFile(targetFile=targetFile, varInt=varInt, condRef=condRef, batch=batch)

# loading counts
counts <- loadCountData(target=target, rawDir=rawDir, featuresToRemove=featuresToRemove)

# description plots
majSequences <- descriptionPlots(counts=counts, group=target[,varInt], col=colors)

# edgeR analysis
out.edgeR <- run.edgeR(counts=counts, target=target, varInt=varInt, condRef=condRef,
                       batch=batch, cpmCutoff=cpmCutoff, normalizationMethod=normalizationMethod,
                       pAdjustMethod=pAdjustMethod_edgeR)

# MDS + clustering
exploreCounts(object=out.edgeR$dge, group=target[,varInt], gene.selection=gene.selection, col=colors)

# summary of the analysis (boxplots, dispersions, export table, nDiffTotal, histograms, MA plot)
summaryResults <- summarizeResults.edgeR(out.edgeR, group=target[,varInt], counts=counts, alpha=alpha_edgeR, col=colors)

# generating HTML report
writeReport.edgeR(target=target, counts=counts, out.edgeR=out.edgeR, summaryResults=summaryResults,
                  majSequences=majSequences, workDir=workDir_edgeR, projectName=projectName, author=author,
                  targetFile=targetFile, rawDir=rawDir, featuresToRemove=featuresToRemove, varInt=varInt,
                  condRef=condRef, batch=batch, alpha=alpha_edgeR, pAdjustMethod=pAdjustMethod_edgeR, colors=colors,
                  gene.selection=gene.selection, normalizationMethod=normalizationMethod, cpmCutoff =cpmCutoff)

3.3. Step-by-step DEG analysis

Set parameters

Here we only need to specify the path of our raw counts and metadata files.

## PARAMETERS for running the script
homeDir <- "/Users/alphamanae/Documents/GitHub/locust-comparative-genomics"
workDir <- "/Users/alphamanae/Documents/GitHub/locust-comparative-genomics/data"        # Working directory

# path to the directory containing raw counts files
rawDir <- "/Users/alphamanae/Documents/GitHub/locust-comparative-genomics/data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/finalcounts/" 

We then define the parameters that we will be running with edgeR:

## PARAMETERS for running DEseq2
tresh_logfold <- 1                            # Treshold for log2(foldchange) in final DE-files
tresh_padj <- 0.05                            # Treshold for adjusted p-valued in final DE-files
alpha_DEseq2 <- 0.05                  # threshold of statistical significance
pAdjustMethod_DEseq2 <- "BH"          # p-value adjustment method: "BH" (default) or "BY"
featuresToRemove <- c(NULL)           # names of the features to be removed, NULL if none or if using Idxstats
varInt <- "RearingCondition"          # factor of interest
condRef <- "Crowded"                 # reference biological condition
batch <- NULL                         # blocking factor: NULL (default) or "batch" for example  
fitType <- "parametric"               # mean-variance relationship: "parametric" (default) or "local"
cooksCutoff <- TRUE                   # TRUE/FALSE to perform the outliers detection (default is TRUE)
independentFiltering <- TRUE          # TRUE/FALSE to perform independent filtering (default is TRUE)
typeTrans <- "rlog"                     # transformation for PCA/clustering: "VST" or "rlog"
locfunc <- "median"

We then import the metadata table and load the count files.

# loading target file
target <- loadTargetFile(targetFile=targetFile, varInt=varInt, condRef=condRef, batch=batch)

# loading counts
counts <- loadCountData(target=target, rawDir=rawDir, featuresToRemove=featuresToRemove)

Filtering and normalizing

## Create DGEList data class
musashi <- DGEList(counts = counts, group = target[,varInt])
musashi

## Filter out the genes with low counts
keep <- filterByExpr(y = musashi)
musashi <- musashi[keep, , keep.lib.sizes=FALSE]
musashi

## Normalization and effective library sizes
musashi <- calcNormFactors(object = musashi)
musashi

Run the model fit with EdgeR

## Dispersion estimation
musashi <- estimateDisp(y = musashi)

## Testing for differential gene expression
kojiro <- exactTest(object = musashi)

## Extract the table with adjusted p-values (FDR = padj for DEseq2)
top_degs = topTags(object = kojiro, n = "Inf")
top_degs

## Obtain the summary
summary(decideTests(object = kojiro, lfc = 1))

## Export the table
#write.csv(as.data.frame(top_degs), file="condition_infected_vs_control_dge.csv")

3.4. Visualizing and exploring the results

Volcano plot

sakaki <- as.data.frame(top_degs)

keyvals <-ifelse( 
  sakaki$logFC >= 1 & sakaki$FDR <= 0.05, '#B31B21', 
  ifelse(sakaki$logFC <= -1 & sakaki$FDR <= 0.05, '#1465AC', 'darkgray')) 

keyvals[is.na(keyvals)] <-'darkgray' 
names(keyvals)[keyvals == "#B31B21"] <-'Upregulated' 
names(keyvals)[keyvals == "#1465AC"] <-'Downregulated' 
names(keyvals)[keyvals == 'darkgray'] <-'NS'

