QTL Analysis - rz transformed rz.age [ICI vs EOI]

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Genome-wide scan

Last updated: 2022-02-11

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Knit directory: Serreze-T1D_Workflow/

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Rmd	bd913d6	Belinda Cornes	2022-02-11	QTL Mapping after snp qc

Loading Data

load("data/gm_allqc_4.batches.RData")

#gm_allqc
gm=gm_allqc
gm

Object of class cross2 (crosstype "bc")

Total individuals               188
No. genotyped individuals       188
No. phenotyped individuals      188
No. with both geno & pheno      188

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and eoi group status
miceinfo <- gm$covar[gm$covar$group == "EOI" | gm$covar$group == "ICI",]
table(miceinfo$group)


EOI ICI 
 69  92

mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm

Object of class cross2 (crosstype "bc")

Total individuals               161
No. genotyped individuals       161
No. phenotyped individuals      161
No. with both geno & pheno      161

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

table(gm$covar$group)


EOI ICI 
 69  92

#pr.qc <- pr
#for (i in 1:20){pr.qc[[i]] = pr.qc[[i]][mice.ids,,]}

#bin_pheno <- NULL
#bin_pheno$EOI <- ifelse(gm$covar$group == "EOI", 1, 0)
#bin_pheno$ICI <- ifelse(gm$covar$group == "ICI", 1, 0)
#bin_pheno <- as.data.frame(bin_pheno)
#rownames(bin_pheno) <- rownames(gm$covar)

covars <- read_csv("data/covar_cleaned_ici.vs.eoi.csv")
nrow(covars)

[1] 161

table(covars$group)


EOI ICI 
 69  92

query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")


##dropping monomorphic markers within the dataset

g <- do.call("cbind", gm$geno)

gf_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))/sum(a != 0)))
#gn_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))))

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]

count <- rowSums(gf_mar ==0)
low_freq_df <- merge(as.data.frame(gf_mar),as.data.frame(count), by="row.names",all=T)
low_freq_df[is.na(low_freq_df)] <- ''
low_freq_df <- low_freq_df[low_freq_df$count == 1,]
rownames(low_freq_df) <- low_freq_df$Row.names

low_freq <- find_markerpos(gm, rownames(low_freq_df))
low_freq$id <- rownames(low_freq)

nrow(low_freq)

[1] 89667

low_freq_bad <- merge(low_freq,low_freq_df, by="row.names",all=T)
names(low_freq_bad)[1] <- c("marker")

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]
MAF <- apply(gf_mar, 1, function(x) min(x))
MAF <- as.data.frame(MAF)
MAF$index <- 1:nrow(gf_mar)
gf_mar_maf <- merge(gf_mar,as.data.frame(MAF), by="row.names")
gf_mar_maf <- gf_mar_maf[order(gf_mar_maf$index),]

gfmar <- NULL
gfmar$gfmar_mar_0 <- sum(gf_mar_maf$MAF==0)
gfmar$gfmar_mar_1 <- sum(gf_mar_maf$MAF< 0.01)
gfmar$gfmar_mar_5 <- sum(gf_mar_maf$MAF< 0.05)
gfmar$gfmar_mar_10 <- sum(gf_mar_maf$MAF< 0.10)
gfmar$gfmar_mar_15 <- sum(gf_mar_maf$MAF< 0.15)
gfmar$gfmar_mar_25 <- sum(gf_mar_maf$MAF< 0.25)
gfmar$gfmar_mar_50 <- sum(gf_mar_maf$MAF< 0.50)
gfmar$total_snps <- nrow(as.data.frame(gf_mar_maf))

gfmar <- t(as.data.frame(gfmar))
gfmar <- as.data.frame(gfmar)
gfmar$count <- gfmar$V1

gfmar[c(2)] %>%
  kable(escape = F,align = c("ccccccccc"),linesep ="\\hline") %>%
  kable_styling(full_width = F) %>%
  kable_styling("striped", full_width = F)  %>%
  row_spec(8 ,bold=T,color= "white",background = "black")

	count
gfmar_mar_0	89667
gfmar_mar_1	92615
gfmar_mar_5	99045
gfmar_mar_10	99502
gfmar_mar_15	99619
gfmar_mar_25	100097
gfmar_mar_50	131139
total_snps	131578

gm_qc <- drop_markers(gm, low_freq_bad$marker)
gm_qc <- drop_nullmarkers(gm_qc)
 
gm = gm_qc
gm

Object of class cross2 (crosstype "bc")

Total individuals              161
No. genotyped individuals      161
No. phenotyped individuals     161
No. with both geno & pheno     161

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                41911

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
3635 3508 2650 2558 2455 2639 2306 2094 2461 1729 2496 1833 2027 2127 1661 1323 
  17   18   19    X 
 801 1423 1279  906

markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/physical_map.csv")
mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
rownames(mapdf) <- mapdf$marker
mapdf <- mapdf[markers,]
names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
mapdf <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

Genome-wide scan

covars$rz.age <- as.numeric(covars$rz.age)
Xcovar <- get_x_covar(gm)
addcovar = model.matrix(~ICI.vs.EOI, data = covars)[,-1]
#addcovar.i = model.matrix(~ICI.vs.EOI, data = covars)[,-1]

K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

No additive covariates

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.124989	3.640271
0.05	3.116509	3.523335
0.1	3.105883	3.370417

#summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, gm$gmap, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i]," - ICI vs. EOI (no covariates)"))
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}


print("with normal kinship")

[1] “with normal kinship”

outk <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=kinship)

plot_lod(outk,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

out <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=K)

plot_lod(out,gm$gmap)

peaks<-find_peaks(out, gm$gmap, threshold=3.5, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	3	17.61	3.569852	5.292	35.168

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- as.character(peaks$chr[i])
  lod <- peaks$lod[i]
  pos <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$pos[i] & mapdf$chr == peaks$chr[i])]
  ci_lo <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_lo[i] & mapdf$chr == peaks$chr[i])]
  ci_hi <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_hi[i] & mapdf$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	3	36.554502	3.56985191434326	18.88115	79.931821

for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, covars[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  coeff <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], kinship=K[[chr]])
  blup <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], kinship=K[[chr]])

  #plot_coef(coeff, 
  #     gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1coeff])")
  #     )

  plot_coef(blup, 
       gm$gmap[chr], columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1blup])")
       )
  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"