EnhancedVolcano(sakaki,
                lab = rownames(sakaki),
                x = 'logFC',
                y = 'FDR',
                pCutoff = 0.05,
                FCcutoff = 1,
                pointSize = 3,
                labSize = 4,
                colAlpha = 4/5,
                colCustom = keyvals,
                drawConnectors = TRUE)

MA plot

plotMD(object = kojiro, p.value = 0.05)

4. Combining DESeq2 and edgeR results

To do… by hand for now

Session information

sessionInfo()

R version 4.4.1 (2024-06-14)
Platform: aarch64-apple-darwin20
Running under: macOS Sonoma 14.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Asia/Tokyo
tzcode source: internal

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] pheatmap_1.0.12             SARTools_1.8.1             
 [3] kableExtra_1.4.0            ashr_2.2-63                
 [5] DESeq2_1.44.0               SummarizedExperiment_1.34.0
 [7] Biobase_2.64.0              MatrixGenerics_1.16.0      
 [9] matrixStats_1.4.1           GenomicRanges_1.56.2       
[11] GenomeInfoDb_1.40.1         IRanges_2.38.1             
[13] S4Vectors_0.42.1            BiocGenerics_0.50.0        
[15] EnhancedVolcano_1.22.0      ggrepel_0.9.6              
[17] ggpubr_0.6.0                apeglm_1.26.1              
[19] data.table_1.16.2           edgeR_4.2.2                
[21] limma_3.60.6                reshape2_1.4.4             
[23] ggthemes_5.1.0              plotly_4.10.4              
[25] DT_0.33                     lubridate_1.9.3            
[27] forcats_1.0.0               stringr_1.5.1              
[29] dplyr_1.1.4                 purrr_1.0.2                
[31] readr_2.1.5                 tidyr_1.3.1                
[33] tibble_3.2.1                ggplot2_3.5.1              
[35] tidyverse_2.0.0             rmdformats_1.0.4           
[37] knitr_1.48                 

loaded via a namespace (and not attached):
  [1] RColorBrewer_1.1-3      ggdendro_0.2.0          rstudioapi_0.17.1      
  [4] jsonlite_1.8.9          magrittr_2.0.3          rmarkdown_2.28         
  [7] fs_1.6.5                zlibbioc_1.50.0         vctrs_0.6.5            
 [10] memoise_2.0.1           SQUAREM_2021.1          rstatix_0.7.2          
 [13] mixsqp_0.3-54           htmltools_0.5.8.1       S4Arrays_1.4.1         
 [16] truncnorm_1.0-9         broom_1.0.7             SparseArray_1.4.8      
 [19] Formula_1.2-5           sass_0.4.9              bslib_0.8.0            
 [22] htmlwidgets_1.6.4       plyr_1.8.9              cachem_1.1.0           
 [25] lifecycle_1.0.4         pkgconfig_2.0.3         Matrix_1.7-1           
 [28] R6_2.5.1                fastmap_1.2.0           GenomeInfoDbData_1.2.12
 [31] digest_0.6.37           numDeriv_2016.8-1.1     colorspace_2.1-1       
 [34] GGally_2.2.1            AnnotationDbi_1.66.0    rprojroot_2.0.4        
 [37] irlba_2.3.5.1           RSQLite_2.3.7           invgamma_1.1           
 [40] fansi_1.0.6             timechange_0.3.0        httr_1.4.7             
 [43] abind_1.4-8             compiler_4.4.1          bit64_4.5.2            
 [46] withr_3.0.2             backports_1.5.0         BiocParallel_1.38.0    
 [49] DBI_1.2.3               carData_3.0-5           ggstats_0.7.0          
 [52] ggsignif_0.6.4          MASS_7.3-61             DelayedArray_0.30.1    
 [55] tools_4.4.1             httpuv_1.6.15           glue_1.8.0             
 [58] promises_1.3.0          grid_4.4.1              generics_0.1.3         
 [61] gtable_0.3.6            tzdb_0.4.0              hms_1.1.3              
 [64] xml2_1.3.6              car_3.1-3               utf8_1.2.4             
 [67] XVector_0.44.0          pillar_1.9.0            emdbook_1.3.13         
 [70] genefilter_1.86.0       later_1.3.2             splines_4.4.1          
 [73] lattice_0.22-6          survival_3.7-0          bit_4.5.0              
 [76] annotate_1.82.0         tidyselect_1.2.1        locfit_1.5-9.10        
 [79] Biostrings_2.72.1       git2r_0.35.0            gridExtra_2.3          
 [82] bookdown_0.41           svglite_2.1.3           xfun_0.49              
 [85] statmod_1.5.0           stringi_1.8.4           UCSC.utils_1.0.0       
 [88] workflowr_1.7.1         lazyeval_0.2.2          yaml_2.3.10            
 [91] evaluate_1.0.1          codetools_0.2-20        bbmle_1.0.25.1         
 [94] cli_3.6.3               xtable_1.8-4            systemfonts_1.1.0      
 [97] munsell_0.5.1           jquerylib_0.1.4         Rcpp_1.0.13            
[100] png_0.1-8               coda_0.19-4.1           XML_3.99-0.17          
[103] bdsmatrix_1.3-7         parallel_4.4.1          blob_1.2.4             
[106] viridisLite_0.4.2       mvtnorm_1.3-1           scales_1.3.0           
[109] crayon_1.5.3            rlang_1.1.4             KEGGREST_1.44.1