  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  
}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	19.13140	19.16309	negative	MGI_C57BL6J_1921502	Armc1	NCBI_Gene:74252,ENSEMBL:ENSMUSG00000027599	MGI:1921502	protein coding gene	armadillo repeat containing 1
3	gene	19.14319	19.14390	negative	MGI_C57BL6J_5611207	Gm37979	ENSEMBL:ENSMUSG00000103135	MGI:5611207	unclassified gene	predicted gene, 37979
3	gene	19.18731	19.22082	positive	MGI_C57BL6J_1914722	Mtfr1	NCBI_Gene:67472,ENSEMBL:ENSMUSG00000027601	MGI:1914722	protein coding gene	mitochondrial fission regulator 1
3	gene	19.22311	19.31132	negative	MGI_C57BL6J_1202402	Pde7a	NCBI_Gene:18583,ENSEMBL:ENSMUSG00000069094	MGI:1202402	protein coding gene	phosphodiesterase 7A
3	gene	19.22311	19.22369	negative	MGI_C57BL6J_1921035	4930431H11Rik	NA	NA	unclassified gene	RIKEN cDNA 4930431H11 gene
3	gene	19.22778	19.24099	positive	MGI_C57BL6J_3801946	Gm16093	ENSEMBL:ENSMUSG00000087108	MGI:3801946	lncRNA gene	predicted gene 16093
3	gene	19.31166	19.31374	positive	MGI_C57BL6J_1920375	3110037C07Rik	NA	NA	unclassified gene	RIKEN cDNA 3110037C07 gene
3	gene	19.33077	19.33108	positive	MGI_C57BL6J_5452059	Gm22282	ENSEMBL:ENSMUSG00000089149	MGI:5452059	unclassified non-coding RNA gene	predicted gene, 22282
3	gene	19.37418	19.38763	positive	MGI_C57BL6J_5625073	Gm42188	NCBI_Gene:105247004	MGI:5625073	lncRNA gene	predicted gene, 42188
3	gene	19.50859	19.61086	positive	MGI_C57BL6J_1913576	Dnajc5b	NCBI_Gene:66326,ENSEMBL:ENSMUSG00000027606	MGI:1913576	protein coding gene	DnaJ heat shock protein family (Hsp40) member C5 beta
3	gene	19.56025	19.56042	positive	MGI_C57BL6J_5453107	Gm23330	ENSEMBL:ENSMUSG00000096211	MGI:5453107	snRNA gene	predicted gene, 23330
3	pseudogene	19.58479	19.58554	positive	MGI_C57BL6J_3646012	Gm6141	NCBI_Gene:620290,ENSEMBL:ENSMUSG00000084339	MGI:3646012	pseudogene	predicted pseudogene 6141
3	gene	19.61037	19.62948	negative	MGI_C57BL6J_1920674	1700064H15Rik	NCBI_Gene:102633032,ENSEMBL:ENSMUSG00000082766	MGI:1920674	protein coding gene	RIKEN cDNA 1700064H15 gene
3	gene	19.62796	19.62803	negative	MGI_C57BL6J_4413716	n-TRacg3	NCBI_Gene:102467637	MGI:4413716	tRNA gene	nuclear encoded tRNA arginine 3 (anticodon ACG)
3	gene	19.62835	19.62845	positive	MGI_C57BL6J_4414074	n-TYgta1	NCBI_Gene:102467442	MGI:4414074	tRNA gene	nuclear encoded tRNA tyrosine 1 (anticodon GTA)
3	gene	19.62878	19.62887	positive	MGI_C57BL6J_4414075	n-TYgta2	NCBI_Gene:102467395	MGI:4414075	tRNA gene	nuclear encoded tRNA tyrosine 2 (anticodon GTA)
3	gene	19.62899	19.62907	positive	MGI_C57BL6J_4413687	n-TAagc14	NCBI_Gene:102467233	MGI:4413687	tRNA gene	nuclear encoded tRNA alanine 14 (anticodon AGC)
3	gene	19.64434	19.69242	positive	MGI_C57BL6J_3036269	Trim55	NCBI_Gene:381485,ENSEMBL:ENSMUSG00000060913	MGI:3036269	protein coding gene	tripartite motif-containing 55
3	gene	19.68597	19.68657	positive	MGI_C57BL6J_3642300	BC002189	ENSEMBL:ENSMUSG00000104465	MGI:3642300	lncRNA gene	cDNA sequence BC002189
3	gene	19.69340	19.69540	negative	MGI_C57BL6J_88496	Crh	NCBI_Gene:12918,ENSEMBL:ENSMUSG00000049796	MGI:88496	protein coding gene	corticotropin releasing hormone
3	gene	19.69449	19.70735	positive	MGI_C57BL6J_5625074	Gm42189	NCBI_Gene:105247005	MGI:5625074	lncRNA gene	predicted gene, 42189
3	pseudogene	19.70825	19.70932	negative	MGI_C57BL6J_5011049	Gm18864	NCBI_Gene:100417853,ENSEMBL:ENSMUSG00000102261	MGI:5011049	pseudogene	predicted gene, 18864
3	pseudogene	19.76883	19.76933	positive	MGI_C57BL6J_3644940	Gm7442	NCBI_Gene:665002,ENSEMBL:ENSMUSG00000106182	MGI:3644940	pseudogene	predicted gene 7442
3	pseudogene	19.88087	19.88175	negative	MGI_C57BL6J_3780317	Gm2148	NCBI_Gene:102633274	MGI:3780317	pseudogene	predicted gene 2148
3	pseudogene	19.89487	19.90103	positive	MGI_C57BL6J_1918058	4632415L05Rik	NCBI_Gene:70808,ENSEMBL:ENSMUSG00000048106	MGI:1918058	pseudogene	RIKEN cDNA 4632415L05 gene
3	pseudogene	19.91380	19.91436	positive	MGI_C57BL6J_5610751	Gm37523	ENSEMBL:ENSMUSG00000103781	MGI:5610751	pseudogene	predicted gene, 37523
3	pseudogene	19.93424	19.93539	positive	MGI_C57BL6J_5009935	Gm17771	NCBI_Gene:100046095,ENSEMBL:ENSMUSG00000104031	MGI:5009935	pseudogene	predicted gene, 17771
3	gene	19.94515	19.95395	negative	MGI_C57BL6J_5625075	Gm42190	NCBI_Gene:105247006	MGI:5625075	lncRNA gene	predicted gene, 42190
3	gene	19.95698	20.00975	positive	MGI_C57BL6J_88476	Cp	NCBI_Gene:12870,ENSEMBL:ENSMUSG00000003617	MGI:88476	protein coding gene	ceruloplasmin
3	gene	19.99594	20.03538	negative	MGI_C57BL6J_2153839	Hps3	NCBI_Gene:12807,ENSEMBL:ENSMUSG00000027615	MGI:2153839	protein coding gene	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
3	gene	20.05657	20.05816	negative	MGI_C57BL6J_2445023	D830024F11Rik	NA	NA	unclassified gene	RIKEN cDNA D830024F11 gene
3	gene	20.05781	20.11849	positive	MGI_C57BL6J_1196437	Hltf	NCBI_Gene:20585,ENSEMBL:ENSMUSG00000002428	MGI:1196437	protein coding gene	helicase-like transcription factor
3	gene	20.12208	20.15532	negative	MGI_C57BL6J_1351614	Gyg	NCBI_Gene:27357,ENSEMBL:ENSMUSG00000019528	MGI:1351614	protein coding gene	glycogenin
3	gene	20.21562	20.24221	negative	MGI_C57BL6J_88479	Cpa3	NCBI_Gene:12873,ENSEMBL:ENSMUSG00000001865	MGI:88479	protein coding gene	carboxypeptidase A3, mast cell
3	gene	20.22229	20.22236	negative	MGI_C57BL6J_5531279	Mir7007	miRBase:MI0022856,NCBI_Gene:102465609,ENSEMBL:ENSMUSG00000099105	MGI:5531279	miRNA gene	microRNA 7007
3	gene	20.22229	20.22948	positive	MGI_C57BL6J_5590479	Gm31320	NCBI_Gene:102633510	MGI:5590479	lncRNA gene	predicted gene, 31320
3	pseudogene	20.22377	20.22469	negative	MGI_C57BL6J_3647720	Gm7428	NCBI_Gene:664965	MGI:3647720	pseudogene	predicted gene 7428
3	gene	20.24826	20.27573	negative	MGI_C57BL6J_1923953	Cpb1	NCBI_Gene:76703,ENSEMBL:ENSMUSG00000011463	MGI:1923953	protein coding gene	carboxypeptidase B1 (tissue)
3	gene	20.27671	20.28605	negative	MGI_C57BL6J_5826434	Gm46797	NCBI_Gene:108168859	MGI:5826434	lncRNA gene	predicted gene, 46797
3	gene	20.30841	20.30992	positive	MGI_C57BL6J_5663662	Gm43525	ENSEMBL:ENSMUSG00000105208	MGI:5663662	lncRNA gene	predicted gene 43525
3	gene	20.31447	20.36718	negative	MGI_C57BL6J_87965	Agtr1b	NCBI_Gene:11608,ENSEMBL:ENSMUSG00000054988	MGI:87965	protein coding gene	angiotensin II receptor, type 1b
3	pseudogene	20.39101	20.39198	negative	MGI_C57BL6J_5010611	Gm18426	NCBI_Gene:100417153,ENSEMBL:ENSMUSG00000103573	MGI:5010611	pseudogene	predicted gene, 18426
3	gene	20.40250	20.50621	negative	MGI_C57BL6J_5590625	Gm31466	NCBI_Gene:108168860,ENSEMBL:ENSMUSG00000102636	MGI:5590625	lncRNA gene	predicted gene, 31466
3	gene	20.40467	20.40491	positive	MGI_C57BL6J_5662731	Gm42594	ENSEMBL:ENSMUSG00000106442	MGI:5662731	unclassified gene	predicted gene 42594
3	pseudogene	20.78247	20.78407	negative	MGI_C57BL6J_5010676	Gm18491	NCBI_Gene:100417265,ENSEMBL:ENSMUSG00000103460	MGI:5010676	pseudogene	predicted gene, 18491
3	pseudogene	20.78794	20.78815	positive	MGI_C57BL6J_5611551	Gm38323	ENSEMBL:ENSMUSG00000102986	MGI:5611551	pseudogene	predicted gene, 38323
3	pseudogene	20.80448	20.80609	positive	MGI_C57BL6J_5010678	Gm18493	NCBI_Gene:100417268,ENSEMBL:ENSMUSG00000103533	MGI:5010678	pseudogene	predicted gene, 18493
3	gene	20.81639	20.82236	negative	MGI_C57BL6J_5590711	Gm31552	NCBI_Gene:102633820	MGI:5590711	lncRNA gene	predicted gene, 31552
3	gene	20.81962	20.82369	positive	MGI_C57BL6J_5610708	Gm37480	ENSEMBL:ENSMUSG00000102807	MGI:5610708	unclassified gene	predicted gene, 37480
3	pseudogene	21.04945	21.05053	positive	MGI_C57BL6J_3647006	Gm7488	NCBI_Gene:665094,ENSEMBL:ENSMUSG00000039617	MGI:3647006	pseudogene	predicted gene 7488
3	pseudogene	21.11358	21.11400	negative	MGI_C57BL6J_5663297	Gm43160	ENSEMBL:ENSMUSG00000106051	MGI:5663297	pseudogene	predicted gene 43160
3	gene	21.26837	21.26909	negative	MGI_C57BL6J_5579843	Gm29137	ENSEMBL:ENSMUSG00000101897	MGI:5579843	lncRNA gene	predicted gene 29137
3	gene	21.42179	21.48966	negative	MGI_C57BL6J_5590769	Gm31610	NCBI_Gene:102633894	MGI:5590769	lncRNA gene	predicted gene, 31610
3	pseudogene	21.60381	21.60551	positive	MGI_C57BL6J_5663812	Gm43675	ENSEMBL:ENSMUSG00000106085	MGI:5663812	pseudogene	predicted gene 43675
3	pseudogene	21.64839	21.64918	positive	MGI_C57BL6J_5010120	Gm17935	NCBI_Gene:100416137,ENSEMBL:ENSMUSG00000106460	MGI:5010120	pseudogene	predicted gene, 17935
3	gene	21.70282	21.71246	positive	MGI_C57BL6J_5590852	Gm31693	NCBI_Gene:102634003,ENSEMBL:ENSMUSG00000105440	MGI:5590852	lncRNA gene	predicted gene, 31693
3	gene	21.75353	21.80080	negative	MGI_C57BL6J_2442162	7530428D23Rik	NCBI_Gene:319506,ENSEMBL:ENSMUSG00000103441	MGI:2442162	lncRNA gene	RIKEN cDNA 7530428D23 gene
3	gene	21.86417	21.96435	negative	MGI_C57BL6J_5590972	Gm31813	NCBI_Gene:102634161	MGI:5590972	lncRNA gene	predicted gene, 31813
3	gene	21.99768	21.99847	negative	MGI_C57BL6J_5663811	Gm43674	ENSEMBL:ENSMUSG00000106321	MGI:5663811	lncRNA gene	predicted gene 43674
3	pseudogene	22.02120	22.02163	positive	MGI_C57BL6J_5663808	Gm43671	ENSEMBL:ENSMUSG00000106527	MGI:5663808	pseudogene	predicted gene 43671
3	gene	22.07441	22.07614	negative	MGI_C57BL6J_5663809	Gm43672	ENSEMBL:ENSMUSG00000106019	MGI:5663809	lncRNA gene	predicted gene 43672
3	gene	22.07441	22.07620	negative	MGI_C57BL6J_1914374	2810416G20Rik	NA	NA	protein coding gene	RIKEN cDNA 2810416G20 gene
3	gene	22.07659	22.21659	positive	MGI_C57BL6J_2441730	Tbl1xr1	NCBI_Gene:81004,ENSEMBL:ENSMUSG00000027630	MGI:2441730	protein coding gene	transducin (beta)-like 1X-linked receptor 1
3	pseudogene	22.08040	22.08125	negative	MGI_C57BL6J_3645251	Gm5842	NCBI_Gene:545506,ENSEMBL:ENSMUSG00000103293	MGI:3645251	pseudogene	predicted gene 5842
3	gene	22.25137	22.25166	positive	MGI_C57BL6J_105104	Rprl2	NCBI_Gene:19784,ENSEMBL:ENSMUSG00000087775	MGI:105104	RNase P RNA gene	ribonuclease P RNA-like 2
3	gene	22.28508	22.29783	negative	MGI_C57BL6J_5611552	Gm38324	ENSEMBL:ENSMUSG00000102987	MGI:5611552	lncRNA gene	predicted gene, 38324
3	pseudogene	22.34885	22.34961	negative	MGI_C57BL6J_5610864	Gm37636	NCBI_Gene:108168850,ENSEMBL:ENSMUSG00000102866	MGI:5610864	pseudogene	predicted gene, 37636
3	gene	22.40992	22.41005	negative	MGI_C57BL6J_5456131	Gm26354	ENSEMBL:ENSMUSG00000088846	MGI:5456131	snoRNA gene	predicted gene, 26354
3	pseudogene	22.52501	22.52624	positive	MGI_C57BL6J_3780056	Spin3-ps	NCBI_Gene:675593,ENSEMBL:ENSMUSG00000103801	MGI:3780056	pseudogene	spindlin family, member 3, pseudogene
3	gene	22.81221	22.81246	positive	MGI_C57BL6J_5611117	Gm37889	ENSEMBL:ENSMUSG00000102233	MGI:5611117	unclassified gene	predicted gene, 37889
3	pseudogene	23.07242	23.07492	positive	MGI_C57BL6J_5610211	Gm36983	ENSEMBL:ENSMUSG00000103275	MGI:5610211	pseudogene	predicted gene, 36983
3	gene	23.08598	23.08895	positive	MGI_C57BL6J_5610249	Gm37021	ENSEMBL:ENSMUSG00000103607	MGI:5610249	lncRNA gene	predicted gene, 37021
3	pseudogene	23.37494	23.37532	negative	MGI_C57BL6J_5610720	Gm37492	ENSEMBL:ENSMUSG00000102214	MGI:5610720	pseudogene	predicted gene, 37492
3	gene	23.46105	23.52140	positive	MGI_C57BL6J_1924114	4930412E21Rik	NCBI_Gene:100039548,ENSEMBL:ENSMUSG00000102203	MGI:1924114	lncRNA gene	RIKEN cDNA 4930412E21 gene
3	gene	23.79810	25.14426	negative	MGI_C57BL6J_2685867	Naaladl2	NCBI_Gene:635702,ENSEMBL:ENSMUSG00000102758	MGI:2685867	protein coding gene	N-acetylated alpha-linked acidic dipeptidase-like 2
3	pseudogene	23.93096	23.93200	positive	MGI_C57BL6J_5011009	Gm18824	NCBI_Gene:100417784	MGI:5011009	pseudogene	predicted gene, 18824
3	gene	23.94002	23.94593	positive	MGI_C57BL6J_5625076	Gm42191	NCBI_Gene:105247007	MGI:5625076	lncRNA gene	predicted gene, 42191
3	gene	24.16303	24.16311	negative	MGI_C57BL6J_4413931	n-TLcag1	NCBI_Gene:102467553	MGI:4413931	tRNA gene	nuclear encoded tRNA leucine 1 (anticodon CAG)
3	pseudogene	24.33304	24.33355	positive	MGI_C57BL6J_3645137	Gm7536	NCBI_Gene:665189,ENSEMBL:ENSMUSG00000057036	MGI:3645137	pseudogene	predicted gene 7536
3	gene	24.48671	24.48749	positive	MGI_C57BL6J_1920306	2900080J11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900080J11 gene
3	gene	24.56207	24.56218	positive	MGI_C57BL6J_5454481	Gm24704	ENSEMBL:ENSMUSG00000070227	MGI:5454481	snRNA gene	predicted gene, 24704
3	gene	24.71872	24.71898	positive	MGI_C57BL6J_5453839	Gm24062	ENSEMBL:ENSMUSG00000088115	MGI:5453839	unclassified non-coding RNA gene	predicted gene, 24062
3	pseudogene	25.00742	25.00771	negative	MGI_C57BL6J_5662911	Gm42774	ENSEMBL:ENSMUSG00000105009	MGI:5662911	pseudogene	predicted gene 42774
3	gene	25.14407	25.14426	positive	MGI_C57BL6J_5610364	Gm37136	ENSEMBL:ENSMUSG00000102876	MGI:5610364	unclassified gene	predicted gene, 37136
3	pseudogene	25.18480	25.18498	negative	MGI_C57BL6J_5611230	Gm38002	ENSEMBL:ENSMUSG00000102855	MGI:5611230	pseudogene	predicted gene, 38002
3	pseudogene	25.21076	25.21273	negative	MGI_C57BL6J_3704211	Gm10259	NCBI_Gene:100039592,ENSEMBL:ENSMUSG00000069083	MGI:3704211	pseudogene	predicted pseudogene 10259
3	gene	25.42621	26.33286	negative	MGI_C57BL6J_2179435	Nlgn1	NCBI_Gene:192167,ENSEMBL:ENSMUSG00000063887	MGI:2179435	protein coding gene	neuroligin 1
3	gene	25.54602	25.54615	positive	MGI_C57BL6J_5454027	Gm24250	ENSEMBL:ENSMUSG00000087945	MGI:5454027	rRNA gene	predicted gene, 24250
3	gene	25.64956	25.65077	negative	MGI_C57BL6J_1920377	3110039C02Rik	NA	NA	unclassified gene	RIKEN cDNA 3110039C02 gene
3	gene	25.69519	25.70030	negative	MGI_C57BL6J_5610801	Gm37573	ENSEMBL:ENSMUSG00000102397	MGI:5610801	lncRNA gene	predicted gene, 37573
3	pseudogene	25.73123	25.73261	positive	MGI_C57BL6J_3647151	Gm6197	NCBI_Gene:621017,ENSEMBL:ENSMUSG00000104295	MGI:3647151	pseudogene	predicted gene 6197
3	gene	25.86566	25.86752	negative	MGI_C57BL6J_2443798	A830010M09Rik	NA	NA	unclassified gene	RIKEN cDNA A830010M09 gene
3	gene	26.33115	26.33688	positive	MGI_C57BL6J_3698881	A830092H15Rik	NCBI_Gene:100379095,ENSEMBL:ENSMUSG00000074664	MGI:3698881	lncRNA gene	RIKEN cDNA A830092H15 gene
3	pseudogene	26.38044	26.38256	positive	MGI_C57BL6J_3648363	Gm4855	NCBI_Gene:229152,ENSEMBL:ENSMUSG00000102274	MGI:3648363	pseudogene	predicted gene 4855
3	gene	26.62618	26.62631	negative	MGI_C57BL6J_5455550	Gm25773	ENSEMBL:ENSMUSG00000080368	MGI:5455550	miRNA gene	predicted gene, 25773
3	gene	26.63762	26.98321	positive	MGI_C57BL6J_1918112	Spata16	NCBI_Gene:70862,ENSEMBL:ENSMUSG00000039335	MGI:1918112	protein coding gene	spermatogenesis associated 16
3	gene	26.85020	26.87914	negative	MGI_C57BL6J_5591617	Gm32458	NCBI_Gene:102635017	MGI:5591617	lncRNA gene	predicted gene, 32458
3	pseudogene	27.01276	27.01287	positive	MGI_C57BL6J_5610887	Gm37659	ENSEMBL:ENSMUSG00000103712	MGI:5610887	pseudogene	predicted gene, 37659
3	gene	27.02642	27.02655	negative	MGI_C57BL6J_5690856	Gm44464	ENSEMBL:ENSMUSG00000105670	MGI:5690856	miRNA gene	predicted gene, 44464
3	pseudogene	27.04674	27.04798	negative	MGI_C57BL6J_3645515	Gm7558	NCBI_Gene:665258,ENSEMBL:ENSMUSG00000102908	MGI:3645515	pseudogene	predicted gene 7558
3	gene	27.09722	27.15391	negative	MGI_C57BL6J_95281	Ect2	NCBI_Gene:13605,ENSEMBL:ENSMUSG00000027699	MGI:95281	protein coding gene	ect2 oncogene
3	gene	27.10898	27.10909	positive	MGI_C57BL6J_5454929	Gm25152	ENSEMBL:ENSMUSG00000087742	MGI:5454929	snoRNA gene	predicted gene, 25152
3	gene	27.15403	27.15702	positive	MGI_C57BL6J_1923907	1700125G22Rik	NCBI_Gene:76657,ENSEMBL:ENSMUSG00000097584	MGI:1923907	lncRNA gene	RIKEN cDNA 1700125G22 gene
3	gene	27.18296	27.28461	positive	MGI_C57BL6J_2443191	Nceh1	NCBI_Gene:320024,ENSEMBL:ENSMUSG00000027698	MGI:2443191	protein coding gene	neutral cholesterol ester hydrolase 1
3	gene	27.26033	27.28446	positive	MGI_C57BL6J_5625077	Gm42192	NCBI_Gene:105247008	MGI:5625077	lncRNA gene	predicted gene, 42192
3	pseudogene	27.27806	27.27845	positive	MGI_C57BL6J_5610419	Gm37191	ENSEMBL:ENSMUSG00000102186	MGI:5610419	pseudogene	predicted gene, 37191
3	pseudogene	27.30841	27.30867	negative	MGI_C57BL6J_5663482	Gm43345	ENSEMBL:ENSMUSG00000105806	MGI:5663482	pseudogene	predicted gene 43345
3	gene	27.31703	27.34243	positive	MGI_C57BL6J_107414	Tnfsf10	NCBI_Gene:22035,ENSEMBL:ENSMUSG00000039304	MGI:107414	protein coding gene	tumor necrosis factor (ligand) superfamily, member 10
3	gene	27.37131	27.37923	positive	MGI_C57BL6J_2441906	Ghsr	NCBI_Gene:208188,ENSEMBL:ENSMUSG00000051136	MGI:2441906	protein coding gene	growth hormone secretagogue receptor
3	gene	27.41511	27.41615	negative	MGI_C57BL6J_1924904	C430049A07Rik	NA	NA	unclassified gene	RIKEN cDNA C430049A07 gene
3	gene	27.41616	27.71311	negative	MGI_C57BL6J_1919257	Fndc3b	NCBI_Gene:72007,ENSEMBL:ENSMUSG00000039286	MGI:1919257	protein coding gene	fibronectin type III domain containing 3B
3	gene	27.44166	27.44411	positive	MGI_C57BL6J_5625078	Gm42193	NCBI_Gene:105247009	MGI:5625078	lncRNA gene	predicted gene, 42193
3	gene	27.48228	27.48424	positive	MGI_C57BL6J_5591897	Gm32738	NCBI_Gene:102635381	MGI:5591897	lncRNA gene	predicted gene, 32738
3	gene	27.54664	27.54787	positive	MGI_C57BL6J_5663481	Gm43344	ENSEMBL:ENSMUSG00000106625	MGI:5663481	unclassified gene	predicted gene 43344
3	gene	27.58490	27.58499	negative	MGI_C57BL6J_4834306	Mir3092	miRBase:MI0014085,NCBI_Gene:100526525,ENSEMBL:ENSMUSG00000092695	MGI:4834306	miRNA gene	microRNA 3092
3	gene	27.77786	27.84092	positive	MGI_C57BL6J_5625079	Gm42194	NCBI_Gene:105247010	MGI:5625079	lncRNA gene	predicted gene, 42194
3	gene	27.79788	27.81538	negative	MGI_C57BL6J_5591954	Gm32795	NCBI_Gene:102635463	MGI:5591954	lncRNA gene	predicted gene, 32795
3	gene	27.86606	27.89639	negative	MGI_C57BL6J_2685410	Tmem212	NCBI_Gene:208613,ENSEMBL:ENSMUSG00000043164	MGI:2685410	protein coding gene	transmembrane protein 212
3	gene	27.86811	27.86827	positive	MGI_C57BL6J_5455817	Gm26040	ENSEMBL:ENSMUSG00000088772	MGI:5455817	snoRNA gene	predicted gene, 26040
3	gene	27.89680	27.90023	negative	MGI_C57BL6J_5625080	Gm42195	NCBI_Gene:105247011	MGI:5625080	lncRNA gene	predicted gene, 42195
3	gene	27.93841	28.13336	positive	MGI_C57BL6J_109585	Pld1	NCBI_Gene:18805,ENSEMBL:ENSMUSG00000027695	MGI:109585	protein coding gene	phospholipase D1
3	gene	28.17651	28.21221	positive	MGI_C57BL6J_5625081	Gm42196	NCBI_Gene:105247012,ENSEMBL:ENSMUSG00000109716	MGI:5625081	lncRNA gene	predicted gene, 42196
3	pseudogene	28.24552	28.24577	positive	MGI_C57BL6J_5610326	Gm37098	ENSEMBL:ENSMUSG00000103729	MGI:5610326	pseudogene	predicted gene, 37098
3	gene	28.26321	28.67586	positive	MGI_C57BL6J_1916264	Tnik	NCBI_Gene:665113,ENSEMBL:ENSMUSG00000027692	MGI:1916264	protein coding gene	TRAF2 and NCK interacting kinase
3	gene	28.26928	28.26983	positive	MGI_C57BL6J_2139599	AA589472	NA	NA	unclassified gene	expressed sequence AA589472
3	gene	28.32436	28.32609	positive	MGI_C57BL6J_5610765	Gm37537	ENSEMBL:ENSMUSG00000103420	MGI:5610765	unclassified gene	predicted gene, 37537
3	gene	28.41994	28.42002	positive	MGI_C57BL6J_4950412	Mir466q	miRBase:MI0018032,NCBI_Gene:100628591,ENSEMBL:ENSMUSG00000092990	MGI:4950412	miRNA gene	microRNA 466q
3	gene	28.69790	28.73136	positive	MGI_C57BL6J_1095438	Slc2a2	NCBI_Gene:20526,ENSEMBL:ENSMUSG00000027690	MGI:1095438	protein coding gene	solute carrier family 2 (facilitated glucose transporter), member 2
3	gene	28.70267	28.78111	negative	MGI_C57BL6J_1920861	1700112D23Rik	NCBI_Gene:73611,ENSEMBL:ENSMUSG00000091329	MGI:1920861	lncRNA gene	RIKEN cDNA 1700112D23 gene
3	pseudogene	28.76353	28.76539	negative	MGI_C57BL6J_3648080	Gm6505	NCBI_Gene:624446,ENSEMBL:ENSMUSG00000070522	MGI:3648080	pseudogene	predicted pseudogene 6505
3	gene	28.78127	28.79885	positive	MGI_C57BL6J_1933735	Eif5a2	NCBI_Gene:208691,ENSEMBL:ENSMUSG00000050192	MGI:1933735	protein coding gene	eukaryotic translation initiation factor 5A2
3	gene	28.79064	28.80542	negative	MGI_C57BL6J_5592109	Gm32950	NCBI_Gene:102635671,ENSEMBL:ENSMUSG00000103827	MGI:5592109	lncRNA gene	predicted gene, 32950
3	gene	28.80544	28.80742	positive	MGI_C57BL6J_1915278	Rpl22l1	NCBI_Gene:68028,ENSEMBL:ENSMUSG00000039221	MGI:1915278	protein coding gene	ribosomal protein L22 like 1
3	gene	28.80720	28.81618	negative	MGI_C57BL6J_5592210	Gm33051	NCBI_Gene:102635804,ENSEMBL:ENSMUSG00000104444	MGI:5592210	lncRNA gene	predicted gene, 33051
3	gene	28.85203	28.85426	negative	MGI_C57BL6J_5611095	Gm37867	ENSEMBL:ENSMUSG00000104275	MGI:5611095	lncRNA gene	predicted gene, 37867
3	gene	28.87981	28.88346	positive	MGI_C57BL6J_5611152	Gm37924	ENSEMBL:ENSMUSG00000102482	MGI:5611152	unclassified gene	predicted gene, 37924
3	gene	28.88346	28.89728	negative	MGI_C57BL6J_5592261	Gm33102	NCBI_Gene:102635876	MGI:5592261	lncRNA gene	predicted gene, 33102
3	gene	28.89262	28.92672	positive	MGI_C57BL6J_2686373	Gm1527	NCBI_Gene:385263,ENSEMBL:ENSMUSG00000074655	MGI:2686373	protein coding gene	predicted gene 1527
3	gene	29.04377	29.04555	negative	MGI_C57BL6J_5592313	Gm33154	NCBI_Gene:102635945	MGI:5592313	lncRNA gene	predicted gene, 33154
3	gene	29.08072	29.69121	positive	MGI_C57BL6J_1922990	Egfem1	NCBI_Gene:75740,ENSEMBL:ENSMUSG00000063600	MGI:1922990	protein coding gene	EGF-like and EMI domain containing 1
3	gene	29.17484	29.17693	positive	MGI_C57BL6J_5611257	Gm38029	ENSEMBL:ENSMUSG00000103992	MGI:5611257	unclassified gene	predicted gene, 38029
3	gene	29.20934	29.21198	positive	MGI_C57BL6J_2442122	D230021J17Rik	NA	NA	unclassified gene	RIKEN cDNA D230021J17 gene
3	gene	29.21989	29.22125	positive	MGI_C57BL6J_5611193	Gm37965	ENSEMBL:ENSMUSG00000102579	MGI:5611193	unclassified gene	predicted gene, 37965
3	gene	29.26628	29.26684	negative	MGI_C57BL6J_2139582	AA516838	NA	NA	unclassified gene	expressed sequence AA516838
3	gene	29.41682	29.41692	positive	MGI_C57BL6J_3691605	Mir551b	miRBase:MI0004131,NCBI_Gene:791072,ENSEMBL:ENSMUSG00000076120	MGI:3691605	miRNA gene	microRNA 551b
3	gene	29.63674	29.63685	positive	MGI_C57BL6J_5531333	Mir21b	miRBase:MI0021906,NCBI_Gene:102466637,ENSEMBL:ENSMUSG00000098315	MGI:5531333	miRNA gene	microRNA 21b
3	gene	29.66251	29.69656	negative	MGI_C57BL6J_5625082	Gm42197	NCBI_Gene:105247013	MGI:5625082	lncRNA gene	predicted gene, 42197
3	gene	29.76404	29.89323	negative	MGI_C57BL6J_5592365	Gm33206	NCBI_Gene:102636014,ENSEMBL:ENSMUSG00000102574	MGI:5592365	lncRNA gene	predicted gene, 33206
3	pseudogene	29.77128	29.77142	positive	MGI_C57BL6J_5610785	Gm37557	ENSEMBL:ENSMUSG00000103095	MGI:5610785	pseudogene	predicted gene, 37557
3	gene	29.89101	29.92419	positive	MGI_C57BL6J_5564803	Mannr	NCBI_Gene:102636083,ENSEMBL:ENSMUSG00000102590	MGI:5564803	lncRNA gene	Mecom adjacent non-protein coding RNA
3	pseudogene	29.92654	29.92697	positive	MGI_C57BL6J_5610509	Gm37281	ENSEMBL:ENSMUSG00000102884	MGI:5610509	pseudogene	predicted gene, 37281
3	gene	29.95130	30.54801	negative	MGI_C57BL6J_95457	Mecom	NCBI_Gene:14013,ENSEMBL:ENSMUSG00000027684	MGI:95457	protein coding gene	MDS1 and EVI1 complex locus
3	gene	30.01238	30.05481	positive	MGI_C57BL6J_4439646	Mecomos	ENSEMBL:ENSMUSG00000085702	MGI:4439646	antisense lncRNA gene	MDS1 and EVI1 complex locus, opposite strand
3	gene	30.16025	30.16189	negative	MGI_C57BL6J_5611294	Gm38066	ENSEMBL:ENSMUSG00000104486	MGI:5611294	unclassified gene	predicted gene, 38066
3	gene	30.22557	30.22769	negative	MGI_C57BL6J_5611425	Gm38197	ENSEMBL:ENSMUSG00000102460	MGI:5611425	unclassified gene	predicted gene, 38197
3	gene	30.26684	30.28019	negative	MGI_C57BL6J_3648282	Gm10258	NCBI_Gene:545510,ENSEMBL:ENSMUSG00000069074	MGI:3648282	unclassified non-coding RNA gene	predicted gene 10258
3	gene	30.27232	30.27438	negative	MGI_C57BL6J_5611590	Gm38362	ENSEMBL:ENSMUSG00000103870	MGI:5611590	unclassified gene	predicted gene, 38362
3	gene	30.34998	30.35132	negative	MGI_C57BL6J_1924752	9530010C24Rik	NA	NA	unclassified gene	RIKEN cDNA 9530010C24 gene
3	gene	30.48843	30.48929	positive	MGI_C57BL6J_5610252	Gm37024	ENSEMBL:ENSMUSG00000104079	MGI:5610252	unclassified gene	predicted gene, 37024
3	gene	30.50172	30.50381	negative	MGI_C57BL6J_5610880	Gm37652	ENSEMBL:ENSMUSG00000103738	MGI:5610880	unclassified gene	predicted gene, 37652
3	gene	30.55270	30.56424	negative	MGI_C57BL6J_5611486	Gm38258	ENSEMBL:ENSMUSG00000102256	MGI:5611486	lncRNA gene	predicted gene, 38258
3	pseudogene	30.56166	30.56213	negative	MGI_C57BL6J_5611381	Gm38153	ENSEMBL:ENSMUSG00000104243	MGI:5611381	pseudogene	predicted gene, 38153
3	gene	30.59484	30.59576	negative	MGI_C57BL6J_1920499	1600017P15Rik	ENSEMBL:ENSMUSG00000102505,ENSEMBL:ENSMUSG00000065361	MGI:1920499	unclassified gene	RIKEN cDNA 1600017P15 gene
3	gene	30.59707	30.59994	negative	MGI_C57BL6J_1923902	Actrt3	NCBI_Gene:76652,ENSEMBL:ENSMUSG00000037737	MGI:1923902	protein coding gene	actin related protein T3
3	gene	30.60127	30.60134	positive	MGI_C57BL6J_4414091	n-TVaac8	NCBI_Gene:102467402	MGI:4414091	tRNA gene	nuclear encoded tRNA valine 8 (anticodon AAC)
3	gene	30.60206	30.61987	positive	MGI_C57BL6J_1931415	Mynn	NCBI_Gene:80732,ENSEMBL:ENSMUSG00000037730	MGI:1931415	protein coding gene	myoneurin
3	gene	30.62427	30.64787	negative	MGI_C57BL6J_1919077	Lrrc34	NCBI_Gene:71827,ENSEMBL:ENSMUSG00000027702	MGI:1919077	protein coding gene	leucine rich repeat containing 34
3	gene	30.64451	30.67243	positive	MGI_C57BL6J_1915557	Lrriq4	NCBI_Gene:68307,ENSEMBL:ENSMUSG00000027703	MGI:1915557	protein coding gene	leucine-rich repeats and IQ motif containing 4
3	gene	30.67855	30.69984	negative	MGI_C57BL6J_2443864	Lrrc31	NCBI_Gene:320352,ENSEMBL:ENSMUSG00000074653	MGI:2443864	protein coding gene	leucine rich repeat containing 31
3	gene	30.68594	30.69301	positive	MGI_C57BL6J_3705271	Gm15462	NCBI_Gene:108168861,ENSEMBL:ENSMUSG00000086189	MGI:3705271	lncRNA gene	predicted gene 15462
3	gene	30.74629	30.76717	positive	MGI_C57BL6J_1923203	Samd7	NCBI_Gene:75953,ENSEMBL:ENSMUSG00000051860	MGI:1923203	protein coding gene	sterile alpha motif domain containing 7
3	gene	30.75231	30.75665	negative	MGI_C57BL6J_5592749	Gm33590	NCBI_Gene:102636556	MGI:5592749	lncRNA gene	predicted gene, 33590
3	gene	30.79257	30.79356	negative	MGI_C57BL6J_1918530	4933429H19Rik	ENSEMBL:ENSMUSG00000097786	MGI:1918530	lncRNA gene	RIKEN cDNA 4933429H19 gene
3	gene	30.79276	30.82126	positive	MGI_C57BL6J_1916526	Sec62	NCBI_Gene:69276,ENSEMBL:ENSMUSG00000027706	MGI:1916526	protein coding gene	SEC62 homolog (S. cerevisiae)
3	pseudogene	30.82857	30.82883	negative	MGI_C57BL6J_5611308	Gm38080	ENSEMBL:ENSMUSG00000104361	MGI:5611308	pseudogene	predicted gene, 38080
3	gene	30.84154	30.85199	negative	MGI_C57BL6J_5625083	Gm42198	NCBI_Gene:105247015	MGI:5625083	lncRNA gene	predicted gene, 42198
3	gene	30.85248	30.85586	negative	MGI_C57BL6J_5625084	Gm42199	NCBI_Gene:105247016	MGI:5625084	lncRNA gene	predicted gene, 42199
3	gene	30.85587	30.89719	positive	MGI_C57BL6J_1919112	Gpr160	NCBI_Gene:71862,ENSEMBL:ENSMUSG00000037661	MGI:1919112	protein coding gene	G protein-coupled receptor 160
3	gene	30.89929	30.96948	negative	MGI_C57BL6J_2181434	Phc3	NCBI_Gene:241915,ENSEMBL:ENSMUSG00000037652	MGI:2181434	protein coding gene	polyhomeotic 3
3	gene	30.95733	30.95764	negative	MGI_C57BL6J_1924590	9530022L04Rik	ENSEMBL:ENSMUSG00000102369	MGI:1924590	unclassified gene	RIKEN cDNA 9530022L04 gene
3	pseudogene	30.97291	30.97511	positive	MGI_C57BL6J_3781157	Gm2979	NCBI_Gene:100040809,ENSEMBL:ENSMUSG00000102741	MGI:3781157	pseudogene	predicted gene 2979
3	gene	30.99574	31.05296	positive	MGI_C57BL6J_99260	Prkci	NCBI_Gene:18759,ENSEMBL:ENSMUSG00000037643	MGI:99260	protein coding gene	protein kinase C, iota
3	gene	31.03897	31.03903	positive	MGI_C57BL6J_5531134	Mir7008	miRBase:MI0022857,NCBI_Gene:102465610,ENSEMBL:ENSMUSG00000098890	MGI:5531134	miRNA gene	microRNA 7008
3	gene	31.06130	31.06669	positive	MGI_C57BL6J_5592800	Gm33641	NCBI_Gene:102636630	MGI:5592800	lncRNA gene	predicted gene, 33641
3	gene	31.06243	31.07994	negative	MGI_C57BL6J_5592853	Gm33694	NCBI_Gene:102636694	MGI:5592853	lncRNA gene	predicted gene, 33694
3	gene	31.09480	31.12292	positive	MGI_C57BL6J_106203	Skil	NCBI_Gene:20482,ENSEMBL:ENSMUSG00000027660	MGI:106203	protein coding gene	SKI-like
3	gene	31.14992	31.16433	positive	MGI_C57BL6J_106925	Cldn11	NCBI_Gene:18417,ENSEMBL:ENSMUSG00000037625	MGI:106925	protein coding gene	claudin 11
3	gene	31.20285	31.31057	negative	MGI_C57BL6J_3040688	Slc7a14	NCBI_Gene:241919,ENSEMBL:ENSMUSG00000069072	MGI:3040688	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
3	gene	31.23262	31.23736	positive	MGI_C57BL6J_5592993	Gm33834	NCBI_Gene:102636884	MGI:5592993	lncRNA gene	predicted gene, 33834
3	gene	31.24614	31.31690	positive	MGI_C57BL6J_3782942	Gm15496	NCBI_Gene:102636803,ENSEMBL:ENSMUSG00000085953	MGI:3782942	lncRNA gene	predicted gene 15496
3	gene	31.34101	31.34528	positive	MGI_C57BL6J_5611253	Gm38025	ENSEMBL:ENSMUSG00000103998	MGI:5611253	lncRNA gene	predicted gene, 38025
3	pseudogene	31.64480	31.69058	negative	MGI_C57BL6J_3779607	Gm6558	NCBI_Gene:625125,ENSEMBL:ENSMUSG00000103499	MGI:3779607	pseudogene	predicted gene 6558
3	gene	31.68642	31.69214	positive	MGI_C57BL6J_5593045	Gm33886	NCBI_Gene:102636961	MGI:5593045	lncRNA gene	predicted gene, 33886
3	gene	31.89883	31.90212	negative	MGI_C57BL6J_5593190	Gm34031	NCBI_Gene:102637147	MGI:5593190	lncRNA gene	predicted gene, 34031
3	gene	31.90213	32.20018	positive	MGI_C57BL6J_1919663	Kcnmb2	NCBI_Gene:72413,ENSEMBL:ENSMUSG00000037610	MGI:1919663	protein coding gene	potassium large conductance calcium-activated channel, subfamily M, beta member 2
3	gene	31.95476	31.95780	positive	MGI_C57BL6J_5611062	Gm37834	ENSEMBL:ENSMUSG00000103539	MGI:5611062	unclassified gene	predicted gene, 37834
3	gene	32.23753	32.32631	negative	MGI_C57BL6J_5625086	Gm42201	NCBI_Gene:105247019	MGI:5625086	lncRNA gene	predicted gene, 42201
3	pseudogene	32.26033	32.26111	positive	MGI_C57BL6J_5610998	Gm37770	NCBI_Gene:108168862,ENSEMBL:ENSMUSG00000103643	MGI:5610998	pseudogene	predicted gene, 37770
3	gene	32.33479	32.36601	negative	MGI_C57BL6J_1195270	Zmat3	NCBI_Gene:22401,ENSEMBL:ENSMUSG00000027663	MGI:1195270	protein coding gene	zinc finger matrin type 3
3	gene	32.36549	32.36744	positive	MGI_C57BL6J_1914826	4930429B21Rik	NCBI_Gene:67576	MGI:1914826	lncRNA gene	RIKEN cDNA 4930429B21 gene
3	gene	32.37158	32.37299	negative	MGI_C57BL6J_5610218	Gm36990	ENSEMBL:ENSMUSG00000102825	MGI:5610218	unclassified gene	predicted gene, 36990
3	gene	32.37898	32.38470	negative	MGI_C57BL6J_5625087	Gm42202	NCBI_Gene:105247020	MGI:5625087	lncRNA gene	predicted gene, 42202
3	gene	32.39707	32.46849	positive	MGI_C57BL6J_1206581	Pik3ca	NCBI_Gene:18706,ENSEMBL:ENSMUSG00000027665	MGI:1206581	protein coding gene	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
3	gene	32.45459	32.45576	positive	MGI_C57BL6J_5610351	Gm37123	ENSEMBL:ENSMUSG00000103039	MGI:5610351	unclassified gene	predicted gene, 37123
3	gene	32.46778	32.50290	negative	MGI_C57BL6J_3612244	Kcnmb3	NCBI_Gene:100502876,ENSEMBL:ENSMUSG00000091091	MGI:3612244	protein coding gene	potassium large conductance calcium-activated channel, subfamily M, beta member 3
3	gene	32.51026	32.52083	positive	MGI_C57BL6J_1915028	Zfp639	NCBI_Gene:67778,ENSEMBL:ENSMUSG00000027667	MGI:1915028	protein coding gene	zinc finger protein 639
3	gene	32.51180	32.51234	negative	MGI_C57BL6J_5610820	Gm37592	ENSEMBL:ENSMUSG00000104231	MGI:5610820	lncRNA gene	predicted gene, 37592
3	gene	32.52946	32.57924	positive	MGI_C57BL6J_1914664	Mfn1	NCBI_Gene:67414,ENSEMBL:ENSMUSG00000027668	MGI:1914664	protein coding gene	mitofusin 1
3	gene	32.58033	32.61659	negative	MGI_C57BL6J_104581	Gnb4	NCBI_Gene:14696,ENSEMBL:ENSMUSG00000027669	MGI:104581	protein coding gene	guanine nucleotide binding protein (G protein), beta 4
3	gene	32.61086	32.61351	positive	MGI_C57BL6J_5610868	Gm37640	ENSEMBL:ENSMUSG00000102862	MGI:5610868	lncRNA gene	predicted gene, 37640
3	gene	32.70630	32.72697	positive	MGI_C57BL6J_1861453	Actl6a	NCBI_Gene:56456,ENSEMBL:ENSMUSG00000027671	MGI:1861453	protein coding gene	actin-like 6A
3	gene	32.72178	32.72209	negative	MGI_C57BL6J_5610581	Gm37353	ENSEMBL:ENSMUSG00000103590	MGI:5610581	unclassified gene	predicted gene, 37353
3	gene	32.72540	32.73761	negative	MGI_C57BL6J_1921850	Mrpl47	NCBI_Gene:74600,ENSEMBL:ENSMUSG00000037531	MGI:1921850	protein coding gene	mitochondrial ribosomal protein L47
3	gene	32.73610	32.73761	negative	MGI_C57BL6J_3704212	Gm9859	NA	NA	unclassified gene	predicted gene 9859
3	gene	32.73699	32.75157	positive	MGI_C57BL6J_1913296	Ndufb5	NCBI_Gene:66046,ENSEMBL:ENSMUSG00000027673	MGI:1913296	protein coding gene	NADH:ubiquinone oxidoreductase subunit B5
3	gene	32.81702	32.93807	positive	MGI_C57BL6J_1919857	Usp13	NCBI_Gene:72607,ENSEMBL:ENSMUSG00000056900	MGI:1919857	protein coding gene	ubiquitin specific peptidase 13 (isopeptidase T-3)
3	pseudogene	32.88001	32.88061	negative	MGI_C57BL6J_3783022	Gm15574	ENSEMBL:ENSMUSG00000081883	MGI:3783022	pseudogene	predicted gene 15574
3	gene	32.93931	32.98330	positive	MGI_C57BL6J_5610687	Gm37459	ENSEMBL:ENSMUSG00000104283	MGI:5610687	lncRNA gene	predicted gene, 37459
3	gene	32.94793	33.14327	negative	MGI_C57BL6J_1916672	Pex5l	NCBI_Gene:58869,ENSEMBL:ENSMUSG00000027674	MGI:1916672	protein coding gene	peroxisomal biogenesis factor 5-like
3	gene	33.01196	33.01211	positive	MGI_C57BL6J_5452991	Gm23214	ENSEMBL:ENSMUSG00000084665	MGI:5452991	snRNA gene	predicted gene, 23214
3	gene	33.02478	33.08861	positive	MGI_C57BL6J_1921124	4930419G24Rik	NCBI_Gene:73874,ENSEMBL:ENSMUSG00000087625	MGI:1921124	lncRNA gene	RIKEN cDNA 4930419G24 gene
3	gene	33.03423	33.03705	negative	MGI_C57BL6J_5610671	Gm37443	ENSEMBL:ENSMUSG00000102581	MGI:5610671	unclassified gene	predicted gene, 37443
3	gene	33.07392	33.07636	negative	MGI_C57BL6J_5011630	Gm19445	ENSEMBL:ENSMUSG00000102498	MGI:5011630	unclassified gene	predicted gene, 19445
3	pseudogene	33.19080	33.19104	positive	MGI_C57BL6J_5610356	Gm37128	ENSEMBL:ENSMUSG00000103896	MGI:5610356	pseudogene	predicted gene, 37128
3	gene	33.26072	33.26082	negative	MGI_C57BL6J_5531356	Gm27974	ENSEMBL:ENSMUSG00000098622	MGI:5531356	miRNA gene	predicted gene, 27974
3	gene	33.28312	33.28565	positive	MGI_C57BL6J_5610259	Gm37031	ENSEMBL:ENSMUSG00000104384	MGI:5610259	unclassified gene	predicted gene, 37031
3	gene	33.39306	33.39320	negative	MGI_C57BL6J_5454557	Gm24780	ENSEMBL:ENSMUSG00000088260	MGI:5454557	snoRNA gene	predicted gene, 24780
3	gene	33.39338	33.39485	negative	MGI_C57BL6J_5610626	Gm37398	ENSEMBL:ENSMUSG00000104203	MGI:5610626	unclassified gene	predicted gene, 37398
3	gene	33.54027	33.54342	positive	MGI_C57BL6J_5593364	Gm34205	NCBI_Gene:102637377	MGI:5593364	lncRNA gene	predicted gene, 34205
3	pseudogene	33.62159	33.62245	positive	MGI_C57BL6J_3649050	Gm5845	NCBI_Gene:545512,ENSEMBL:ENSMUSG00000103423	MGI:3649050	pseudogene	predicted gene 5845
3	pseudogene	33.68451	33.68487	negative	MGI_C57BL6J_5662831	Gm42694	ENSEMBL:ENSMUSG00000104954	MGI:5662831	pseudogene	predicted gene 42694
3	gene	33.68696	33.69200	negative	MGI_C57BL6J_5625088	Gm42203	NCBI_Gene:105247021	MGI:5625088	lncRNA gene	predicted gene, 42203
3	gene	33.70336	33.75962	negative	MGI_C57BL6J_5663803	Gm43666	ENSEMBL:ENSMUSG00000104588	MGI:5663803	lncRNA gene	predicted gene 43666
3	pseudogene	33.73060	33.73353	positive	MGI_C57BL6J_5010796	Gm18611	NCBI_Gene:100417436,ENSEMBL:ENSMUSG00000106231	MGI:5010796	pseudogene	predicted gene, 18611
3	gene	33.79983	33.81486	positive	MGI_C57BL6J_1914370	Ttc14	NCBI_Gene:67120,ENSEMBL:ENSMUSG00000027677	MGI:1914370	protein coding gene	tetratricopeptide repeat domain 14
3	gene	33.81076	33.84432	negative	MGI_C57BL6J_1289263	Ccdc39	NCBI_Gene:51938,ENSEMBL:ENSMUSG00000027676	MGI:1289263	protein coding gene	coiled-coil domain containing 39
3	gene	33.81726	33.81795	positive	MGI_C57BL6J_5663277	Gm43140	ENSEMBL:ENSMUSG00000105286	MGI:5663277	lncRNA gene	predicted gene 43140
3	gene	33.86681	33.89758	negative	MGI_C57BL6J_1921204	4930431L21Rik	ENSEMBL:ENSMUSG00000105475	MGI:1921204	lncRNA gene	RIKEN cDNA 4930431L21 gene
3	gene	33.90684	33.90823	positive	MGI_C57BL6J_5625089	Gm42204	NCBI_Gene:105247022	MGI:5625089	lncRNA gene	predicted gene, 42204
3	gene	33.95620	33.95715	positive	MGI_C57BL6J_1922225	4930502C17Rik	ENSEMBL:ENSMUSG00000106584	MGI:1922225	unclassified gene	RIKEN cDNA 4930502C17 gene
3	gene	33.95907	33.95920	negative	MGI_C57BL6J_5452952	Gm23175	ENSEMBL:ENSMUSG00000077559	MGI:5452952	snoRNA gene	predicted gene, 23175
3	gene	33.97218	33.97545	negative	MGI_C57BL6J_5826470	Gm46833	NCBI_Gene:108168913	MGI:5826470	lncRNA gene	predicted gene, 46833
3	pseudogene	34.00477	34.00551	negative	MGI_C57BL6J_3642317	Gm9791	NCBI_Gene:100040232,ENSEMBL:ENSMUSG00000044434	MGI:3642317	pseudogene	predicted pseudogene 9791
3	gene	34.00880	34.01188	negative	MGI_C57BL6J_5826435	Gm46798	NCBI_Gene:108168863	MGI:5826435	lncRNA gene	predicted gene, 46798
3	gene	34.01771	34.01988	negative	MGI_C57BL6J_5663214	Gm43077	ENSEMBL:ENSMUSG00000105535	MGI:5663214	lncRNA gene	predicted gene 43077
3	gene	34.01994	34.07032	positive	MGI_C57BL6J_104860	Fxr1	NCBI_Gene:14359,ENSEMBL:ENSMUSG00000027680	MGI:104860	protein coding gene	fragile X mental retardation gene 1, autosomal homolog
3	gene	34.05434	34.05543	negative	MGI_C57BL6J_5663804	Gm43667	ENSEMBL:ENSMUSG00000105135	MGI:5663804	unclassified gene	predicted gene 43667
3	gene	34.05602	34.08135	negative	MGI_C57BL6J_1914963	Dnajc19	NCBI_Gene:67713,ENSEMBL:ENSMUSG00000027679	MGI:1914963	protein coding gene	DnaJ heat shock protein family (Hsp40) member C19
3	gene	34.07066	34.07600	positive	MGI_C57BL6J_5663805	Gm43668	ENSEMBL:ENSMUSG00000105176	MGI:5663805	unclassified gene	predicted gene 43668
3	gene	34.10427	34.68262	positive	MGI_C57BL6J_2444112	Sox2ot	NCBI_Gene:320478,ENSEMBL:ENSMUSG00000105265	MGI:2444112	lncRNA gene	SOX2 overlapping transcript (non-protein coding)
3	pseudogene	34.18331	34.18419	positive	MGI_C57BL6J_3647478	Gm5708	NCBI_Gene:435727,ENSEMBL:ENSMUSG00000105739	MGI:3647478	pseudogene	predicted gene 5708
3	gene	34.28133	34.35199	negative	MGI_C57BL6J_5621390	Gm38505	NCBI_Gene:102638008,ENSEMBL:ENSMUSG00000092196	MGI:5621390	lncRNA gene	predicted gene, 38505
3	gene	34.41544	34.41816	positive	MGI_C57BL6J_5593758	Gm34599	NCBI_Gene:102637903,ENSEMBL:ENSMUSG00000105577	MGI:5593758	lncRNA gene	predicted gene, 34599
3	gene	34.42737	34.43510	negative	MGI_C57BL6J_5141980	Gm20515	ENSEMBL:ENSMUSG00000092242	MGI:5141980	lncRNA gene	predicted gene 20515
3	gene	34.48143	34.48221	negative	MGI_C57BL6J_5579841	Gm29135	ENSEMBL:ENSMUSG00000099437	MGI:5579841	lncRNA gene	predicted gene 29135
3	gene	34.56034	34.56055	positive	MGI_C57BL6J_5530785	Gm27403	ENSEMBL:ENSMUSG00000098795	MGI:5530785	unclassified non-coding RNA gene	predicted gene, 27403
3	gene	34.56526	34.57220	negative	MGI_C57BL6J_5662832	Gm42695	ENSEMBL:ENSMUSG00000106525	MGI:5662832	lncRNA gene	predicted gene 42695
3	gene	34.59782	34.60488	negative	MGI_C57BL6J_5625090	Gm42205	NCBI_Gene:105247023,ENSEMBL:ENSMUSG00000105222	MGI:5625090	lncRNA gene	predicted gene, 42205
3	gene	34.63846	34.63854	positive	MGI_C57BL6J_3811407	Mir1897	miRBase:MI0008314,NCBI_Gene:100316679,ENSEMBL:ENSMUSG00000104797	MGI:3811407	miRNA gene	microRNA 1897
3	gene	34.64326	34.64610	positive	MGI_C57BL6J_5662829	Gm42692	ENSEMBL:ENSMUSG00000104901	MGI:5662829	unclassified gene	predicted gene 42692
3	gene	34.64999	34.65246	positive	MGI_C57BL6J_98364	Sox2	NCBI_Gene:20674,ENSEMBL:ENSMUSG00000074637	MGI:98364	protein coding gene	SRY (sex determining region Y)-box 2
3	gene	34.65318	34.65328	positive	MGI_C57BL6J_5530993	Gm27611	ENSEMBL:ENSMUSG00000098254	MGI:5530993	unclassified non-coding RNA gene	predicted gene, 27611
3	gene	34.66366	34.66429	negative	MGI_C57BL6J_5662830	Gm42693	ENSEMBL:ENSMUSG00000105284	MGI:5662830	unclassified gene	predicted gene 42693
3	gene	34.68263	34.68275	positive	MGI_C57BL6J_5663343	Gm43206	ENSEMBL:ENSMUSG00000105101	MGI:5663343	unclassified gene	predicted gene 43206
3	gene	34.68938	34.69292	positive	MGI_C57BL6J_5594100	Gm34941	NCBI_Gene:102638356	MGI:5594100	lncRNA gene	predicted gene, 34941
3	gene	34.69964	34.71666	negative	MGI_C57BL6J_3781322	Gm3143	NCBI_Gene:100041108,ENSEMBL:ENSMUSG00000105153	MGI:3781322	lncRNA gene	predicted gene 3143
3	gene	34.77208	34.78235	positive	MGI_C57BL6J_5621394	Gm38509	NCBI_Gene:102638436,ENSEMBL:ENSMUSG00000106519	MGI:5621394	lncRNA gene	predicted gene, 38509
3	gene	34.82656	34.87928	positive	MGI_C57BL6J_5434743	Gm21388	NCBI_Gene:100861998,ENSEMBL:ENSMUSG00000114832	MGI:5434743	lncRNA gene	predicted gene, 21388
3	gene	34.92254	34.92265	negative	MGI_C57BL6J_5531088	Mir6378	miRBase:MI0021909,NCBI_Gene:102466155,ENSEMBL:ENSMUSG00000098862	MGI:5531088	miRNA gene	microRNA 6378
3	gene	34.95023	34.95953	positive	MGI_C57BL6J_5594414	Gm35255	NCBI_Gene:102638771	MGI:5594414	lncRNA gene	predicted gene, 35255
3	gene	35.25646	35.27613	negative	MGI_C57BL6J_1923648	1700017M07Rik	NCBI_Gene:76398,ENSEMBL:ENSMUSG00000105651	MGI:1923648	lncRNA gene	RIKEN cDNA 1700017M07 gene
3	gene	35.31844	35.33011	positive	MGI_C57BL6J_5594584	Gm35425	NCBI_Gene:102639001	MGI:5594584	lncRNA gene	predicted gene, 35425
3	gene	35.32561	35.32570	positive	MGI_C57BL6J_5455219	Gm25442	ENSEMBL:ENSMUSG00000093499	MGI:5455219	miRNA gene	predicted gene, 25442
3	gene	35.33770	35.40595	negative	MGI_C57BL6J_5621397	Gm38512	NCBI_Gene:102638848	MGI:5621397	lncRNA gene	predicted gene, 38512
3	gene	35.41383	35.41400	positive	MGI_C57BL6J_5663215	Gm43078	ENSEMBL:ENSMUSG00000106512	MGI:5663215	unclassified gene	predicted gene 43078
3	pseudogene	35.53688	35.53780	negative	MGI_C57BL6J_3643628	Gm7733	NCBI_Gene:665655,ENSEMBL:ENSMUSG00000106496	MGI:3643628	pseudogene	predicted gene 7733
3	pseudogene	35.54589	35.54633	positive	MGI_C57BL6J_1347022	Ube2l3-ps1	ENSEMBL:ENSMUSG00000105040	MGI:1347022	pseudogene	ubiquitin-conjugating enzyme E2L 3, pseudogene 1
3	gene	35.59715	35.66616	negative	MGI_C57BL6J_3779620	Gm6639	NCBI_Gene:625963,ENSEMBL:ENSMUSG00000105662	MGI:3779620	lncRNA gene	predicted gene 6639
3	gene	35.73537	35.73548	positive	MGI_C57BL6J_5455473	Gm25696	ENSEMBL:ENSMUSG00000064834	MGI:5455473	snRNA gene	predicted gene, 25696
3	gene	35.75406	35.85628	positive	MGI_C57BL6J_1923545	Atp11b	NCBI_Gene:76295,ENSEMBL:ENSMUSG00000037400	MGI:1923545	protein coding gene	ATPase, class VI, type 11B
3	gene	35.84534	35.84590	positive	MGI_C57BL6J_5663340	Gm43203	ENSEMBL:ENSMUSG00000104897	MGI:5663340	unclassified gene	predicted gene 43203
3	gene	35.86162	35.86212	positive	MGI_C57BL6J_1915850	1110021P09Rik	NA	NA	unclassified gene	RIKEN cDNA 1110021P09 gene
3	pseudogene	35.86386	35.86507	positive	MGI_C57BL6J_3647088	Gm7741	NCBI_Gene:665667,ENSEMBL:ENSMUSG00000097713	MGI:3647088	pseudogene	predicted gene 7741
3	pseudogene	35.87565	35.88335	negative	MGI_C57BL6J_5295701	Gm20595	NCBI_Gene:100463514	MGI:5295701	pseudogene	predicted gene, 20595
3	gene	35.89211	35.93744	negative	MGI_C57BL6J_2150386	Dcun1d1	NCBI_Gene:114893,ENSEMBL:ENSMUSG00000027708	MGI:2150386	protein coding gene	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
3	gene	35.93304	35.99084	positive	MGI_C57BL6J_3802149	Gm15952	NCBI_Gene:102639351,ENSEMBL:ENSMUSG00000085655	MGI:3802149	lncRNA gene	predicted gene 15952
3	gene	35.95544	35.95626	negative	MGI_C57BL6J_1925753	8430422M14Rik	ENSEMBL:ENSMUSG00000105095	MGI:1925753	unclassified gene	RIKEN cDNA 8430422M14 gene
3	gene	35.95629	36.00068	negative	MGI_C57BL6J_1919289	Mccc1	NCBI_Gene:72039,ENSEMBL:ENSMUSG00000027709	MGI:1919289	protein coding gene	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
3	gene	35.96938	35.97203	negative	MGI_C57BL6J_5663217	Gm43080	ENSEMBL:ENSMUSG00000105556	MGI:5663217	unclassified gene	predicted gene 43080
3	pseudogene	35.97377	35.97409	positive	MGI_C57BL6J_3704213	B230207O21Rik	ENSEMBL:ENSMUSG00000106096	MGI:3704213	pseudogene	RIKEN cDNA B230207O21 gene
3	gene	35.99983	36.02511	positive	MGI_C57BL6J_3590669	Mccc1os	NCBI_Gene:654424,ENSEMBL:ENSMUSG00000086392	MGI:3590669	antisense lncRNA gene	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand
3	gene	36.00724	36.05355	negative	MGI_C57BL6J_2681852	Ccdc144b	NCBI_Gene:241943,ENSEMBL:ENSMUSG00000047696	MGI:2681852	protein coding gene	coiled-coil domain containing 144B
3	gene	36.06598	36.09286	positive	MGI_C57BL6J_1914272	Acad9	NCBI_Gene:229211,ENSEMBL:ENSMUSG00000027710	MGI:1914272	protein coding gene	acyl-Coenzyme A dehydrogenase family, member 9
3	gene	36.08886	36.09145	positive	MGI_C57BL6J_5663216	Gm43079	ENSEMBL:ENSMUSG00000105055	MGI:5663216	lncRNA gene	predicted gene 43079
3	gene	36.09718	36.09914	positive	MGI_C57BL6J_5663342	Gm43205	ENSEMBL:ENSMUSG00000105419	MGI:5663342	unclassified gene	predicted gene 43205
3	gene	36.15102	36.17034	positive	MGI_C57BL6J_1098769	Zfp267	NCBI_Gene:241944,ENSEMBL:ENSMUSG00000033883	MGI:1098769	protein coding gene	zinc finger protein 267
3	gene	36.17942	36.22231	negative	MGI_C57BL6J_2677633	Qrfpr	NCBI_Gene:229214,ENSEMBL:ENSMUSG00000058400	MGI:2677633	protein coding gene	pyroglutamylated RFamide peptide receptor
3	gene	36.20329	36.20562	positive	MGI_C57BL6J_5663392	Gm43255	ENSEMBL:ENSMUSG00000104568	MGI:5663392	lncRNA gene	predicted gene 43255
3	pseudogene	36.21381	36.21476	negative	MGI_C57BL6J_5011078	Gm18893	NCBI_Gene:100417907,ENSEMBL:ENSMUSG00000106180	MGI:5011078	pseudogene	predicted gene, 18893
3	gene	36.27233	36.27896	negative	MGI_C57BL6J_5625093	Gm42208	NCBI_Gene:105247026,ENSEMBL:ENSMUSG00000106140	MGI:5625093	lncRNA gene	predicted gene, 42208
3	gene	36.35422	36.40651	negative	MGI_C57BL6J_5625094	Gm42209	NCBI_Gene:105247027	MGI:5625094	lncRNA gene	predicted gene, 42209
3	pseudogene	36.39470	36.39520	negative	MGI_C57BL6J_5010020	Gm17835	NCBI_Gene:100415952,ENSEMBL:ENSMUSG00000105281	MGI:5010020	pseudogene	predicted gene, 17835
3	pseudogene	36.42158	36.42212	positive	MGI_C57BL6J_5010072	Gm17887	NCBI_Gene:100416041,ENSEMBL:ENSMUSG00000105792	MGI:5010072	pseudogene	predicted gene, 17887
3	gene	36.44892	36.47589	negative	MGI_C57BL6J_106008	Anxa5	NCBI_Gene:11747,ENSEMBL:ENSMUSG00000027712	MGI:106008	protein coding gene	annexin A5
3	gene	36.47546	36.47552	negative	MGI_C57BL6J_5530854	Mir7009	miRBase:MI0022858,NCBI_Gene:102466786,ENSEMBL:ENSMUSG00000098808	MGI:5530854	miRNA gene	microRNA 7009
3	gene	36.47594	36.48230	positive	MGI_C57BL6J_1919532	1810062G17Rik	NCBI_Gene:72282,ENSEMBL:ENSMUSG00000027713	MGI:1919532	protein coding gene	RIKEN cDNA 1810062G17 gene
3	gene	36.49980	36.50681	negative	MGI_C57BL6J_3650340	Gm11548	NCBI_Gene:329623,ENSEMBL:ENSMUSG00000085320	MGI:3650340	lncRNA gene	predicted gene 11548
3	gene	36.51506	36.52181	negative	MGI_C57BL6J_3650339	Gm11549	NCBI_Gene:100503068,ENSEMBL:ENSMUSG00000085007	MGI:3650339	lincRNA gene	predicted gene 11549
3	gene	36.52922	36.53233	negative	MGI_C57BL6J_5663674	Gm43537	ENSEMBL:ENSMUSG00000105022	MGI:5663674	unclassified gene	predicted gene 43537
3	pseudogene	36.53917	36.54010	negative	MGI_C57BL6J_3650891	Gm11550	NCBI_Gene:665709,ENSEMBL:ENSMUSG00000083388	MGI:3650891	pseudogene	predicted gene 11550
3	gene	36.55261	36.56573	positive	MGI_C57BL6J_1355319	Exosc9	NCBI_Gene:50911,ENSEMBL:ENSMUSG00000027714	MGI:1355319	protein coding gene	exosome component 9
3	gene	36.56486	36.57303	negative	MGI_C57BL6J_108069	Ccna2	NCBI_Gene:12428,ENSEMBL:ENSMUSG00000027715	MGI:108069	protein coding gene	cyclin A2
3	gene	36.57314	36.61349	negative	MGI_C57BL6J_1918742	Bbs7	NCBI_Gene:71492,ENSEMBL:ENSMUSG00000037325	MGI:1918742	protein coding gene	Bardet-Biedl syndrome 7 (human)
3	gene	36.62048	36.69022	negative	MGI_C57BL6J_109526	Trpc3	NCBI_Gene:22065,ENSEMBL:ENSMUSG00000027716	MGI:109526	protein coding gene	transient receptor potential cation channel, subfamily C, member 3
3	gene	36.65407	36.65501	negative	MGI_C57BL6J_5595015	Gm35856	NCBI_Gene:102639576	MGI:5595015	lncRNA gene	predicted gene, 35856
3	pseudogene	36.69480	36.69505	negative	MGI_C57BL6J_3651607	Gm12377	ENSEMBL:ENSMUSG00000082548	MGI:3651607	pseudogene	predicted gene 12377
3	pseudogene	36.82435	36.82506	negative	MGI_C57BL6J_3651608	Gm12376	NCBI_Gene:100417988,ENSEMBL:ENSMUSG00000084027	MGI:3651608	pseudogene	predicted gene 12376
3	gene	36.86306	37.05303	positive	MGI_C57BL6J_2444631	4932438A13Rik	NCBI_Gene:229227,ENSEMBL:ENSMUSG00000037270	MGI:2444631	protein coding gene	RIKEN cDNA 4932438A13 gene
3	gene	37.05221	37.06003	negative	MGI_C57BL6J_3650531	Gm12531	ENSEMBL:ENSMUSG00000086090	MGI:3650531	lncRNA gene	predicted gene 12531
3	gene	37.06309	37.12193	positive	MGI_C57BL6J_103258	Adad1	NCBI_Gene:21744,ENSEMBL:ENSMUSG00000027719	MGI:103258	protein coding gene	adenosine deaminase domain containing 1 (testis specific)
3	pseudogene	37.07756	37.07891	positive	MGI_C57BL6J_3651489	Gm12582	NCBI_Gene:652987,ENSEMBL:ENSMUSG00000081705	MGI:3651489	pseudogene	predicted gene 12582
3	pseudogene	37.10808	37.10933	positive	MGI_C57BL6J_3651485	Gm12583	NCBI_Gene:100416060,ENSEMBL:ENSMUSG00000082878	MGI:3651485	pseudogene	predicted gene 12583
3	pseudogene	37.11673	37.11784	positive	MGI_C57BL6J_3651486	Gm12584	ENSEMBL:ENSMUSG00000083857	MGI:3651486	pseudogene	predicted gene 12584
3	gene	37.12052	37.12596	negative	MGI_C57BL6J_96548	Il2	NCBI_Gene:16183,ENSEMBL:ENSMUSG00000027720	MGI:96548	protein coding gene	interleukin 2
3	gene	37.16972	37.17665	negative	MGI_C57BL6J_5595159	Gm36000	NCBI_Gene:102639768	MGI:5595159	lncRNA gene	predicted gene, 36000
3	gene	37.18218	37.18860	positive	MGI_C57BL6J_3650618	Gm12532	NCBI_Gene:102639848,ENSEMBL:ENSMUSG00000084754	MGI:3650618	lncRNA gene	predicted gene 12532
3	gene	37.22276	37.23264	negative	MGI_C57BL6J_1890474	Il21	NCBI_Gene:60505,ENSEMBL:ENSMUSG00000027718	MGI:1890474	protein coding gene	interleukin 21
3	gene	37.22538	37.22711	positive	MGI_C57BL6J_5595327	Gm36168	NCBI_Gene:102639985	MGI:5595327	lncRNA gene	predicted gene, 36168
3	gene	37.23133	37.23247	positive	MGI_C57BL6J_3650303	Gm12534	ENSEMBL:ENSMUSG00000086517	MGI:3650303	lncRNA gene	predicted gene 12534
3	gene	37.23287	37.23334	positive	MGI_C57BL6J_5663959	Gm43822	ENSEMBL:ENSMUSG00000104998	MGI:5663959	unclassified gene	predicted gene 43822
3	gene	37.25678	37.25689	negative	MGI_C57BL6J_5453946	Gm24169	ENSEMBL:ENSMUSG00000094007	MGI:5453946	miRNA gene	predicted gene, 24169
3	gene	37.30775	37.31271	negative	MGI_C57BL6J_2677454	Cetn4	NCBI_Gene:207175,ENSEMBL:ENSMUSG00000045031	MGI:2677454	protein coding gene	centrin 4
3	gene	37.31249	37.32145	positive	MGI_C57BL6J_2686651	Bbs12	NCBI_Gene:241950,ENSEMBL:ENSMUSG00000051444	MGI:2686651	protein coding gene	Bardet-Biedl syndrome 12 (human)
3	gene	37.31252	37.40487	positive	MGI_C57BL6J_5663576	Gm43439	ENSEMBL:ENSMUSG00000106407	MGI:5663576	lncRNA gene	predicted gene 43439
3	pseudogene	37.31253	37.32919	positive	MGI_C57BL6J_3651849	Gm12540	NCBI_Gene:102640067,ENSEMBL:ENSMUSG00000083353	MGI:3651849	pseudogene	predicted gene 12540
3	gene	37.33329	37.35103	negative	MGI_C57BL6J_3649376	Fgf2os	NCBI_Gene:329626,ENSEMBL:ENSMUSG00000054779	MGI:3649376	antisense lncRNA gene	fibroblast growth factor 2, opposite strand
3	gene	37.33902	37.34152	positive	MGI_C57BL6J_5663625	Gm43488	ENSEMBL:ENSMUSG00000105063	MGI:5663625	unclassified gene	predicted gene 43488
3	gene	37.34835	37.41011	positive	MGI_C57BL6J_95516	Fgf2	NCBI_Gene:14173,ENSEMBL:ENSMUSG00000037225	MGI:95516	protein coding gene	fibroblast growth factor 2
3	gene	37.39221	37.39510	negative	MGI_C57BL6J_5663060	Gm42923	ENSEMBL:ENSMUSG00000105134	MGI:5663060	unclassified gene	predicted gene 42923
3	gene	37.40491	37.42021	negative	MGI_C57BL6J_2387618	Nudt6	NCBI_Gene:229228,ENSEMBL:ENSMUSG00000050174	MGI:2387618	protein coding gene	nudix (nucleoside diphosphate linked moiety X)-type motif 6
3	gene	37.41990	37.57910	positive	MGI_C57BL6J_1927170	Spata5	NCBI_Gene:57815,ENSEMBL:ENSMUSG00000027722	MGI:1927170	protein coding gene	spermatogenesis associated 5
3	gene	37.48883	37.49479	positive	MGI_C57BL6J_5663621	Gm43484	ENSEMBL:ENSMUSG00000106166	MGI:5663621	unclassified gene	predicted gene 43484
3	gene	37.54188	37.60239	negative	MGI_C57BL6J_5595571	Gm36412	NCBI_Gene:102640314	MGI:5595571	lncRNA gene	predicted gene, 36412
3	pseudogene	37.55618	37.55650	negative	MGI_C57BL6J_3652207	Gm12564	ENSEMBL:ENSMUSG00000080723	MGI:3652207	pseudogene	predicted gene 12564
3	pseudogene	37.59942	37.60007	negative	MGI_C57BL6J_3652206	Gm12565	NCBI_Gene:665778,ENSEMBL:ENSMUSG00000081093	MGI:3652206	pseudogene	predicted gene 12565
3	gene	37.60989	37.61528	positive	MGI_C57BL6J_1923197	4930594O21Rik	NCBI_Gene:75947,ENSEMBL:ENSMUSG00000085677	MGI:1923197	lncRNA gene	RIKEN cDNA 4930594O21 gene
3	gene	37.63858	37.64066	negative	MGI_C57BL6J_5663059	Gm42922	ENSEMBL:ENSMUSG00000104605	MGI:5663059	unclassified gene	predicted gene 42922
3	gene	37.63995	37.64460	positive	MGI_C57BL6J_1345139	Spry1	NCBI_Gene:24063,ENSEMBL:ENSMUSG00000037211	MGI:1345139	protein coding gene	sprouty RTK signaling antagonist 1
3	gene	37.64461	37.64795	positive	MGI_C57BL6J_5663957	Gm43820	ENSEMBL:ENSMUSG00000106062	MGI:5663957	unclassified gene	predicted gene 43820
3	gene	37.65268	37.65652	negative	MGI_C57BL6J_5826436	Gm46799	NCBI_Gene:108168864	MGI:5826436	lncRNA gene	predicted gene, 46799
3	gene	37.69046	37.69486	negative	MGI_C57BL6J_5625096	Gm42211	NCBI_Gene:105247029	MGI:5625096	lncRNA gene	predicted gene, 42211
3	gene	37.70802	37.71121	positive	MGI_C57BL6J_5663551	Gm43414	ENSEMBL:ENSMUSG00000104935	MGI:5663551	unclassified gene	predicted gene 43414
3	gene	37.71419	37.72449	negative	MGI_C57BL6J_3646006	Gm5148	NCBI_Gene:381438,ENSEMBL:ENSMUSG00000058174	MGI:3646006	protein coding gene	predicted gene 5148
3	pseudogene	37.71471	37.71522	positive	MGI_C57BL6J_3705429	Rps23-ps1	NCBI_Gene:100038875,ENSEMBL:ENSMUSG00000100755	MGI:3705429	pseudogene	ribosomal protein S23, pseudogene 1
3	gene	37.72423	37.74132	positive	MGI_C57BL6J_5595779	Gm36620	NCBI_Gene:102640592	MGI:5595779	lncRNA gene	predicted gene, 36620
3	pseudogene	37.73468	37.73514	positive	MGI_C57BL6J_3643738	Rpl31-ps15	NCBI_Gene:626367,ENSEMBL:ENSMUSG00000097304	MGI:3643738	pseudogene	ribosomal protein L31, pseudogene 15
3	gene	37.75320	37.77440	positive	MGI_C57BL6J_5625095	Gm42210	NCBI_Gene:105247028	MGI:5625095	lncRNA gene	predicted gene, 42210
3	gene	37.76104	37.76730	positive	MGI_C57BL6J_5663058	Gm42921	ENSEMBL:ENSMUSG00000106441	MGI:5663058	lncRNA gene	predicted gene 42921
3	gene	37.80254	37.80265	negative	MGI_C57BL6J_5456181	Gm26404	ENSEMBL:ENSMUSG00000089123	MGI:5456181	snoRNA gene	predicted gene, 26404
3	gene	37.82822	37.84829	positive	MGI_C57BL6J_1925294	4930556A17Rik	NCBI_Gene:102640520	MGI:1925294	lncRNA gene	RIKEN cDNA 4930556A17 gene
3	gene	37.83847	37.83957	positive	MGI_C57BL6J_5662889	Gm42752	ENSEMBL:ENSMUSG00000106621	MGI:5662889	unclassified gene	predicted gene 42752
3	gene	37.84180	37.84307	positive	MGI_C57BL6J_5662890	Gm42753	ENSEMBL:ENSMUSG00000105252	MGI:5662890	unclassified gene	predicted gene 42753
3	gene	37.89881	37.99273	positive	MGI_C57BL6J_5434111	Gm20755	NCBI_Gene:626410,ENSEMBL:ENSMUSG00000106461	MGI:5434111	lncRNA gene	predicted gene, 20755
3	pseudogene	37.95961	37.96009	negative	MGI_C57BL6J_3643378	Gm7799	ENSEMBL:ENSMUSG00000087457	MGI:3643378	pseudogene	predicted gene 7799
3	gene	37.98279	37.98335	positive	MGI_C57BL6J_5662888	Gm42751	ENSEMBL:ENSMUSG00000105099	MGI:5662888	unclassified gene	predicted gene 42751
3	gene	37.99511	37.99524	negative	MGI_C57BL6J_5452676	Gm22899	ENSEMBL:ENSMUSG00000077728	MGI:5452676	snoRNA gene	predicted gene, 22899
3	gene	38.09463	38.13019	negative	MGI_C57BL6J_5663958	Gm43821	ENSEMBL:ENSMUSG00000105219	MGI:5663958	lncRNA gene	predicted gene 43821
3	pseudogene	38.10123	38.10798	negative	MGI_C57BL6J_3643358	Rpl21-ps10	NCBI_Gene:665821,ENSEMBL:ENSMUSG00000105359	MGI:3643358	pseudogene	ribosomal protein L21, pseudogene 10
3	gene	38.15191	38.15915	positive	MGI_C57BL6J_5595839	Gm36680	NCBI_Gene:102640666	MGI:5595839	lncRNA gene	predicted gene, 36680
3	gene	38.20315	38.20812	negative	MGI_C57BL6J_1918592	5430434I15Rik	NCBI_Gene:71342,ENSEMBL:ENSMUSG00000106002	MGI:1918592	lncRNA gene	RIKEN cDNA 5430434I15 gene
3	pseudogene	38.22345	38.22382	positive	MGI_C57BL6J_3781143	Gm2965	NCBI_Gene:100040785,ENSEMBL:ENSMUSG00000105943	MGI:3781143	pseudogene	predicted gene 2965
3	pseudogene	38.25402	38.25480	positive	MGI_C57BL6J_5010140	Gm17955	NCBI_Gene:100416169	MGI:5010140	pseudogene	predicted gene, 17955
3	gene	38.26784	38.26808	negative	MGI_C57BL6J_5455351	Gm25574	ENSEMBL:ENSMUSG00000092986	MGI:5455351	unclassified non-coding RNA gene	predicted gene, 25574
3	gene	38.36615	38.36888	negative	MGI_C57BL6J_5625098	Gm42213	NCBI_Gene:105247031	MGI:5625098	lncRNA gene	predicted gene, 42213
3	gene	38.36940	38.37364	positive	MGI_C57BL6J_5663057	Gm42920	ENSEMBL:ENSMUSG00000106008	MGI:5663057	lncRNA gene	predicted gene 42920
3	gene	38.41897	38.42015	negative	MGI_C57BL6J_1917958	3830422I06Rik	ENSEMBL:ENSMUSG00000106485	MGI:1917958	unclassified gene	RIKEN cDNA 3830422I06 gene
3	gene	38.42655	38.44387	negative	MGI_C57BL6J_5595982	Gm36823	NCBI_Gene:102640855,ENSEMBL:ENSMUSG00000105516	MGI:5595982	lncRNA gene	predicted gene, 36823
3	pseudogene	38.43895	38.43984	negative	MGI_C57BL6J_3646285	Gm7815	NCBI_Gene:665838,ENSEMBL:ENSMUSG00000106201	MGI:3646285	pseudogene	predicted gene 7815
3	gene	38.44926	38.48486	negative	MGI_C57BL6J_2139777	Ankrd50	NCBI_Gene:99696,ENSEMBL:ENSMUSG00000044864	MGI:2139777	protein coding gene	ankyrin repeat domain 50
3	pseudogene	38.55797	38.55886	negative	MGI_C57BL6J_3779766	Gm7824	NCBI_Gene:665855,ENSEMBL:ENSMUSG00000105360	MGI:3779766	pseudogene	predicted gene 7824
3	gene	38.55811	38.55821	negative	MGI_C57BL6J_5454239	Gm24462	ENSEMBL:ENSMUSG00000076385	MGI:5454239	miRNA gene	predicted gene, 24462
3	gene	38.61425	38.61556	positive	MGI_C57BL6J_5663675	Gm43538	ENSEMBL:ENSMUSG00000106168	MGI:5663675	lncRNA gene	predicted gene 43538
3	gene	38.66361	38.70922	positive	MGI_C57BL6J_5589038	Gm29879	NCBI_Gene:102631576	MGI:5589038	lncRNA gene	predicted gene, 29879
3	gene	38.76048	38.76195	negative	MGI_C57BL6J_5589118	Gm29959	NCBI_Gene:102631683	MGI:5589118	lncRNA gene	predicted gene, 29959
3	gene	38.87457	38.88826	negative	MGI_C57BL6J_2441892	C230034O21Rik	NCBI_Gene:102632538,ENSEMBL:ENSMUSG00000086181	MGI:2441892	lncRNA gene	RIKEN cDNA C230034O21 gene
3	gene	38.88563	39.01199	positive	MGI_C57BL6J_3045256	Fat4	NCBI_Gene:329628,ENSEMBL:ENSMUSG00000046743	MGI:3045256	protein coding gene	FAT atypical cadherin 4
3	gene	39.00860	39.00968	negative	MGI_C57BL6J_5663676	Gm43539	ENSEMBL:ENSMUSG00000105910	MGI:5663676	lncRNA gene	predicted gene 43539
3	pseudogene	39.12853	39.12891	negative	MGI_C57BL6J_5663445	Gm43308	ENSEMBL:ENSMUSG00000104792	MGI:5663445	pseudogene	predicted gene 43308
3	gene	39.15083	39.15967	negative	MGI_C57BL6J_5589170	Gm30011	NCBI_Gene:102631750	MGI:5589170	lncRNA gene	predicted gene, 30011
3	pseudogene	39.21756	39.21785	negative	MGI_C57BL6J_5663145	Gm43008	ENSEMBL:ENSMUSG00000107333	MGI:5663145	pseudogene	predicted gene 43008
3	gene	39.27713	39.30593	positive	MGI_C57BL6J_5625099	Gm42214	NCBI_Gene:105247032	MGI:5625099	lncRNA gene	predicted gene, 42214
3	pseudogene	39.35737	39.35913	negative	MGI_C57BL6J_3704215	Gm9845	NCBI_Gene:100040853,ENSEMBL:ENSMUSG00000050533	MGI:3704215	pseudogene	predicted pseudogene 9845
3	pseudogene	39.44389	39.44435	positive	MGI_C57BL6J_5295673	Gm20566	NCBI_Gene:100047050	MGI:5295673	pseudogene	predicted gene, 20566
3	gene	39.46078	39.59865	positive	MGI_C57BL6J_5589222	Gm30063	NCBI_Gene:102631823	MGI:5589222	lncRNA gene	predicted gene, 30063
3	gene	39.52552	39.53415	negative	MGI_C57BL6J_5625100	Gm42215	NCBI_Gene:105247033	MGI:5625100	lncRNA gene	predicted gene, 42215
3	gene	39.63596	39.63608	negative	MGI_C57BL6J_4422060	n-R5s195	ENSEMBL:ENSMUSG00000093952	MGI:4422060	rRNA gene	nuclear encoded rRNA 5S 195
3	gene	39.63606	39.63878	positive	MGI_C57BL6J_5662918	Gm42781	ENSEMBL:ENSMUSG00000106786	MGI:5662918	unclassified gene	predicted gene 42781
3	gene	39.66629	39.66645	positive	MGI_C57BL6J_5453573	Gm23796	ENSEMBL:ENSMUSG00000065945	MGI:5453573	snRNA gene	predicted gene, 23796
3	gene	39.71315	39.72565	positive	MGI_C57BL6J_5826471	Gm46834	NCBI_Gene:108168914	MGI:5826471	lncRNA gene	predicted gene, 46834
3	gene	39.79963	39.79972	negative	MGI_C57BL6J_5453608	Gm23831	ENSEMBL:ENSMUSG00000089520	MGI:5453608	snoRNA gene	predicted gene, 23831
3	pseudogene	39.82048	39.82076	negative	MGI_C57BL6J_5662923	Gm42786	ENSEMBL:ENSMUSG00000106846	MGI:5662923	pseudogene	predicted gene 42786
3	pseudogene	39.82358	39.82741	positive	MGI_C57BL6J_5662922	Gm42785	ENSEMBL:ENSMUSG00000106948	MGI:5662922	pseudogene	predicted gene 42785
3	gene	40.42571	40.45380	negative	MGI_C57BL6J_5589343	Gm30184	NCBI_Gene:102632001	MGI:5589343	lncRNA gene	predicted gene, 30184
3	gene	40.45843	40.46115	positive	MGI_C57BL6J_5625101	Gm42216	NCBI_Gene:105247034	MGI:5625101	lncRNA gene	predicted gene, 42216
3	gene	40.48090	40.48573	positive	MGI_C57BL6J_5625102	Gm42217	NCBI_Gene:105247035	MGI:5625102	lncRNA gene	predicted gene, 42217
3	gene	40.48702	40.48993	positive	MGI_C57BL6J_5826438	Gm46801	NCBI_Gene:108168866	MGI:5826438	lncRNA gene	predicted gene, 46801
3	gene	40.50487	40.52291	negative	MGI_C57BL6J_1919477	1700017G19Rik	NCBI_Gene:100040882,ENSEMBL:ENSMUSG00000037884	MGI:1919477	lncRNA gene	RIKEN cDNA 1700017G19 gene
3	gene	40.50998	40.51183	positive	MGI_C57BL6J_5826437	Gm46800	NCBI_Gene:108168865	MGI:5826437	lncRNA gene	predicted gene, 46800
3	gene	40.51882	40.51889	positive	MGI_C57BL6J_5453587	Gm23810	ENSEMBL:ENSMUSG00000092891	MGI:5453587	miRNA gene	predicted gene, 23810
3	gene	40.53129	40.70478	positive	MGI_C57BL6J_2443752	Intu	NCBI_Gene:380614,ENSEMBL:ENSMUSG00000060798	MGI:2443752	protein coding gene	inturned planar cell polarity protein
3	pseudogene	40.65887	40.65917	negative	MGI_C57BL6J_3801939	Gm16114	ENSEMBL:ENSMUSG00000089932	MGI:3801939	pseudogene	predicted gene 16114
3	gene	40.70885	40.72610	positive	MGI_C57BL6J_1920583	Slc25a31	NCBI_Gene:73333,ENSEMBL:ENSMUSG00000069041	MGI:1920583	protein coding gene	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 31
3	gene	40.74440	40.79610	positive	MGI_C57BL6J_107422	Hspa4l	NCBI_Gene:18415,ENSEMBL:ENSMUSG00000025757	MGI:107422	protein coding gene	heat shock protein 4 like
3	gene	40.79364	40.79846	positive	MGI_C57BL6J_1918107	4921509J17Rik	NA	NA	unclassified gene	RIKEN cDNA 4921509J17 gene
3	gene	40.79995	40.81688	positive	MGI_C57BL6J_101783	Plk4	NCBI_Gene:20873,ENSEMBL:ENSMUSG00000025758	MGI:101783	protein coding gene	polo like kinase 4
3	gene	40.81810	40.84689	negative	MGI_C57BL6J_1919425	Mfsd8	NCBI_Gene:72175,ENSEMBL:ENSMUSG00000025759	MGI:1919425	protein coding gene	major facilitator superfamily domain containing 8
3	pseudogene	40.84682	40.87561	positive	MGI_C57BL6J_3780180	Gm2011	NCBI_Gene:100039027,ENSEMBL:ENSMUSG00000107741	MGI:3780180	pseudogene	predicted gene 2011
3	gene	40.84697	40.93814	positive	MGI_C57BL6J_1915468	Abhd18	NCBI_Gene:269423,ENSEMBL:ENSMUSG00000037818	MGI:1915468	protein coding gene	abhydrolase domain containing 18
3	pseudogene	40.85348	40.85529	negative	MGI_C57BL6J_3795712	Gm10731	NCBI_Gene:100039043,ENSEMBL:ENSMUSG00000074620	MGI:3795712	pseudogene	predicted gene 10731
3	gene	40.86395	40.86505	negative	MGI_C57BL6J_5690528	Gm44136	ENSEMBL:ENSMUSG00000107524	MGI:5690528	unclassified gene	predicted gene, 44136
3	gene	40.87665	40.89455	negative	MGI_C57BL6J_3648839	6430590A07Rik	NCBI_Gene:619719,ENSEMBL:ENSMUSG00000097583	MGI:3648839	lncRNA gene	RIKEN cDNA 6430590A07 gene
3	pseudogene	40.87698	40.87725	negative	MGI_C57BL6J_5753100	Gm44524	ENSEMBL:ENSMUSG00000107892	MGI:5753100	pseudogene	predicted gene 44524
3	gene	40.90020	40.90254	negative	MGI_C57BL6J_1920547	1700034I23Rik	NCBI_Gene:73297,ENSEMBL:ENSMUSG00000074619	MGI:1920547	protein coding gene	RIKEN cDNA 1700034I23 gene
3	gene	40.94869	40.94986	negative	MGI_C57BL6J_5826439	Gm46802	NCBI_Gene:108168867	MGI:5826439	lncRNA gene	predicted gene, 46802
3	gene	40.94972	41.04023	positive	MGI_C57BL6J_1914604	Larp1b	NCBI_Gene:214048,ENSEMBL:ENSMUSG00000025762	MGI:1914604	protein coding gene	La ribonucleoprotein domain family, member 1B
3	gene	40.97850	41.00609	positive	MGI_C57BL6J_5589448	Gm30289	NA	NA	protein coding gene	predicted gene%2c 30289
3	gene	40.99269	40.99285	positive	MGI_C57BL6J_5451820	Gm22043	ENSEMBL:ENSMUSG00000064927	MGI:5451820	snRNA gene	predicted gene, 22043
3	gene	41.00243	41.00609	positive	MGI_C57BL6J_5662573	Gm42436	ENSEMBL:ENSMUSG00000105517	MGI:5662573	unclassified gene	predicted gene 42436
3	gene	41.00552	41.00644	negative	MGI_C57BL6J_5662574	Gm42437	ENSEMBL:ENSMUSG00000105674	MGI:5662574	unclassified gene	predicted gene 42437
3	gene	41.06633	41.08305	negative	MGI_C57BL6J_1918054	Pgrmc2	NCBI_Gene:70804,ENSEMBL:ENSMUSG00000049940	MGI:1918054	protein coding gene	progesterone receptor membrane component 2
3	gene	41.15803	41.17346	negative	MGI_C57BL6J_5622923	Gm40038	NCBI_Gene:105244429,ENSEMBL:ENSMUSG00000105258	MGI:5622923	lncRNA gene	predicted gene, 40038
3	gene	41.28606	41.29059	negative	MGI_C57BL6J_3642810	Gm16508	ENSEMBL:ENSMUSG00000106000	MGI:3642810	lncRNA gene	predicted gene 16508
3	gene	41.35415	41.40446	positive	MGI_C57BL6J_1920712	1700052H01Rik	NCBI_Gene:73462,ENSEMBL:ENSMUSG00000105297	MGI:1920712	lncRNA gene	RIKEN cDNA 1700052H01 gene
3	gene	41.44134	41.44147	negative	MGI_C57BL6J_5455264	Gm25487	ENSEMBL:ENSMUSG00000089350	MGI:5455264	snoRNA gene	predicted gene, 25487
3	gene	41.47491	41.48400	negative	MGI_C57BL6J_5622925	Gm40040	NCBI_Gene:105244431,ENSEMBL:ENSMUSG00000105260	MGI:5622925	lncRNA gene	predicted gene, 40040
3	gene	41.48402	41.49320	negative	MGI_C57BL6J_1925956	Platr4	NCBI_Gene:78706,ENSEMBL:ENSMUSG00000097639	MGI:1925956	lncRNA gene	pluripotency associated transcript 4
3	pseudogene	41.48569	41.48641	positive	MGI_C57BL6J_3648422	Gm6069	NCBI_Gene:606542,ENSEMBL:ENSMUSG00000104616	MGI:3648422	pseudogene	predicted gene 6069
3	gene	41.50093	41.52847	negative	MGI_C57BL6J_1925898	2400006E01Rik	NCBI_Gene:78648,ENSEMBL:ENSMUSG00000106223	MGI:1925898	lncRNA gene	RIKEN cDNA 2400006E01 gene
3	gene	41.55573	41.61686	positive	MGI_C57BL6J_1925835	Jade1	NCBI_Gene:269424,ENSEMBL:ENSMUSG00000025764	MGI:1925835	protein coding gene	jade family PHD finger 1
3	gene	41.56050	41.56370	negative	MGI_C57BL6J_5590425	Gm31266	NCBI_Gene:105244433,ENSEMBL:ENSMUSG00000103843	MGI:5590425	lncRNA gene	predicted gene, 31266
3	gene	41.61755	41.62371	negative	MGI_C57BL6J_5622926	Gm40041	NCBI_Gene:105244432	MGI:5622926	lncRNA gene	predicted gene, 40041
3	gene	41.62671	41.74253	negative	MGI_C57BL6J_1914411	Sclt1	NCBI_Gene:67161,ENSEMBL:ENSMUSG00000059834	MGI:1914411	protein coding gene	sodium channel and clathrin linker 1
3	gene	41.64812	41.64925	negative	MGI_C57BL6J_5611275	Gm38047	ENSEMBL:ENSMUSG00000102436	MGI:5611275	unclassified gene	predicted gene, 38047
3	gene	41.74261	41.80332	positive	MGI_C57BL6J_1289213	D3Ertd751e	NCBI_Gene:73852,ENSEMBL:ENSMUSG00000025766	MGI:1289213	protein coding gene	DNA segment, Chr 3, ERATO Doi 751, expressed
3	gene	41.77318	41.77579	positive	MGI_C57BL6J_5610496	Gm37268	ENSEMBL:ENSMUSG00000103952	MGI:5610496	unclassified gene	predicted gene, 37268
3	pseudogene	41.97607	41.97812	negative	MGI_C57BL6J_3645044	Gm7899	NCBI_Gene:666031,ENSEMBL:ENSMUSG00000103823	MGI:3645044	pseudogene	predicted gene 7899
3	pseudogene	41.97633	41.97812	positive	MGI_C57BL6J_5610576	Gm37348	ENSEMBL:ENSMUSG00000102972	MGI:5610576	pseudogene	predicted gene, 37348
3	gene	42.16387	42.16764	positive	MGI_C57BL6J_5611074	Gm37846	ENSEMBL:ENSMUSG00000102610	MGI:5611074	unclassified gene	predicted gene, 37846
3	pseudogene	42.36263	42.36278	negative	MGI_C57BL6J_5611502	Gm38274	ENSEMBL:ENSMUSG00000104089	MGI:5611502	pseudogene	predicted gene, 38274
3	gene	42.57246	42.57300	positive	MGI_C57BL6J_5610761	Gm37533	ENSEMBL:ENSMUSG00000103426	MGI:5610761	unclassified gene	predicted gene, 37533
3	pseudogene	42.58511	42.58560	negative	MGI_C57BL6J_5611272	Gm38044	ENSEMBL:ENSMUSG00000104294	MGI:5611272	pseudogene	predicted gene, 38044
3	pseudogene	43.25039	43.25093	positive	MGI_C57BL6J_3780131	Gm9723	NCBI_Gene:677788,ENSEMBL:ENSMUSG00000102149	MGI:3780131	pseudogene	predicted gene 9723
3	pseudogene	43.39077	43.39194	negative	MGI_C57BL6J_5011050	Gm18865	NCBI_Gene:100417854,ENSEMBL:ENSMUSG00000102334	MGI:5011050	pseudogene	predicted gene, 18865
3	gene	43.54717	43.54828	positive	MGI_C57BL6J_5610204	Gm36976	ENSEMBL:ENSMUSG00000104303	MGI:5610204	unclassified gene	predicted gene, 36976
3	pseudogene	43.76405	43.76476	negative	MGI_C57BL6J_5588898	Gm29739	NCBI_Gene:101055891,ENSEMBL:ENSMUSG00000104083	MGI:5588898	pseudogene	predicted gene, 29739
3	gene	43.92557	43.92586	positive	MGI_C57BL6J_5455491	Gm25714	ENSEMBL:ENSMUSG00000089251	MGI:5455491	unclassified non-coding RNA gene	predicted gene, 25714
3	pseudogene	43.92760	43.92795	negative	MGI_C57BL6J_5591334	Gm32175	ENSEMBL:ENSMUSG00000102792	MGI:5591334	pseudogene	predicted gene, 32175
3	gene	43.95572	43.95592	positive	MGI_C57BL6J_5610974	Gm37746	ENSEMBL:ENSMUSG00000103148	MGI:5610974	unclassified gene	predicted gene, 37746
3	pseudogene	44.49350	44.49390	negative	MGI_C57BL6J_5610593	Gm37365	ENSEMBL:ENSMUSG00000104013	MGI:5610593	pseudogene	predicted gene, 37365
3	gene	44.65990	44.66315	positive	MGI_C57BL6J_5611356	Gm38128	ENSEMBL:ENSMUSG00000104051	MGI:5611356	unclassified gene	predicted gene, 38128
3	pseudogene	44.71813	44.71851	negative	MGI_C57BL6J_5610825	Gm37597	ENSEMBL:ENSMUSG00000103353	MGI:5610825	pseudogene	predicted gene, 37597
3	pseudogene	44.72516	44.72574	positive	MGI_C57BL6J_5011051	Gm18866	NCBI_Gene:100417856	MGI:5011051	pseudogene	predicted gene, 18866
3	gene	44.98320	44.98330	positive	MGI_C57BL6J_5454774	Gm24997	ENSEMBL:ENSMUSG00000088535	MGI:5454774	snRNA gene	predicted gene, 24997
3	gene	45.16069	45.16080	positive	MGI_C57BL6J_5531371	Gm27989	ENSEMBL:ENSMUSG00000099285	MGI:5531371	miRNA gene	predicted gene, 27989
3	pseudogene	45.17179	45.17324	negative	MGI_C57BL6J_5434370	Gm21015	NCBI_Gene:100534291	MGI:5434370	pseudogene	predicted gene, 21015
3	gene	45.26999	45.27257	negative	MGI_C57BL6J_5611352	Gm38124	ENSEMBL:ENSMUSG00000103082	MGI:5611352	unclassified gene	predicted gene, 38124
3	gene	45.27342	45.27497	negative	MGI_C57BL6J_1924316	5930409G06Rik	ENSEMBL:ENSMUSG00000103477	MGI:1924316	unclassified gene	RIKEN cDNA 5930409G06 gene
3	gene	45.28044	45.37826	negative	MGI_C57BL6J_1919761	2610316D01Rik	NCBI_Gene:72511,ENSEMBL:ENSMUSG00000097040	MGI:1919761	lncRNA gene	RIKEN cDNA 2610316D01 gene
3	pseudogene	45.33216	45.33241	negative	MGI_C57BL6J_5610224	Gm36996	ENSEMBL:ENSMUSG00000103430	MGI:5610224	pseudogene	predicted gene, 36996
3	gene	45.37840	45.43562	positive	MGI_C57BL6J_1338042	Pcdh10	NCBI_Gene:18526,ENSEMBL:ENSMUSG00000049100	MGI:1338042	protein coding gene	protocadherin 10
3	gene	45.38548	45.38960	positive	MGI_C57BL6J_2442672	6330566A10Rik	NA	NA	unclassified gene	RIKEN cDNA 6330566A10 gene
3	gene	45.39986	45.40200	positive	MGI_C57BL6J_2444936	D930002L09Rik	NA	NA	unclassified gene	RIKEN cDNA D930002L09 gene
3	gene	45.41658	45.43931	negative	MGI_C57BL6J_1919524	1700027H10Rik	NCBI_Gene:72274,ENSEMBL:ENSMUSG00000100799	MGI:1919524	lncRNA gene	RIKEN cDNA 1700027H10 gene
3	gene	45.43838	45.44096	positive	MGI_C57BL6J_3780305	Gm2136	ENSEMBL:ENSMUSG00000103713	MGI:3780305	protein coding gene	predicted gene 2136
3	gene	45.44567	45.44881	positive	MGI_C57BL6J_5610573	Gm37345	ENSEMBL:ENSMUSG00000103947	MGI:5610573	unclassified gene	predicted gene, 37345
3	pseudogene	45.69054	45.69090	negative	MGI_C57BL6J_5611063	Gm37835	ENSEMBL:ENSMUSG00000103534	MGI:5611063	pseudogene	predicted gene, 37835
3	gene	45.77542	45.77589	negative	MGI_C57BL6J_5611394	Gm38166	ENSEMBL:ENSMUSG00000102190	MGI:5611394	unclassified gene	predicted gene, 38166
3	pseudogene	45.77587	45.86058	negative	MGI_C57BL6J_5591499	Gm32340	NCBI_Gene:102634856,ENSEMBL:ENSMUSG00000104491	MGI:5591499	pseudogene	predicted gene, 32340
3	gene	45.81774	45.81790	positive	MGI_C57BL6J_5455573	Gm25796	ENSEMBL:ENSMUSG00000064579	MGI:5455573	snRNA gene	predicted gene, 25796
3	pseudogene	45.86121	45.86995	negative	MGI_C57BL6J_5591575	Gm32416	NCBI_Gene:102634958	MGI:5591575	pseudogene	predicted gene, 32416
3	gene	45.97858	45.97870	positive	MGI_C57BL6J_5453114	Gm23337	ENSEMBL:ENSMUSG00000089584	MGI:5453114	snRNA gene	predicted gene, 23337
3	gene	46.28983	46.28996	positive	MGI_C57BL6J_5455858	Gm26081	ENSEMBL:ENSMUSG00000077256	MGI:5455858	snoRNA gene	predicted gene, 26081
3	pseudogene	46.41340	46.41412	positive	MGI_C57BL6J_5011028	Gm18843	NCBI_Gene:100417811,ENSEMBL:ENSMUSG00000104511	MGI:5011028	pseudogene	predicted gene, 18843
3	gene	46.44085	46.44822	negative	MGI_C57BL6J_3643087	Pabpc4l	NCBI_Gene:241989,ENSEMBL:ENSMUSG00000090919	MGI:3643087	protein coding gene	poly(A) binding protein, cytoplasmic 4-like
3	pseudogene	46.62112	46.62136	positive	MGI_C57BL6J_5610673	Gm37445	ENSEMBL:ENSMUSG00000102589	MGI:5610673	pseudogene	predicted gene, 37445
3	gene	46.90067	46.90078	negative	MGI_C57BL6J_5531112	Mir6379	miRBase:MI0021910,NCBI_Gene:102465199,ENSEMBL:ENSMUSG00000098417	MGI:5531112	miRNA gene	microRNA 6379
3	pseudogene	47.04911	47.05178	negative	MGI_C57BL6J_3641761	Gm10356	NCBI_Gene:545517,ENSEMBL:ENSMUSG00000072387	MGI:3641761	pseudogene	predicted gene 10356
3	pseudogene	47.08453	47.08575	negative	MGI_C57BL6J_3646161	Gm5274	NCBI_Gene:383849,ENSEMBL:ENSMUSG00000097985	MGI:3646161	pseudogene	predicted gene 5274
3	gene	47.20063	47.20076	positive	MGI_C57BL6J_5453668	Gm23891	ENSEMBL:ENSMUSG00000088739	MGI:5453668	snoRNA gene	predicted gene, 23891
3	pseudogene	47.23050	47.23100	negative	MGI_C57BL6J_3643228	Rpl23a-ps5	NCBI_Gene:383850,ENSEMBL:ENSMUSG00000102220	MGI:3643228	pseudogene	ribosomal protein L23A, pseudogene 5
3	gene	47.26308	47.26580	negative	MGI_C57BL6J_3809922	Gm10730	ENSEMBL:ENSMUSG00000103491	MGI:3809922	unclassified gene	predicted gene 10730
3	pseudogene	47.45961	47.46034	negative	MGI_C57BL6J_3780399	Gm2229	NCBI_Gene:100039426,ENSEMBL:ENSMUSG00000103798	MGI:3780399	pseudogene	predicted gene 2229
3	pseudogene	48.02601	48.02676	negative	MGI_C57BL6J_3648898	Gm7977	NCBI_Gene:666202,ENSEMBL:ENSMUSG00000103257	MGI:3648898	pseudogene	predicted gene 7977
3	gene	48.07834	48.07845	positive	MGI_C57BL6J_5610523	Gm37295	ENSEMBL:ENSMUSG00000104110	MGI:5610523	unclassified gene	predicted gene, 37295
3	gene	48.54642	48.57947	positive	MGI_C57BL6J_5826472	Gm46835	NCBI_Gene:108168915	MGI:5826472	lncRNA gene	predicted gene, 46835
3	gene	48.60573	48.60910	negative	MGI_C57BL6J_1913582	1700018B24Rik	NCBI_Gene:66332,ENSEMBL:ENSMUSG00000037910	MGI:1913582	lncRNA gene	RIKEN cDNA 1700018B24 gene
3	gene	48.74851	48.76095	negative	MGI_C57BL6J_5610418	Gm37190	ENSEMBL:ENSMUSG00000102181	MGI:5610418	lncRNA gene	predicted gene, 37190
3	gene	48.95472	48.95488	positive	MGI_C57BL6J_5453288	Gm23511	ENSEMBL:ENSMUSG00000065018	MGI:5453288	snRNA gene	predicted gene, 23511
3	gene	49.06237	49.09636	positive	MGI_C57BL6J_5590574	Gm31415	NCBI_Gene:102633632,ENSEMBL:ENSMUSG00000102263	MGI:5590574	lncRNA gene	predicted gene, 31415
3	gene	49.13746	49.13853	positive	MGI_C57BL6J_5611047	Gm37819	ENSEMBL:ENSMUSG00000104186	MGI:5611047	unclassified gene	predicted gene, 37819
3	pseudogene	49.20771	49.20807	negative	MGI_C57BL6J_5610912	Gm37684	ENSEMBL:ENSMUSG00000103027	MGI:5610912	pseudogene	predicted gene, 37684
3	gene	49.32568	49.36736	positive	MGI_C57BL6J_5295664	Gm20557	NCBI_Gene:329633,ENSEMBL:ENSMUSG00000102679	MGI:5295664	lncRNA gene	predicted gene, 20557
3	pseudogene	49.38115	49.38285	negative	MGI_C57BL6J_3643624	Gm5846	NCBI_Gene:545519,ENSEMBL:ENSMUSG00000104309	MGI:3643624	pseudogene	predicted gene 5846
3	pseudogene	49.40082	49.46744	negative	MGI_C57BL6J_3780091	Gm9683	NCBI_Gene:676568	MGI:3780091	pseudogene	predicted gene 9683
3	gene	49.49135	49.49148	positive	MGI_C57BL6J_5452257	Gm22480	ENSEMBL:ENSMUSG00000084517	MGI:5452257	snoRNA gene	predicted gene, 22480
3	pseudogene	49.53075	49.53131	positive	MGI_C57BL6J_5610652	Gm37424	ENSEMBL:ENSMUSG00000104437	MGI:5610652	pseudogene	predicted gene, 37424
3	pseudogene	49.60356	49.60388	positive	MGI_C57BL6J_5611489	Gm38261	ENSEMBL:ENSMUSG00000102731	MGI:5611489	pseudogene	predicted gene, 38261
3	pseudogene	49.60423	49.60447	positive	MGI_C57BL6J_5611316	Gm38088	ENSEMBL:ENSMUSG00000103249	MGI:5611316	pseudogene	predicted gene, 38088
3	pseudogene	49.63244	49.63297	negative	MGI_C57BL6J_3780498	Gm2328	NCBI_Gene:100039587,ENSEMBL:ENSMUSG00000104134	MGI:3780498	pseudogene	predicted gene 2328
3	pseudogene	49.64348	49.64413	positive	MGI_C57BL6J_5588900	Gm29741	NCBI_Gene:101055903,ENSEMBL:ENSMUSG00000103568	MGI:5588900	pseudogene	predicted gene, 29741
3	gene	49.65876	49.65887	positive	MGI_C57BL6J_5452873	Gm23096	ENSEMBL:ENSMUSG00000065381	MGI:5452873	snRNA gene	predicted gene, 23096
3	gene	49.74329	49.75738	negative	MGI_C57BL6J_1920423	Pcdh18	NCBI_Gene:73173,ENSEMBL:ENSMUSG00000037892	MGI:1920423	protein coding gene	protocadherin 18
3	pseudogene	49.78043	49.78089	negative	MGI_C57BL6J_5610778	Gm37550	ENSEMBL:ENSMUSG00000102943	MGI:5610778	pseudogene	predicted gene, 37550
3	gene	49.89253	50.49909	negative	MGI_C57BL6J_1347355	Slc7a11	NCBI_Gene:26570,ENSEMBL:ENSMUSG00000027737	MGI:1347355	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
3	gene	50.00197	50.01078	positive	MGI_C57BL6J_5611082	Gm37854	ENSEMBL:ENSMUSG00000102892	MGI:5611082	lncRNA gene	predicted gene, 37854
3	gene	50.01177	50.02624	negative	MGI_C57BL6J_5622927	Gm40042	NCBI_Gene:105244434	MGI:5622927	lncRNA gene	predicted gene, 40042
3	pseudogene	50.02967	50.02999	positive	MGI_C57BL6J_5611054	Gm37826	ENSEMBL:ENSMUSG00000104457	MGI:5611054	pseudogene	predicted gene, 37826
3	pseudogene	50.16666	50.16689	negative	MGI_C57BL6J_5610920	Gm37692	ENSEMBL:ENSMUSG00000104349	MGI:5610920	pseudogene	predicted gene, 37692
3	pseudogene	50.25485	50.25544	positive	MGI_C57BL6J_3780515	Gm2345	NCBI_Gene:100039628,ENSEMBL:ENSMUSG00000102167	MGI:3780515	pseudogene	predicted gene 2345
3	gene	50.40028	50.40428	negative	MGI_C57BL6J_5610726	Gm37498	ENSEMBL:ENSMUSG00000103907	MGI:5610726	unclassified gene	predicted gene, 37498
3	gene	50.51640	50.60731	negative	MGI_C57BL6J_3643374	Gm6209	NCBI_Gene:621304,ENSEMBL:ENSMUSG00000102715	MGI:3643374	lncRNA gene	predicted gene 6209
3	gene	50.57519	50.57652	negative	MGI_C57BL6J_1923259	5830415G21Rik	ENSEMBL:ENSMUSG00000102895	MGI:1923259	unclassified gene	RIKEN cDNA 5830415G21 gene
3	pseudogene	50.59799	50.59850	negative	MGI_C57BL6J_5611465	Gm38237	NCBI_Gene:108168851,ENSEMBL:ENSMUSG00000103745	MGI:5611465	pseudogene	predicted gene, 38237
3	gene	50.62435	50.62841	negative	MGI_C57BL6J_5610427	Gm37199	ENSEMBL:ENSMUSG00000104068	MGI:5610427	unclassified gene	predicted gene, 37199
3	gene	50.67970	50.68340	negative	MGI_C57BL6J_5610689	Gm37461	ENSEMBL:ENSMUSG00000104281	MGI:5610689	unclassified gene	predicted gene, 37461
3	gene	50.70690	50.71189	negative	MGI_C57BL6J_5622928	Gm40043	NCBI_Gene:105244435	MGI:5622928	lncRNA gene	predicted gene, 40043
3	gene	50.83858	50.83872	negative	MGI_C57BL6J_5454280	Gm24503	ENSEMBL:ENSMUSG00000089079	MGI:5454280	snoRNA gene	predicted gene, 24503
3	gene	50.88324	50.88889	negative	MGI_C57BL6J_5610776	Gm37548	NCBI_Gene:105244436,ENSEMBL:ENSMUSG00000103012	MGI:5610776	lncRNA gene	predicted gene, 37548
3	gene	50.91889	50.92153	negative	MGI_C57BL6J_5611071	Gm37843	ENSEMBL:ENSMUSG00000102614	MGI:5611071	unclassified gene	predicted gene, 37843
3	gene	50.96656	50.96677	positive	MGI_C57BL6J_2139603	AA672641	NA	NA	unclassified gene	expressed sequence AA672641
3	gene	50.97754	50.97881	negative	MGI_C57BL6J_5610437	Gm37209	ENSEMBL:ENSMUSG00000103652	MGI:5610437	unclassified gene	predicted gene, 37209
3	gene	51.03335	51.04284	negative	MGI_C57BL6J_5594915	Gm35756	NCBI_Gene:102639442	MGI:5594915	lncRNA gene	predicted gene, 35756
3	gene	51.05891	51.08934	negative	MGI_C57BL6J_5579936	Gm29230	NCBI_Gene:102639521,ENSEMBL:ENSMUSG00000102067	MGI:5579936	lncRNA gene	predicted gene 29230
3	gene	51.10366	51.10517	positive	MGI_C57BL6J_5611474	Gm38246	ENSEMBL:ENSMUSG00000103464	MGI:5611474	lncRNA gene	predicted gene, 38246
3	gene	51.12669	51.12894	negative	MGI_C57BL6J_5595050	Gm35891	NCBI_Gene:102639626	MGI:5595050	lncRNA gene	predicted gene, 35891
3	gene	51.21847	51.22033	negative	MGI_C57BL6J_5622929	Gm40044	NCBI_Gene:105244437	MGI:5622929	lncRNA gene	predicted gene, 40044
3	gene	51.22445	51.25165	positive	MGI_C57BL6J_109382	Noct	NCBI_Gene:12457,ENSEMBL:ENSMUSG00000023087	MGI:109382	protein coding gene	nocturnin
3	gene	51.23192	51.23438	positive	MGI_C57BL6J_5611585	Gm38357	ENSEMBL:ENSMUSG00000103313	MGI:5611585	unclassified gene	predicted gene, 38357
3	gene	51.25272	51.34092	negative	MGI_C57BL6J_1916507	Elf2	NCBI_Gene:69257,ENSEMBL:ENSMUSG00000037174	MGI:1916507	protein coding gene	E74-like factor 2
3	gene	51.27676	51.27841	positive	MGI_C57BL6J_1914996	4930577N17Rik	NCBI_Gene:67746,ENSEMBL:ENSMUSG00000087440	MGI:1914996	lncRNA gene	RIKEN cDNA 4930577N17 gene
3	gene	51.29718	51.29724	positive	MGI_C57BL6J_5454059	Gm24282	ENSEMBL:ENSMUSG00000077420	MGI:5454059	miRNA gene	predicted gene, 24282
3	gene	51.30249	51.30290	negative	MGI_C57BL6J_5610627	Gm37399	ENSEMBL:ENSMUSG00000104200	MGI:5610627	unclassified gene	predicted gene, 37399
3	gene	51.35835	51.35842	positive	MGI_C57BL6J_4414019	n-TPtgg7	NCBI_Gene:102467437	MGI:4414019	tRNA gene	nuclear encoded tRNA proline 7 (anticodon TGG)
3	gene	51.35941	51.35948	positive	MGI_C57BL6J_4414007	n-TPagg5	NCBI_Gene:102467366	MGI:4414007	tRNA gene	nuclear encoded tRNA proline 5 (anticodon AGG)
3	pseudogene	51.37022	51.37061	positive	MGI_C57BL6J_5610431	Gm37203	ENSEMBL:ENSMUSG00000103654	MGI:5610431	pseudogene	predicted gene, 37203
3	gene	51.37802	51.38632	positive	MGI_C57BL6J_3779459	Gm5103	NCBI_Gene:329636,ENSEMBL:ENSMUSG00000102544	MGI:3779459	lncRNA gene	predicted gene 5103
3	gene	51.38841	51.39674	negative	MGI_C57BL6J_1914999	Mgarp	NCBI_Gene:67749,ENSEMBL:ENSMUSG00000037161	MGI:1914999	protein coding gene	mitochondria localized glutamic acid rich protein
3	pseudogene	51.40246	51.40320	negative	MGI_C57BL6J_3779852	Gm9442	NCBI_Gene:669130,ENSEMBL:ENSMUSG00000104241	MGI:3779852	pseudogene	predicted gene 9442
3	gene	51.40468	51.40899	negative	MGI_C57BL6J_1913627	Ndufc1	NCBI_Gene:66377,ENSEMBL:ENSMUSG00000037152	MGI:1913627	protein coding gene	NADH:ubiquinone oxidoreductase subunit C1
3	gene	51.41515	51.47651	positive	MGI_C57BL6J_1922088	Naa15	NCBI_Gene:74838,ENSEMBL:ENSMUSG00000063273	MGI:1922088	protein coding gene	N(alpha)-acetyltransferase 15, NatA auxiliary subunit
3	gene	51.42361	51.42372	positive	MGI_C57BL6J_5610874	Gm37646	ENSEMBL:ENSMUSG00000103191	MGI:5610874	unclassified gene	predicted gene, 37646
3	gene	51.48233	51.48483	negative	MGI_C57BL6J_5611388	Gm38160	ENSEMBL:ENSMUSG00000102775	MGI:5611388	unclassified gene	predicted gene, 38160
3	gene	51.48392	51.49623	positive	MGI_C57BL6J_1330805	Rab33b	NCBI_Gene:19338,ENSEMBL:ENSMUSG00000027739	MGI:1330805	protein coding gene	RAB33B, member RAS oncogene family
3	gene	51.48962	51.49282	positive	MGI_C57BL6J_5611196	Gm37968	ENSEMBL:ENSMUSG00000102570	MGI:5611196	unclassified gene	predicted gene, 37968
3	gene	51.51099	51.51430	positive	MGI_C57BL6J_5595167	Gm36008	NCBI_Gene:102639777	MGI:5595167	lncRNA gene	predicted gene, 36008
3	gene	51.51532	51.56088	negative	MGI_C57BL6J_1920501	Setd7	NCBI_Gene:73251,ENSEMBL:ENSMUSG00000037111	MGI:1920501	protein coding gene	SET domain containing (lysine methyltransferase) 7
3	gene	51.55754	51.55965	negative	MGI_C57BL6J_5611428	Gm38200	ENSEMBL:ENSMUSG00000102466	MGI:5611428	unclassified gene	predicted gene, 38200
3	gene	51.55976	51.56712	positive	MGI_C57BL6J_1923230	5031434O11Rik	NCBI_Gene:100039684,ENSEMBL:ENSMUSG00000097885	MGI:1923230	lncRNA gene	RIKEN cDNA 5031434O11 gene
3	pseudogene	51.57111	51.57142	negative	MGI_C57BL6J_5611562	Gm38334	ENSEMBL:ENSMUSG00000104001	MGI:5611562	pseudogene	predicted gene, 38334
3	gene	51.58231	51.58285	positive	MGI_C57BL6J_1918620	5430433H01Rik	ENSEMBL:ENSMUSG00000104075	MGI:1918620	unclassified gene	RIKEN cDNA 5430433H01 gene
3	pseudogene	51.63649	51.63705	negative	MGI_C57BL6J_5611475	Gm38247	NCBI_Gene:108168852,ENSEMBL:ENSMUSG00000104166	MGI:5611475	pseudogene	predicted gene, 38247
3	gene	51.66036	51.68268	positive	MGI_C57BL6J_2448481	Mgst2	NCBI_Gene:211666,ENSEMBL:ENSMUSG00000074604	MGI:2448481	protein coding gene	microsomal glutathione S-transferase 2
3	gene	51.67280	51.67390	positive	MGI_C57BL6J_5610489	Gm37261	ENSEMBL:ENSMUSG00000103527	MGI:5610489	unclassified gene	predicted gene, 37261
3	gene	51.68591	52.10509	negative	MGI_C57BL6J_2389461	Maml3	NCBI_Gene:433586,ENSEMBL:ENSMUSG00000061143	MGI:2389461	protein coding gene	mastermind like transcriptional coactivator 3
3	gene	51.69372	51.69509	positive	MGI_C57BL6J_3642905	Gm10729	ENSEMBL:ENSMUSG00000074603	MGI:3642905	protein coding gene	predicted gene 10729
3	gene	51.70772	51.71225	positive	MGI_C57BL6J_5826440	Gm46803	NCBI_Gene:108168869	MGI:5826440	lncRNA gene	predicted gene, 46803
3	gene	51.75712	51.76209	negative	MGI_C57BL6J_5610570	Gm37342	ENSEMBL:ENSMUSG00000102732	MGI:5610570	unclassified gene	predicted gene, 37342
3	gene	51.81295	51.81931	positive	MGI_C57BL6J_5610457	Gm37229	ENSEMBL:ENSMUSG00000102539	MGI:5610457	lncRNA gene	predicted gene, 37229
3	gene	51.82891	51.82903	positive	MGI_C57BL6J_4422061	n-R5s196	ENSEMBL:ENSMUSG00000065070	MGI:4422061	rRNA gene	nuclear encoded rRNA 5S 196
3	gene	51.82939	51.83040	negative	MGI_C57BL6J_1920491	3110080O07Rik	ENSEMBL:ENSMUSG00000103284	MGI:1920491	unclassified gene	RIKEN cDNA 3110080O07 gene
3	gene	51.86735	51.86856	negative	MGI_C57BL6J_5611228	Gm38000	ENSEMBL:ENSMUSG00000103484	MGI:5611228	unclassified gene	predicted gene, 38000
3	gene	51.87299	51.87584	negative	MGI_C57BL6J_5610903	Gm37675	ENSEMBL:ENSMUSG00000102620	MGI:5610903	unclassified gene	predicted gene, 37675
3	gene	51.88428	51.88689	negative	MGI_C57BL6J_5611480	Gm38252	ENSEMBL:ENSMUSG00000102786	MGI:5611480	unclassified gene	predicted gene, 38252
3	pseudogene	51.90699	51.90882	negative	MGI_C57BL6J_3708672	Gm10728	ENSEMBL:ENSMUSG00000103701	MGI:3708672	pseudogene	predicted gene 10728
3	gene	51.98094	51.99007	positive	MGI_C57BL6J_5012274	Gm20089	ENSEMBL:ENSMUSG00000104161	MGI:5012274	lncRNA gene	predicted gene, 20089
3	gene	51.98763	51.98985	negative	MGI_C57BL6J_5611283	Gm38055	ENSEMBL:ENSMUSG00000102147	MGI:5611283	unclassified gene	predicted gene, 38055
3	gene	51.99134	51.99196	negative	MGI_C57BL6J_5610754	Gm37526	ENSEMBL:ENSMUSG00000103784	MGI:5610754	unclassified gene	predicted gene, 37526
3	gene	52.00074	52.00402	negative	MGI_C57BL6J_5610693	Gm37465	ENSEMBL:ENSMUSG00000102423	MGI:5610693	unclassified gene	predicted gene, 37465
3	gene	52.05729	52.06424	negative	MGI_C57BL6J_2444420	C130089K02Rik	ENSEMBL:ENSMUSG00000104339	MGI:2444420	unclassified gene	RIKEN cDNA C130089K02 gene
3	gene	52.07159	52.07339	negative	MGI_C57BL6J_1921741	5430420F09Rik	ENSEMBL:ENSMUSG00000102808	MGI:1921741	unclassified gene	RIKEN cDNA 5430420F09 gene
3	gene	52.13405	52.22200	negative	MGI_C57BL6J_5610430	Gm37202	ENSEMBL:ENSMUSG00000103655	MGI:5610430	lncRNA gene	predicted gene, 37202
3	gene	52.17108	52.18013	negative	MGI_C57BL6J_5589233	Gm30074	NCBI_Gene:102631843,ENSEMBL:ENSMUSG00000103726	MGI:5589233	lncRNA gene	predicted gene, 30074
3	gene	52.18657	52.18796	positive	MGI_C57BL6J_5611360	Gm38132	ENSEMBL:ENSMUSG00000104055	MGI:5611360	lncRNA gene	predicted gene, 38132
3	gene	52.19825	52.20049	positive	MGI_C57BL6J_5610398	Gm37170	ENSEMBL:ENSMUSG00000103170	MGI:5610398	lncRNA gene	predicted gene, 37170
3	pseudogene	52.23684	52.24694	negative	MGI_C57BL6J_3031232	Olfr1398-ps1	NCBI_Gene:404507,ENSEMBL:ENSMUSG00000102510	MGI:3031232	pseudogene	olfactory receptor 1398, pseudogene 1
3	gene	52.23745	52.25650	positive	MGI_C57BL6J_5589284	Gm30125	NCBI_Gene:102631910	MGI:5589284	lncRNA gene	predicted gene, 30125
3	gene	52.26834	52.35322	positive	MGI_C57BL6J_1890077	Foxo1	NCBI_Gene:56458,ENSEMBL:ENSMUSG00000044167	MGI:1890077	protein coding gene	forkhead box O1
3	gene	52.26843	52.26944	negative	MGI_C57BL6J_5141867	Gm20402	ENSEMBL:ENSMUSG00000092405	MGI:5141867	lncRNA gene	predicted gene 20402
3	gene	52.28224	52.28431	positive	MGI_C57BL6J_5611262	Gm38034	ENSEMBL:ENSMUSG00000102844	MGI:5611262	unclassified gene	predicted gene, 38034
3	pseudogene	52.42535	52.42573	positive	MGI_C57BL6J_5593462	Gm34303	NCBI_Gene:102637513	MGI:5593462	pseudogene	predicted gene, 34303
3	pseudogene	52.42541	52.42565	positive	MGI_C57BL6J_5611326	Gm38098	ENSEMBL:ENSMUSG00000103454	MGI:5611326	pseudogene	predicted gene, 38098
3	gene	52.46717	52.49327	positive	MGI_C57BL6J_5621422	Gm38537	NCBI_Gene:102641152	MGI:5621422	lncRNA gene	predicted gene, 38537
3	gene	52.50277	52.55022	positive	MGI_C57BL6J_5589332	Gm30173	NCBI_Gene:102631981,ENSEMBL:ENSMUSG00000103965	MGI:5589332	lncRNA gene	predicted gene, 30173
3	gene	52.58013	52.58907	positive	MGI_C57BL6J_5622932	Gm40047	NCBI_Gene:105244440	MGI:5622932	lncRNA gene	predicted gene, 40047
3	pseudogene	52.61282	52.61402	positive	MGI_C57BL6J_3704216	Gm10293	NCBI_Gene:100039762,ENSEMBL:ENSMUSG00000070490	MGI:3704216	pseudogene	predicted pseudogene 10293
3	gene	52.64989	52.70971	positive	MGI_C57BL6J_5589394	Gm30235	NCBI_Gene:102632062	MGI:5589394	lncRNA gene	predicted gene, 30235
3	gene	52.72265	52.72275	negative	MGI_C57BL6J_5452575	Gm22798	ENSEMBL:ENSMUSG00000065926	MGI:5452575	snRNA gene	predicted gene, 22798
3	gene	52.73972	52.77666	positive	MGI_C57BL6J_3780614	Gm2447	NCBI_Gene:329639,ENSEMBL:ENSMUSG00000102785	MGI:3780614	lncRNA gene	predicted gene 2447
3	gene	52.78900	52.79781	negative	MGI_C57BL6J_5589451	Gm30292	NCBI_Gene:102632139,ENSEMBL:ENSMUSG00000104109	MGI:5589451	lncRNA gene	predicted gene, 30292
3	gene	52.90676	52.92767	negative	MGI_C57BL6J_5434106	Gm20750	NCBI_Gene:622124,ENSEMBL:ENSMUSG00000104401	MGI:5434106	lncRNA gene	predicted gene, 20750
3	gene	52.93325	52.95628	positive	MGI_C57BL6J_5589510	Gm30351	NCBI_Gene:102632211	MGI:5589510	lncRNA gene	predicted gene, 30351
3	gene	52.95618	52.95789	negative	MGI_C57BL6J_5589561	Gm30402	NCBI_Gene:102632287	MGI:5589561	lncRNA gene	predicted gene, 30402
3	pseudogene	52.96005	52.96037	negative	MGI_C57BL6J_5610235	Gm37007	ENSEMBL:ENSMUSG00000103886	MGI:5610235	pseudogene	predicted gene, 37007
3	gene	52.98188	53.01724	negative	MGI_C57BL6J_1914792	Cog6	NCBI_Gene:67542,ENSEMBL:ENSMUSG00000027742	MGI:1914792	protein coding gene	component of oligomeric golgi complex 6
3	gene	53.03858	53.04176	negative	MGI_C57BL6J_5663038	Gm42901	ENSEMBL:ENSMUSG00000104850	MGI:5663038	lncRNA gene	predicted gene 42901
3	gene	53.04153	53.26168	positive	MGI_C57BL6J_1920048	Lhfp	NCBI_Gene:108927,ENSEMBL:ENSMUSG00000048332	MGI:1920048	protein coding gene	lipoma HMGIC fusion partner
3	gene	53.07216	53.07524	negative	MGI_C57BL6J_5663035	Gm42898	ENSEMBL:ENSMUSG00000104828	MGI:5663035	unclassified gene	predicted gene 42898
3	gene	53.08322	53.08588	positive	MGI_C57BL6J_5663036	Gm42899	ENSEMBL:ENSMUSG00000104687	MGI:5663036	unclassified gene	predicted gene 42899
3	gene	53.09900	53.10318	positive	MGI_C57BL6J_2443940	C130075A20Rik	ENSEMBL:ENSMUSG00000104735	MGI:2443940	unclassified gene	RIKEN cDNA C130075A20 gene
3	gene	53.10967	53.11012	positive	MGI_C57BL6J_5663941	Gm43804	ENSEMBL:ENSMUSG00000104615	MGI:5663941	unclassified gene	predicted gene 43804
3	gene	53.11040	53.11341	negative	MGI_C57BL6J_5663940	Gm43803	ENSEMBL:ENSMUSG00000104968	MGI:5663940	lncRNA gene	predicted gene 43803
3	gene	53.11217	53.11299	positive	MGI_C57BL6J_5663942	Gm43805	ENSEMBL:ENSMUSG00000105971	MGI:5663942	unclassified gene	predicted gene 43805
3	pseudogene	53.34649	53.34723	negative	MGI_C57BL6J_5663609	Gm43472	ENSEMBL:ENSMUSG00000106660	MGI:5663609	pseudogene	predicted gene 43472
3	gene	53.39575	53.39850	positive	MGI_C57BL6J_5622933	Gm40048	NCBI_Gene:105244441	MGI:5622933	lncRNA gene	predicted gene, 40048
3	pseudogene	53.40161	53.42457	negative	MGI_C57BL6J_5663608	Gm43471	NCBI_Gene:108168853,ENSEMBL:ENSMUSG00000105397	MGI:5663608	pseudogene	predicted gene 43471
3	gene	53.44858	53.46333	negative	MGI_C57BL6J_2444520	Nhlrc3	NCBI_Gene:212114,ENSEMBL:ENSMUSG00000042997	MGI:2444520	protein coding gene	NHL repeat containing 3
3	gene	53.45262	53.45805	positive	MGI_C57BL6J_3801870	Gm16206	NCBI_Gene:102632669,ENSEMBL:ENSMUSG00000085174	MGI:3801870	lncRNA gene	predicted gene 16206
3	gene	53.46367	53.48175	positive	MGI_C57BL6J_1919933	Proser1	NCBI_Gene:212127,ENSEMBL:ENSMUSG00000049504	MGI:1919933	protein coding gene	proline and serine rich 1
3	gene	53.48865	53.50850	positive	MGI_C57BL6J_2388072	Stoml3	NCBI_Gene:229277,ENSEMBL:ENSMUSG00000027744	MGI:2388072	protein coding gene	stomatin (Epb7.2)-like 3
3	gene	53.50893	53.51010	positive	MGI_C57BL6J_1924132	6430500D05Rik	ENSEMBL:ENSMUSG00000105481	MGI:1924132	unclassified gene	RIKEN cDNA 6430500D05 gene
3	gene	53.51200	53.51213	positive	MGI_C57BL6J_5453452	Gm23675	ENSEMBL:ENSMUSG00000087936	MGI:5453452	snoRNA gene	predicted gene, 23675
3	gene	53.51394	53.65736	negative	MGI_C57BL6J_2444465	Frem2	NCBI_Gene:242022,ENSEMBL:ENSMUSG00000037016	MGI:2444465	protein coding gene	Fras1 related extracellular matrix protein 2
3	pseudogene	53.66666	53.66739	negative	MGI_C57BL6J_3648425	Gm6073	NCBI_Gene:606547,ENSEMBL:ENSMUSG00000105840	MGI:3648425	pseudogene	predicted gene 6073
3	pseudogene	53.69237	53.69292	negative	MGI_C57BL6J_3649038	Gm6204	NCBI_Gene:621155,ENSEMBL:ENSMUSG00000105879	MGI:3649038	pseudogene	predicted gene 6204
3	gene	53.70304	53.73576	positive	MGI_C57BL6J_5589894	Gm30735	NCBI_Gene:102632743,ENSEMBL:ENSMUSG00000105168	MGI:5589894	lncRNA gene	predicted gene, 30735
3	gene	53.73622	53.73783	positive	MGI_C57BL6J_3642187	Gm10727	ENSEMBL:ENSMUSG00000105444	MGI:3642187	unclassified gene	predicted gene 10727
3	gene	53.75673	53.77295	positive	MGI_C57BL6J_2443105	C820005J03Rik	ENSEMBL:ENSMUSG00000106270	MGI:2443105	lncRNA gene	RIKEN cDNA C820005J03 gene
3	gene	53.84341	53.84351	positive	MGI_C57BL6J_5454628	Gm24851	ENSEMBL:ENSMUSG00000088653	MGI:5454628	snRNA gene	predicted gene, 24851
3	gene	53.84509	53.84528	positive	MGI_C57BL6J_3779200	Gm10985	ENSEMBL:ENSMUSG00000078742	MGI:3779200	protein coding gene	predicted gene 10985
3	gene	53.85338	53.86383	negative	MGI_C57BL6J_1915140	Ufm1	NCBI_Gene:67890,ENSEMBL:ENSMUSG00000027746	MGI:1915140	protein coding gene	ubiquitin-fold modifier 1
3	gene	53.92484	53.94353	positive	MGI_C57BL6J_5590185	Gm31026	NCBI_Gene:102633119,ENSEMBL:ENSMUSG00000106577	MGI:5590185	lncRNA gene	predicted gene, 31026
3	pseudogene	54.02115	54.02195	positive	MGI_C57BL6J_3645533	Gm8109	NCBI_Gene:666444,ENSEMBL:ENSMUSG00000103155	MGI:3645533	pseudogene	predicted gene 8109
3	pseudogene	54.02988	54.03041	positive	MGI_C57BL6J_5010203	Gm18018	NCBI_Gene:100416282,ENSEMBL:ENSMUSG00000105067	MGI:5010203	pseudogene	predicted gene, 18018
3	gene	54.15604	54.31847	positive	MGI_C57BL6J_109525	Trpc4	NCBI_Gene:22066,ENSEMBL:ENSMUSG00000027748	MGI:109525	protein coding gene	transient receptor potential cation channel, subfamily C, member 4
3	gene	54.35927	54.39104	positive	MGI_C57BL6J_1926321	Postn	NCBI_Gene:50706,ENSEMBL:ENSMUSG00000027750	MGI:1926321	protein coding gene	periostin, osteoblast specific factor
3	gene	54.35966	54.36101	negative	MGI_C57BL6J_5590254	Gm31095	NCBI_Gene:102633208	MGI:5590254	lncRNA gene	predicted gene, 31095
3	pseudogene	54.48141	54.48293	positive	MGI_C57BL6J_3645731	Gm5641	NCBI_Gene:434807,ENSEMBL:ENSMUSG00000069014	MGI:3645731	pseudogene	predicted gene 5641
3	gene	54.48856	54.53489	negative	MGI_C57BL6J_5590313	Gm31154	NCBI_Gene:102633293	MGI:5590313	lncRNA gene	predicted gene, 31154
3	gene	54.59055	54.60139	negative	MGI_C57BL6J_5622935	Gm40050	NCBI_Gene:105244443	MGI:5622935	lncRNA gene	predicted gene, 40050
3	gene	54.63144	54.63463	positive	MGI_C57BL6J_5477172	Gm26678	ENSEMBL:ENSMUSG00000097599	MGI:5477172	lncRNA gene	predicted gene, 26678
3	pseudogene	54.63288	54.63457	negative	MGI_C57BL6J_3588285	B020017C02Rik	NCBI_Gene:100503708,ENSEMBL:ENSMUSG00000104831	MGI:3588285	pseudogene	RIKEN cDNA B020017C02 gene
3	gene	54.69276	54.72877	positive	MGI_C57BL6J_1929651	Supt20	NCBI_Gene:56790,ENSEMBL:ENSMUSG00000027751	MGI:1929651	protein coding gene	SPT20 SAGA complex component
3	gene	54.71318	54.71435	negative	MGI_C57BL6J_5439427	Gm21958	ENSEMBL:ENSMUSG00000094487	MGI:5439427	protein coding gene	predicted gene, 21958
3	gene	54.72868	54.73539	negative	MGI_C57BL6J_1916889	Exosc8	NCBI_Gene:69639,ENSEMBL:ENSMUSG00000027752	MGI:1916889	protein coding gene	exosome component 8
3	gene	54.73554	54.75132	positive	MGI_C57BL6J_1913498	Alg5	NCBI_Gene:66248,ENSEMBL:ENSMUSG00000036632	MGI:1913498	protein coding gene	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
3	gene	54.75545	54.80166	positive	MGI_C57BL6J_1859993	Smad9	NCBI_Gene:55994,ENSEMBL:ENSMUSG00000027796	MGI:1859993	protein coding gene	SMAD family member 9
3	gene	54.80311	54.80779	negative	MGI_C57BL6J_2180854	Rfxap	NCBI_Gene:170767,ENSEMBL:ENSMUSG00000036615	MGI:2180854	protein coding gene	regulatory factor X-associated protein
3	pseudogene	54.80997	54.81140	negative	MGI_C57BL6J_3708673	Gm10254	NCBI_Gene:545524,ENSEMBL:ENSMUSG00000069011	MGI:3708673	pseudogene	predicted gene 10254
3	gene	54.89707	54.91589	negative	MGI_C57BL6J_3607715	Sertm1	NCBI_Gene:329641,ENSEMBL:ENSMUSG00000056306	MGI:3607715	protein coding gene	serine rich and transmembrane domain containing 1
3	gene	54.91602	54.95326	positive	MGI_C57BL6J_5590517	Gm31358	NCBI_Gene:102633562	MGI:5590517	lncRNA gene	predicted gene, 31358
3	gene	55.04547	55.05550	negative	MGI_C57BL6J_108042	Ccna1	NCBI_Gene:12427,ENSEMBL:ENSMUSG00000027793	MGI:108042	protein coding gene	cyclin A1
3	gene	55.05524	55.08400	positive	MGI_C57BL6J_1918220	4931419H13Rik	NCBI_Gene:70970,ENSEMBL:ENSMUSG00000106589	MGI:1918220	lncRNA gene	RIKEN cDNA 4931419H13 gene
3	pseudogene	55.05735	55.05766	negative	MGI_C57BL6J_5663692	Gm43555	ENSEMBL:ENSMUSG00000105977	MGI:5663692	pseudogene	predicted gene 43555
3	gene	55.11207	55.13733	positive	MGI_C57BL6J_2139806	Spg20	NCBI_Gene:229285,ENSEMBL:ENSMUSG00000036580	MGI:2139806	protein coding gene	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
3	gene	55.13734	55.17525	positive	MGI_C57BL6J_2444356	Ccdc169	NCBI_Gene:320604,ENSEMBL:ENSMUSG00000048655	MGI:2444356	protein coding gene	coiled-coil domain containing 169
3	gene	55.16231	55.16243	negative	MGI_C57BL6J_5451806	Gm22029	ENSEMBL:ENSMUSG00000080590	MGI:5451806	miRNA gene	predicted gene, 22029
3	gene	55.18203	55.20996	positive	MGI_C57BL6J_1921684	Sohlh2	NCBI_Gene:74434,ENSEMBL:ENSMUSG00000027794	MGI:1921684	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 2
3	gene	55.24236	55.53907	positive	MGI_C57BL6J_1330861	Dclk1	NCBI_Gene:13175,ENSEMBL:ENSMUSG00000027797	MGI:1330861	protein coding gene	doublecortin-like kinase 1
3	gene	55.29094	55.29194	positive	MGI_C57BL6J_1924494	9430012M22Rik	NA	NA	unclassified gene	RIKEN cDNA 9430012M22 gene
3	gene	55.30532	55.30542	positive	MGI_C57BL6J_5454909	Gm25132	ENSEMBL:ENSMUSG00000064586	MGI:5454909	snRNA gene	predicted gene, 25132
3	gene	55.33084	55.33297	positive	MGI_C57BL6J_5012002	Gm19817	ENSEMBL:ENSMUSG00000105302	MGI:5012002	unclassified gene	predicted gene, 19817
3	gene	55.35240	55.38079	negative	MGI_C57BL6J_5622936	Gm40051	NCBI_Gene:105244444	MGI:5622936	lncRNA gene	predicted gene, 40051
3	gene	55.37746	55.40312	negative	MGI_C57BL6J_5662746	Gm42609	ENSEMBL:ENSMUSG00000105975	MGI:5662746	lncRNA gene	predicted gene 42609
3	gene	55.39181	55.40420	negative	MGI_C57BL6J_3642047	Gm9831	NCBI_Gene:101056032	MGI:3642047	protein coding gene	predicted gene 9831
3	gene	55.46198	55.47221	negative	MGI_C57BL6J_5439423	Gm21954	ENSEMBL:ENSMUSG00000094962	MGI:5439423	protein coding gene	predicted gene, 21954
3	gene	55.47609	55.48162	negative	MGI_C57BL6J_5590602	Gm31443	NCBI_Gene:102633676	MGI:5590602	lncRNA gene	predicted gene, 31443
3	gene	55.48379	55.48718	positive	MGI_C57BL6J_5662744	Gm42607	ENSEMBL:ENSMUSG00000106354	MGI:5662744	unclassified gene	predicted gene 42607
3	gene	55.51757	55.51959	positive	MGI_C57BL6J_5662745	Gm42608	ENSEMBL:ENSMUSG00000106651	MGI:5662745	unclassified gene	predicted gene 42608
3	gene	55.54045	55.54338	negative	MGI_C57BL6J_5590955	Gm31796	NCBI_Gene:102634140	MGI:5590955	lncRNA gene	predicted gene, 31796
3	gene	55.54354	55.54855	positive	MGI_C57BL6J_5455181	Gm25404	NCBI_Gene:102634218,ENSEMBL:ENSMUSG00000064904	MGI:5455181	snRNA gene	predicted gene, 25404
3	gene	55.57492	55.57727	positive	MGI_C57BL6J_5663685	Gm43548	ENSEMBL:ENSMUSG00000105627	MGI:5663685	unclassified gene	predicted gene 43548
3	gene	55.57811	55.58273	negative	MGI_C57BL6J_5663686	Gm43549	NCBI_Gene:108168870,ENSEMBL:ENSMUSG00000106334	MGI:5663686	lncRNA gene	predicted gene 43549
3	gene	55.62519	56.18427	negative	MGI_C57BL6J_1347075	Nbea	NCBI_Gene:26422,ENSEMBL:ENSMUSG00000027799	MGI:1347075	protein coding gene	neurobeachin
3	gene	55.70589	55.71565	positive	MGI_C57BL6J_5826441	Gm46804	NCBI_Gene:108168871	MGI:5826441	lncRNA gene	predicted gene, 46804
3	gene	55.72593	55.72844	negative	MGI_C57BL6J_3609650	D430004P15Rik	NA	NA	unclassified gene	Riken cDNA D430004P15 gene
3	gene	55.77534	55.78795	negative	MGI_C57BL6J_3698047	9630024C22Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9630024C22 gene
3	gene	55.78251	55.78529	positive	MGI_C57BL6J_1333773	Mab21l1	NCBI_Gene:17116,ENSEMBL:ENSMUSG00000056947	MGI:1333773	protein coding gene	mab-21-like 1
3	gene	55.83367	55.83446	negative	MGI_C57BL6J_1924979	6720451E02Rik	NA	NA	unclassified gene	RIKEN cDNA 6720451E02 gene
3	pseudogene	55.84710	55.84840	positive	MGI_C57BL6J_1918432	4933417G07Rik	NCBI_Gene:71182,ENSEMBL:ENSMUSG00000106572	MGI:1918432	pseudogene	RIKEN cDNA 4933417G07 gene
3	gene	55.85525	55.85615	negative	MGI_C57BL6J_1926125	B230206L23Rik	NA	NA	unclassified gene	RIKEN cDNA B230206L23 gene
3	gene	55.88327	56.00032	positive	MGI_C57BL6J_5591073	Gm31914	NCBI_Gene:102634293	MGI:5591073	lncRNA gene	predicted gene, 31914
3	gene	55.89031	55.93670	positive	MGI_C57BL6J_5663513	Gm43376	ENSEMBL:ENSMUSG00000104677	MGI:5663513	lncRNA gene	predicted gene 43376
3	gene	55.95678	55.95691	negative	MGI_C57BL6J_5452561	Gm22784	ENSEMBL:ENSMUSG00000077276	MGI:5452561	snoRNA gene	predicted gene, 22784
3	gene	56.01492	56.01717	negative	MGI_C57BL6J_5662977	Gm42840	ENSEMBL:ENSMUSG00000104938	MGI:5662977	unclassified gene	predicted gene 42840
3	gene	56.12316	56.12616	negative	MGI_C57BL6J_5662979	Gm42842	ENSEMBL:ENSMUSG00000106211	MGI:5662979	unclassified gene	predicted gene 42842
3	gene	56.12860	56.13053	negative	MGI_C57BL6J_5662978	Gm42841	ENSEMBL:ENSMUSG00000106528	MGI:5662978	unclassified gene	predicted gene 42841
3	gene	56.16395	56.16757	negative	MGI_C57BL6J_5662980	Gm42843	ENSEMBL:ENSMUSG00000105293	MGI:5662980	unclassified gene	predicted gene 42843
3	gene	56.21791	56.22124	negative	MGI_C57BL6J_5622937	Gm40052	NCBI_Gene:105244445	MGI:5622937	lncRNA gene	predicted gene, 40052
3	gene	56.25590	56.26994	negative	MGI_C57BL6J_5622938	Gm40053	NCBI_Gene:105244446	MGI:5622938	lncRNA gene	predicted gene, 40053
3	gene	56.34703	56.35755	negative	MGI_C57BL6J_5622939	Gm40054	NCBI_Gene:105244447	MGI:5622939	lncRNA gene	predicted gene, 40054
3	gene	56.35224	56.35230	positive	MGI_C57BL6J_102792	Mcptl	NA	NA	protein coding gene	mast cell protease-like
3	gene	56.43600	56.43875	negative	MGI_C57BL6J_5591336	Gm32177	NCBI_Gene:102634641	MGI:5591336	lncRNA gene	predicted gene, 32177
3	gene	56.44528	56.44541	negative	MGI_C57BL6J_5455504	Gm25727	ENSEMBL:ENSMUSG00000077710	MGI:5455504	snoRNA gene	predicted gene, 25727
3	gene	56.69842	56.70506	positive	MGI_C57BL6J_5591396	Gm32237	NCBI_Gene:102634719	MGI:5591396	lncRNA gene	predicted gene, 32237
3	pseudogene	56.82832	56.82884	negative	MGI_C57BL6J_3780790	Gm2622	NCBI_Gene:100040139,ENSEMBL:ENSMUSG00000105113	MGI:3780790	pseudogene	predicted gene 2622
3	gene	56.88806	56.89133	negative	MGI_C57BL6J_3588185	F830104G03Rik	NA	NA	unclassified gene	RIKEN cDNA F830104G03 gene
3	gene	57.05415	57.05428	positive	MGI_C57BL6J_5452046	Gm22269	ENSEMBL:ENSMUSG00000077190	MGI:5452046	snoRNA gene	predicted gene, 22269
3	pseudogene	57.13549	57.13683	negative	MGI_C57BL6J_3805962	Gm8177	NCBI_Gene:666585,ENSEMBL:ENSMUSG00000097366	MGI:3805962	pseudogene	predicted gene 8177
3	gene	57.22772	57.22918	negative	MGI_C57BL6J_1918389	4933408K01Rik	NA	NA	unclassified gene	RIKEN cDNA 4933408K01 gene
3	pseudogene	57.24925	57.24950	positive	MGI_C57BL6J_5663561	Gm43424	ENSEMBL:ENSMUSG00000106286	MGI:5663561	pseudogene	predicted gene 43424
3	pseudogene	57.27174	57.27237	negative	MGI_C57BL6J_5010845	Gm18660	NCBI_Gene:100417512,ENSEMBL:ENSMUSG00000104534	MGI:5010845	pseudogene	predicted gene, 18660
3	gene	57.28561	57.30199	negative	MGI_C57BL6J_104678	Tm4sf1	NCBI_Gene:17112,ENSEMBL:ENSMUSG00000027800	MGI:104678	protein coding gene	transmembrane 4 superfamily member 1
3	pseudogene	57.36225	57.36361	positive	MGI_C57BL6J_3646382	Gm5276	NCBI_Gene:383862,ENSEMBL:ENSMUSG00000105452	MGI:3646382	pseudogene	predicted gene 5276
3	gene	57.37929	57.39455	negative	MGI_C57BL6J_5591526	Gm32367	NCBI_Gene:102634892	MGI:5591526	lncRNA gene	predicted gene, 32367
3	gene	57.42531	57.44168	positive	MGI_C57BL6J_2385173	Tm4sf4	NCBI_Gene:229302,ENSEMBL:ENSMUSG00000027801	MGI:2385173	protein coding gene	transmembrane 4 superfamily member 4
3	gene	57.45564	57.57591	negative	MGI_C57BL6J_1917649	Wwtr1	NCBI_Gene:97064,ENSEMBL:ENSMUSG00000027803	MGI:1917649	protein coding gene	WW domain containing transcription regulator 1
3	pseudogene	57.52655	57.53048	positive	MGI_C57BL6J_3802068	Gm16016	NCBI_Gene:105244448,ENSEMBL:ENSMUSG00000083538	MGI:3802068	pseudogene	predicted gene 16016
3	gene	57.61259	57.62736	negative	MGI_C57BL6J_5477165	Gm26671	NCBI_Gene:102635136,ENSEMBL:ENSMUSG00000097339	MGI:5477165	lncRNA gene	predicted gene, 26671
3	gene	57.61661	57.61672	positive	MGI_C57BL6J_5530798	Mir6377	miRBase:MI0021907,NCBI_Gene:102465197,ENSEMBL:ENSMUSG00000098401	MGI:5530798	miRNA gene	microRNA 6377
3	gene	57.63688	57.64084	negative	MGI_C57BL6J_5663574	Gm43437	ENSEMBL:ENSMUSG00000104965	MGI:5663574	unclassified gene	predicted gene 43437
3	gene	57.63768	57.64073	positive	MGI_C57BL6J_5826442	Gm46805	NCBI_Gene:108168872	MGI:5826442	lncRNA gene	predicted gene, 46805
3	gene	57.64435	57.65172	negative	MGI_C57BL6J_1098806	Commd2	NCBI_Gene:52245,ENSEMBL:ENSMUSG00000036513	MGI:1098806	protein coding gene	COMM domain containing 2
3	gene	57.65440	57.65558	negative	MGI_C57BL6J_2140033	BB187690	ENSEMBL:ENSMUSG00000105389	MGI:2140033	unclassified gene	expressed sequence BB187690
3	gene	57.65739	57.69280	negative	MGI_C57BL6J_2685256	Ankub1	NCBI_Gene:242037,ENSEMBL:ENSMUSG00000074591	MGI:2685256	protein coding gene	ankrin repeat and ubiquitin domain containing 1
3	gene	57.69618	57.69748	negative	MGI_C57BL6J_5663235	Gm43098	ENSEMBL:ENSMUSG00000106635	MGI:5663235	unclassified gene	predicted gene 43098
3	pseudogene	57.71777	57.71832	negative	MGI_C57BL6J_3648319	Gm6394	NCBI_Gene:623114,ENSEMBL:ENSMUSG00000104623	MGI:3648319	pseudogene	predicted gene 6394
3	gene	57.73604	57.83543	positive	MGI_C57BL6J_1346341	Rnf13	NCBI_Gene:24017,ENSEMBL:ENSMUSG00000036503	MGI:1346341	protein coding gene	ring finger protein 13
3	pseudogene	57.76582	57.76667	negative	MGI_C57BL6J_3780052	Gm9645	NCBI_Gene:675537,ENSEMBL:ENSMUSG00000106421	MGI:3780052	pseudogene	predicted gene 9645
3	pseudogene	57.80976	57.81027	negative	MGI_C57BL6J_5010136	Gm17951	NCBI_Gene:100416165,ENSEMBL:ENSMUSG00000106006	MGI:5010136	pseudogene	predicted gene, 17951
3	gene	57.82159	57.82240	positive	MGI_C57BL6J_1925970	D530035G10Rik	NA	NA	unclassified gene	RIKEN cDNA D530035G10 gene
3	gene	57.84190	57.84808	negative	MGI_C57BL6J_97550	Pfn2	NCBI_Gene:18645,ENSEMBL:ENSMUSG00000027805	MGI:97550	protein coding gene	profilin 2
3	gene	57.92209	57.92219	negative	MGI_C57BL6J_5454308	Gm24531	ENSEMBL:ENSMUSG00000088570	MGI:5454308	snRNA gene	predicted gene, 24531
3	pseudogene	57.94292	57.94315	positive	MGI_C57BL6J_5662648	Gm42511	ENSEMBL:ENSMUSG00000104730	MGI:5662648	pseudogene	predicted gene 42511
3	gene	57.94911	57.97883	positive	MGI_C57BL6J_5591912	Gm32753	NCBI_Gene:102635402	MGI:5591912	lncRNA gene	predicted gene, 32753
3	gene	57.95198	58.03171	negative	MGI_C57BL6J_5622940	Gm40055	NCBI_Gene:105244449,ENSEMBL:ENSMUSG00000105003	MGI:5622940	lncRNA gene	predicted gene, 40055
3	pseudogene	57.96219	57.96337	positive	MGI_C57BL6J_5011052	Gm18867	NCBI_Gene:100417858,ENSEMBL:ENSMUSG00000106246	MGI:5011052	pseudogene	predicted gene, 18867
3	gene	58.07972	58.08183	positive	MGI_C57BL6J_5662650	Gm42513	ENSEMBL:ENSMUSG00000105065	MGI:5662650	unclassified gene	predicted gene 42513
3	gene	58.08960	58.16235	positive	MGI_C57BL6J_5622941	Gm40056	NCBI_Gene:105244450	MGI:5622941	lncRNA gene	predicted gene, 40056
3	pseudogene	58.10256	58.10430	negative	MGI_C57BL6J_3643179	Gm5537	NCBI_Gene:433594,ENSEMBL:ENSMUSG00000069008	MGI:3643179	pseudogene	predicted gene 5537
3	gene	58.11705	58.16762	positive	MGI_C57BL6J_1925506	4921539H07Rik	ENSEMBL:ENSMUSG00000104586	MGI:1925506	lncRNA gene	RIKEN cDNA 4921539H07 gene
3	gene	58.14171	58.16381	negative	MGI_C57BL6J_1915100	1700007F19Rik	NCBI_Gene:67850,ENSEMBL:ENSMUSG00000100666	MGI:1915100	lncRNA gene	RIKEN cDNA 1700007F19 gene
3	gene	58.21192	58.21337	positive	MGI_C57BL6J_5622942	Gm40057	NCBI_Gene:105244451	MGI:5622942	lncRNA gene	predicted gene, 40057
3	gene	58.29025	58.29036	negative	MGI_C57BL6J_5455943	Gm26166	ENSEMBL:ENSMUSG00000065722	MGI:5455943	snRNA gene	predicted gene, 26166
3	gene	58.30186	58.31762	positive	MGI_C57BL6J_5592006	Gm32847	NCBI_Gene:102635539	MGI:5592006	lncRNA gene	predicted gene, 32847
3	pseudogene	58.31494	58.31531	negative	MGI_C57BL6J_5663867	Gm43730	ENSEMBL:ENSMUSG00000106176	MGI:5663867	pseudogene	predicted gene 43730
3	pseudogene	58.40465	58.40512	positive	MGI_C57BL6J_5012313	Gm20128	NCBI_Gene:100504238,ENSEMBL:ENSMUSG00000105154	MGI:5012313	pseudogene	predicted gene, 20128
3	gene	58.41472	58.46679	positive	MGI_C57BL6J_1919283	Tsc22d2	NCBI_Gene:72033,ENSEMBL:ENSMUSG00000027806	MGI:1919283	protein coding gene	TSC22 domain family, member 2
3	gene	58.43268	58.43301	positive	MGI_C57BL6J_1338064	Gdap9	NA	NA	unclassified gene	ganglioside-induced differentiation-associated-protein 9
3	gene	58.51982	58.52589	negative	MGI_C57BL6J_92638	Serp1	NCBI_Gene:28146,ENSEMBL:ENSMUSG00000027808	MGI:92638	protein coding gene	stress-associated endoplasmic reticulum protein 1
3	gene	58.52582	58.55750	positive	MGI_C57BL6J_1098684	Eif2a	NCBI_Gene:229317,ENSEMBL:ENSMUSG00000027810	MGI:1098684	protein coding gene	eukaryotic translation initiation factor 2A
3	gene	58.52693	58.52812	positive	MGI_C57BL6J_1925148	6720482G16Rik	ENSEMBL:ENSMUSG00000106553	MGI:1925148	unclassified gene	RIKEN cDNA 6720482G16 gene
3	gene	58.57664	58.59354	positive	MGI_C57BL6J_1916477	Selenot	NCBI_Gene:69227,ENSEMBL:ENSMUSG00000075700	MGI:1916477	protein coding gene	selenoprotein T
3	gene	58.61630	58.63721	negative	MGI_C57BL6J_3588212	Erich6	NCBI_Gene:545527,ENSEMBL:ENSMUSG00000070471	MGI:3588212	protein coding gene	glutamate rich 6
3	gene	58.63671	58.63749	positive	MGI_C57BL6J_5826443	Gm46806	NCBI_Gene:108168873	MGI:5826443	lncRNA gene	predicted gene, 46806
3	pseudogene	58.65204	58.65404	positive	MGI_C57BL6J_3779790	Gm8234	NCBI_Gene:666680,ENSEMBL:ENSMUSG00000105021	MGI:3779790	pseudogene	predicted gene 8234
3	pseudogene	58.66547	58.66664	negative	MGI_C57BL6J_2139888	AU022133	NCBI_Gene:100417266,ENSEMBL:ENSMUSG00000105336	MGI:2139888	pseudogene	expressed sequence AU022133
3	gene	58.67494	58.69244	negative	MGI_C57BL6J_108062	Siah2	NCBI_Gene:20439,ENSEMBL:ENSMUSG00000036432	MGI:108062	protein coding gene	siah E3 ubiquitin protein ligase 2
3	gene	58.69259	58.79733	positive	MGI_C57BL6J_1923132	4930593A02Rik	NCBI_Gene:71301,ENSEMBL:ENSMUSG00000097725	MGI:1923132	lncRNA gene	RIKEN cDNA 4930593A02 gene
3	gene	58.69756	58.69867	positive	MGI_C57BL6J_1925070	A930028O11Rik	ENSEMBL:ENSMUSG00000105226	MGI:1925070	unclassified gene	RIKEN cDNA A930028O11 gene
3	pseudogene	58.76149	58.76275	negative	MGI_C57BL6J_5592251	Gm33092	NCBI_Gene:102635856	MGI:5592251	pseudogene	predicted gene, 33092
3	pseudogene	58.78841	58.82231	negative	MGI_C57BL6J_2140018	Mindy4b-ps	NCBI_Gene:100040293,ENSEMBL:ENSMUSG00000101860	MGI:2140018	pseudogene	MINDY lysine 48 deubiquitinase 4B, pseudogene
3	gene	58.82499	58.83590	positive	MGI_C57BL6J_5622944	Gm40059	NCBI_Gene:105244453	MGI:5622944	lncRNA gene	predicted gene, 40059
3	gene	58.84210	58.86675	positive	MGI_C57BL6J_5622945	Gm40060	NCBI_Gene:105244454	MGI:5622945	lncRNA gene	predicted gene, 40060
3	gene	58.84403	58.88534	negative	MGI_C57BL6J_2388124	Clrn1	NCBI_Gene:229320,ENSEMBL:ENSMUSG00000043850	MGI:2388124	protein coding gene	clarin 1
3	gene	58.97563	58.97573	positive	MGI_C57BL6J_5452268	Gm22491	ENSEMBL:ENSMUSG00000087815	MGI:5452268	snRNA gene	predicted gene, 22491
3	gene	58.97886	58.97903	negative	MGI_C57BL6J_5455349	Gm25572	ENSEMBL:ENSMUSG00000088152	MGI:5455349	snRNA gene	predicted gene, 25572
3	pseudogene	58.98713	58.98786	positive	MGI_C57BL6J_3642685	Rpl13-ps6	NCBI_Gene:100040416,ENSEMBL:ENSMUSG00000059776	MGI:3642685	pseudogene	ribosomal protein L13, pseudogene 6
3	gene	59.00162	59.00169	positive	MGI_C57BL6J_5531175	Gm27793	ENSEMBL:ENSMUSG00000099052	MGI:5531175	unclassified non-coding RNA gene	predicted gene, 27793
3	gene	59.00247	59.00616	negative	MGI_C57BL6J_5663707	Gm43570	ENSEMBL:ENSMUSG00000105945	MGI:5663707	lncRNA gene	predicted gene 43570
3	gene	59.00559	59.31868	positive	MGI_C57BL6J_2139916	Med12l	NCBI_Gene:329650,ENSEMBL:ENSMUSG00000056476	MGI:2139916	protein coding gene	mediator complex subunit 12-like
3	gene	59.09645	59.10182	negative	MGI_C57BL6J_2442043	Gpr171	NCBI_Gene:229323,ENSEMBL:ENSMUSG00000050075	MGI:2442043	protein coding gene	G protein-coupled receptor 171
3	gene	59.11386	59.15362	negative	MGI_C57BL6J_2155705	P2ry14	NCBI_Gene:140795,ENSEMBL:ENSMUSG00000036381	MGI:2155705	protein coding gene	purinergic receptor P2Y, G-protein coupled, 14
3	gene	59.14630	59.15363	negative	MGI_C57BL6J_2444074	F630111L10Rik	NCBI_Gene:320463	MGI:2444074	lncRNA gene	RIKEN cDNA F630111L10 gene
3	gene	59.17890	59.19547	negative	MGI_C57BL6J_1934133	Gpr87	NCBI_Gene:84111,ENSEMBL:ENSMUSG00000051431	MGI:1934133	protein coding gene	G protein-coupled receptor 87
3	gene	59.20789	59.21088	negative	MGI_C57BL6J_1921441	P2ry13	NCBI_Gene:74191,ENSEMBL:ENSMUSG00000036362	MGI:1921441	protein coding gene	purinergic receptor P2Y, G-protein coupled 13
3	gene	59.21627	59.26301	negative	MGI_C57BL6J_1918089	P2ry12	NCBI_Gene:70839,ENSEMBL:ENSMUSG00000036353	MGI:1918089	protein coding gene	purinergic receptor P2Y, G-protein coupled 12
3	gene	59.26979	59.27131	positive	MGI_C57BL6J_5663726	Gm43589	ENSEMBL:ENSMUSG00000104550	MGI:5663726	unclassified gene	predicted gene 43589
3	gene	59.31674	59.34444	negative	MGI_C57BL6J_1923481	Igsf10	NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334	MGI:1923481	protein coding gene	immunoglobulin superfamily, member 10
3	gene	59.34427	59.35117	positive	MGI_C57BL6J_5611414	Gm38186	ENSEMBL:ENSMUSG00000103668	MGI:5611414	lncRNA gene	predicted gene, 38186
3	pseudogene	59.42453	59.42476	positive	MGI_C57BL6J_5610943	Gm37715	ENSEMBL:ENSMUSG00000102247	MGI:5610943	pseudogene	predicted gene, 37715
3	pseudogene	59.43154	59.43335	positive	MGI_C57BL6J_3648019	Gm8276	NCBI_Gene:666756,ENSEMBL:ENSMUSG00000102550	MGI:3648019	pseudogene	predicted gene 8276
3	pseudogene	59.46967	59.47409	negative	MGI_C57BL6J_5611516	Gm38288	ENSEMBL:ENSMUSG00000103211	MGI:5611516	pseudogene	predicted gene, 38288
3	gene	59.47493	59.47500	negative	MGI_C57BL6J_4414092	n-TVcac1	NCBI_Gene:102467620	MGI:4414092	tRNA gene	nuclear encoded tRNA valine 1 (anticodon CAC)
3	pseudogene	59.48302	59.48329	positive	MGI_C57BL6J_5610999	Gm37771	ENSEMBL:ENSMUSG00000104038	MGI:5610999	pseudogene	predicted gene, 37771
3	pseudogene	59.50558	59.53523	negative	MGI_C57BL6J_3644725	Gm4856	NCBI_Gene:229330,ENSEMBL:ENSMUSG00000103598	MGI:3644725	pseudogene	predicted gene 4856
3	pseudogene	59.60245	59.63576	negative	MGI_C57BL6J_3644280	Gm5709	NCBI_Gene:435732,ENSEMBL:ENSMUSG00000095128	MGI:3644280	pseudogene	predicted gene 5709
3	gene	59.66286	59.66528	positive	MGI_C57BL6J_5611154	Gm37926	ENSEMBL:ENSMUSG00000102480	MGI:5611154	unclassified gene	predicted gene, 37926
3	gene	59.72979	59.75240	positive	MGI_C57BL6J_3779495	Aadacl2fm2	NCBI_Gene:433597,ENSEMBL:ENSMUSG00000090527	MGI:3779495	protein coding gene	AADACL2 family member 2
3	pseudogene	59.73675	59.73686	negative	MGI_C57BL6J_5611436	Gm38208	ENSEMBL:ENSMUSG00000104471	MGI:5611436	pseudogene	predicted gene, 38208
3	pseudogene	59.73718	59.73732	negative	MGI_C57BL6J_5610807	Gm37579	ENSEMBL:ENSMUSG00000102390	MGI:5610807	pseudogene	predicted gene, 37579
3	pseudogene	59.76721	59.76891	positive	MGI_C57BL6J_3644451	Gm5539	NCBI_Gene:433598,ENSEMBL:ENSMUSG00000103986	MGI:3644451	pseudogene	predicted gene 5539
3	gene	59.77781	59.84682	positive	MGI_C57BL6J_1921922	4930449A18Rik	ENSEMBL:ENSMUSG00000074589	MGI:1921922	protein coding gene	RIKEN cDNA 4930449A18 gene
3	pseudogene	59.78322	59.78863	negative	MGI_C57BL6J_3780925	Gm2756	NCBI_Gene:100040407,ENSEMBL:ENSMUSG00000102757	MGI:3780925	pseudogene	predicted gene 2756
3	gene	59.83837	59.84682	positive	MGI_C57BL6J_4361133	Gm16527	NCBI_Gene:669780	MGI:4361133	protein coding gene	predicted gene, 16527
3	gene	59.86105	59.87731	positive	MGI_C57BL6J_3643798	Aadacl2fm3	NCBI_Gene:666803,ENSEMBL:ENSMUSG00000095522	MGI:3643798	protein coding gene	AADACL2 family member 3
3	gene	59.92521	59.93795	positive	MGI_C57BL6J_3028051	Aadacl2fm1	NCBI_Gene:229333,ENSEMBL:ENSMUSG00000036951	MGI:3028051	protein coding gene	AADACL2 family member 1
3	pseudogene	59.95231	59.97359	positive	MGI_C57BL6J_3819177	Gm9696	NCBI_Gene:676914,ENSEMBL:ENSMUSG00000070465	MGI:3819177	pseudogene	predicted gene 9696
3	gene	60.00674	60.02542	positive	MGI_C57BL6J_3646333	Aadacl2	NCBI_Gene:639634,ENSEMBL:ENSMUSG00000091376	MGI:3646333	protein coding gene	arylacetamide deacetylase like 2
3	pseudogene	60.02036	60.02087	negative	MGI_C57BL6J_5010612	Gm18427	NCBI_Gene:100417154,ENSEMBL:ENSMUSG00000103177	MGI:5010612	pseudogene	predicted gene, 18427
3	gene	60.02572	60.04016	positive	MGI_C57BL6J_1915008	Aadac	NCBI_Gene:67758,ENSEMBL:ENSMUSG00000027761	MGI:1915008	protein coding gene	arylacetamide deacetylase
3	gene	60.08187	60.08757	positive	MGI_C57BL6J_1934135	Sucnr1	NCBI_Gene:84112,ENSEMBL:ENSMUSG00000027762	MGI:1934135	protein coding gene	succinate receptor 1
3	gene	60.12764	60.12775	negative	MGI_C57BL6J_5454159	Gm24382	ENSEMBL:ENSMUSG00000084647	MGI:5454159	snRNA gene	predicted gene, 24382
3	gene	60.29342	60.30941	negative	MGI_C57BL6J_5592809	Gm33650	NCBI_Gene:102636642	MGI:5592809	lncRNA gene	predicted gene, 33650
3	pseudogene	60.34219	60.34309	negative	MGI_C57BL6J_3779880	Tgif1-ps	NCBI_Gene:669823,ENSEMBL:ENSMUSG00000107270	MGI:3779880	pseudogene	TGFB-induced factor homeobox 1, pseudogene
3	gene	60.47279	60.62975	positive	MGI_C57BL6J_1928482	Mbnl1	NCBI_Gene:56758,ENSEMBL:ENSMUSG00000027763	MGI:1928482	protein coding gene	muscleblind like splicing factor 1
3	gene	60.53575	60.53974	positive	MGI_C57BL6J_5610817	Gm37589	ENSEMBL:ENSMUSG00000104235	MGI:5610817	unclassified gene	predicted gene, 37589
3	gene	60.57770	60.58136	positive	MGI_C57BL6J_5012001	Gm19816	NA	NA	unclassified gene	predicted gene%2c 19816
3	gene	60.60438	60.60776	positive	MGI_C57BL6J_5610716	Gm37488	ENSEMBL:ENSMUSG00000104125	MGI:5610716	unclassified gene	predicted gene, 37488
3	pseudogene	60.73763	60.73779	negative	MGI_C57BL6J_5611508	Gm38280	ENSEMBL:ENSMUSG00000104337	MGI:5611508	pseudogene	predicted gene, 38280
3	pseudogene	60.76958	60.77164	negative	MGI_C57BL6J_5592866	Gm33707	NCBI_Gene:102636711,ENSEMBL:ENSMUSG00000102298	MGI:5592866	pseudogene	predicted gene, 33707
3	gene	60.78148	61.00379	negative	MGI_C57BL6J_5610263	Gm37035	NCBI_Gene:105244455,ENSEMBL:ENSMUSG00000102564	MGI:5610263	lncRNA gene	predicted gene, 37035
3	gene	60.78836	60.79473	positive	MGI_C57BL6J_5611554	Gm38326	NCBI_Gene:102642162,ENSEMBL:ENSMUSG00000103587	MGI:5611554	lncRNA gene	predicted gene, 38326
3	pseudogene	60.86071	60.86109	positive	MGI_C57BL6J_5610213	Gm36985	ENSEMBL:ENSMUSG00000102490	MGI:5610213	pseudogene	predicted gene, 36985
3	pseudogene	60.87700	60.87884	positive	MGI_C57BL6J_3644852	Gm8325	NCBI_Gene:666853,ENSEMBL:ENSMUSG00000027694	MGI:3644852	pseudogene	predicted pseudogene 8325
3	gene	61.00279	61.00898	positive	MGI_C57BL6J_105049	P2ry1	NCBI_Gene:18441,ENSEMBL:ENSMUSG00000027765	MGI:105049	protein coding gene	purinergic receptor P2Y, G-protein coupled 1
3	pseudogene	61.29116	61.29145	negative	MGI_C57BL6J_5610947	Gm37719	ENSEMBL:ENSMUSG00000102242	MGI:5610947	pseudogene	predicted gene, 37719
3	pseudogene	61.32849	61.32923	negative	MGI_C57BL6J_5012086	Gm19901	NCBI_Gene:100503798,ENSEMBL:ENSMUSG00000102667	MGI:5012086	pseudogene	predicted gene, 19901
3	gene	61.35855	61.36190	negative	MGI_C57BL6J_5610924	Gm37696	ENSEMBL:ENSMUSG00000103473	MGI:5610924	lncRNA gene	predicted gene, 37696
3	gene	61.36164	61.36870	positive	MGI_C57BL6J_1921262	Rap2b	NCBI_Gene:74012,ENSEMBL:ENSMUSG00000036894	MGI:1921262	protein coding gene	RAP2B, member of RAS oncogene family
3	gene	61.36225	61.36595	negative	MGI_C57BL6J_3697707	B430305J03Rik	ENSEMBL:ENSMUSG00000053706	MGI:3697707	protein coding gene	RIKEN cDNA B430305J03 gene
3	gene	61.39215	61.41303	positive	MGI_C57BL6J_5622946	Gm40061	NCBI_Gene:105244456	MGI:5622946	lncRNA gene	predicted gene, 40061
3	pseudogene	61.46166	61.46288	negative	MGI_C57BL6J_3643135	Gm8349	NCBI_Gene:666891,ENSEMBL:ENSMUSG00000098208	MGI:3643135	pseudogene	predicted gene 8349
3	pseudogene	62.06754	62.06979	negative	MGI_C57BL6J_3780107	Gm9700	NCBI_Gene:676965,ENSEMBL:ENSMUSG00000104489	MGI:3780107	pseudogene	predicted gene 9700
3	gene	62.12321	62.12356	positive	MGI_C57BL6J_5610632	Gm37404	ENSEMBL:ENSMUSG00000103322	MGI:5610632	unclassified gene	predicted gene, 37404
3	gene	62.33752	62.34053	negative	MGI_C57BL6J_3704218	9330121J05Rik	ENSEMBL:ENSMUSG00000103502	MGI:3704218	lncRNA gene	RIKEN cDNA 9330121J05 gene
3	gene	62.33834	62.46222	positive	MGI_C57BL6J_1918053	Arhgef26	NCBI_Gene:622434,ENSEMBL:ENSMUSG00000036885	MGI:1918053	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 26
3	gene	62.34139	62.35052	negative	MGI_C57BL6J_5593082	Gm33923	NCBI_Gene:102637008	MGI:5593082	lncRNA gene	predicted gene, 33923
3	gene	62.46801	62.50703	negative	MGI_C57BL6J_1919412	Dhx36	NCBI_Gene:72162,ENSEMBL:ENSMUSG00000027770	MGI:1919412	protein coding gene	DEAH (Asp-Glu-Ala-His) box polypeptide 36
3	gene	62.52908	62.60544	negative	MGI_C57BL6J_2443628	Gpr149	NCBI_Gene:229357,ENSEMBL:ENSMUSG00000043441	MGI:2443628	protein coding gene	G protein-coupled receptor 149
3	gene	62.60493	62.76393	positive	MGI_C57BL6J_5593207	Gm34048	NCBI_Gene:102637165	MGI:5593207	lncRNA gene	predicted gene, 34048
3	pseudogene	62.76144	62.76202	positive	MGI_C57BL6J_5010567	Gm18382	NCBI_Gene:100417044,ENSEMBL:ENSMUSG00000103764	MGI:5010567	pseudogene	predicted gene, 18382
3	gene	62.77198	62.86064	positive	MGI_C57BL6J_5622947	Gm40062	NCBI_Gene:105244457	MGI:5622947	lncRNA gene	predicted gene, 40062
3	gene	62.86768	62.88900	positive	MGI_C57BL6J_5622948	Gm40063	NCBI_Gene:105244458	MGI:5622948	lncRNA gene	predicted gene, 40063
3	pseudogene	62.92376	62.92426	negative	MGI_C57BL6J_3780108	Gm9701	NCBI_Gene:676984,ENSEMBL:ENSMUSG00000063001	MGI:3780108	pseudogene	predicted gene 9701
3	gene	63.15222	63.15236	positive	MGI_C57BL6J_5452210	Gm22433	ENSEMBL:ENSMUSG00000089175	MGI:5452210	snoRNA gene	predicted gene, 22433
3	pseudogene	63.17311	63.17386	negative	MGI_C57BL6J_3645001	Gm8388	NCBI_Gene:666967,ENSEMBL:ENSMUSG00000102270	MGI:3645001	pseudogene	predicted gene 8388
3	gene	63.23282	63.24545	negative	MGI_C57BL6J_5622949	Gm40064	NCBI_Gene:105244459	MGI:5622949	lncRNA gene	predicted gene, 40064
3	gene	63.24154	63.38603	positive	MGI_C57BL6J_97004	Mme	NCBI_Gene:17380,ENSEMBL:ENSMUSG00000027820	MGI:97004	protein coding gene	membrane metallo endopeptidase
3	gene	63.43925	63.45790	positive	MGI_C57BL6J_5593399	Gm34240	NCBI_Gene:102637430,ENSEMBL:ENSMUSG00000104336	MGI:5593399	lncRNA gene	predicted gene, 34240
3	gene	63.48110	63.48391	negative	MGI_C57BL6J_5593461	Strit1	NCBI_Gene:102637511,ENSEMBL:ENSMUSG00000103476	MGI:5593461	protein coding gene	small transmembrane regulator of ion transport 1
3	gene	63.48388	63.48437	positive	MGI_C57BL6J_5610507	Gm37279	ENSEMBL:ENSMUSG00000102883	MGI:5610507	unclassified gene	predicted gene, 37279
3	gene	63.48899	63.48910	positive	MGI_C57BL6J_5454723	Gm24946	ENSEMBL:ENSMUSG00000088957	MGI:5454723	snRNA gene	predicted gene, 24946
3	gene	63.69620	63.89972	negative	MGI_C57BL6J_2683547	Plch1	NCBI_Gene:269437,ENSEMBL:ENSMUSG00000036834	MGI:2683547	protein coding gene	phospholipase C, eta 1
3	gene	63.77021	63.77031	positive	MGI_C57BL6J_5453277	Gm23500	ENSEMBL:ENSMUSG00000088360	MGI:5453277	snRNA gene	predicted gene, 23500
3	gene	63.79610	63.83685	positive	MGI_C57BL6J_5826444	Gm46807	NCBI_Gene:108168874	MGI:5826444	lncRNA gene	predicted gene, 46807
3	pseudogene	63.82579	63.82644	positive	MGI_C57BL6J_3802047	Gm16162	ENSEMBL:ENSMUSG00000090131	MGI:3802047	pseudogene	predicted gene 16162
3	pseudogene	63.84312	63.84407	positive	MGI_C57BL6J_3801947	Gm16129	ENSEMBL:ENSMUSG00000085290	MGI:3801947	pseudogene	predicted gene 16129
3	pseudogene	63.90543	63.90573	positive	MGI_C57BL6J_5593538	Gm34379	NCBI_Gene:102637617,ENSEMBL:ENSMUSG00000103905	MGI:5593538	pseudogene	predicted gene, 34379
3	gene	63.91468	63.92947	negative	MGI_C57BL6J_3607716	E130311K13Rik	NCBI_Gene:329659,ENSEMBL:ENSMUSG00000048581	MGI:3607716	protein coding gene	RIKEN cDNA E130311K13 gene
3	gene	63.93351	63.96477	negative	MGI_C57BL6J_1332247	Slc33a1	NCBI_Gene:11416,ENSEMBL:ENSMUSG00000027822	MGI:1332247	protein coding gene	solute carrier family 33 (acetyl-CoA transporter), member 1
3	gene	63.96363	63.96866	positive	MGI_C57BL6J_5477344	Gm26850	ENSEMBL:ENSMUSG00000097724	MGI:5477344	lncRNA gene	predicted gene, 26850
3	gene	63.96482	64.02258	positive	MGI_C57BL6J_2448526	Gmps	NCBI_Gene:229363,ENSEMBL:ENSMUSG00000027823	MGI:2448526	protein coding gene	guanine monophosphate synthetase
3	pseudogene	64.05303	64.05561	negative	MGI_C57BL6J_3757653	Vmn2r-ps3	NCBI_Gene:100124546,ENSEMBL:ENSMUSG00000090303	MGI:3757653	pseudogene	vomeronasal 2, receptor, pseudogene 3
3	gene	64.07977	64.22085	positive	MGI_C57BL6J_3645892	Vmn2r1	NCBI_Gene:56544,ENSEMBL:ENSMUSG00000027824	MGI:3645892	protein coding gene	vomeronasal 2, receptor 1
3	gene	64.10963	64.10974	positive	MGI_C57BL6J_5451942	Gm22165	ENSEMBL:ENSMUSG00000089039	MGI:5451942	snRNA gene	predicted gene, 22165
3	gene	64.11528	64.17092	negative	MGI_C57BL6J_3757666	Vmn2r2	NCBI_Gene:100125586,ENSEMBL:ENSMUSG00000043897	MGI:3757666	protein coding gene	vomeronasal 2, receptor 2
3	pseudogene	64.16339	64.16385	positive	MGI_C57BL6J_3779465	Gm5139	NCBI_Gene:380739,ENSEMBL:ENSMUSG00000093447	MGI:3779465	pseudogene	predicted gene 5139
3	pseudogene	64.19557	64.21368	negative	MGI_C57BL6J_5010479	Gm18294	NCBI_Gene:100416861,ENSEMBL:ENSMUSG00000093416	MGI:5010479	pseudogene	predicted gene, 18294
3	gene	64.23373	64.23546	positive	MGI_C57BL6J_5593621	Gm34462	NCBI_Gene:102637724	MGI:5593621	lncRNA gene	predicted gene, 34462
3	gene	64.25722	64.28971	negative	MGI_C57BL6J_3643995	Vmn2r3	NCBI_Gene:637004,ENSEMBL:ENSMUSG00000091572	MGI:3643995	protein coding gene	vomeronasal 2, receptor 3
3	gene	64.27582	64.27619	negative	MGI_C57BL6J_1345615	Ifld3	NA	NA	unclassified gene	induced in fatty liver dystrophy 3
3	gene	64.31841	64.31856	negative	MGI_C57BL6J_5453674	Gm23897	ENSEMBL:ENSMUSG00000088735	MGI:5453674	snoRNA gene	predicted gene, 23897
3	pseudogene	64.32866	64.33285	positive	MGI_C57BL6J_3757669	Vmn2r-ps4	NCBI_Gene:100124547,ENSEMBL:ENSMUSG00000093503	MGI:3757669	pseudogene	vomeronasal 2, receptor, pseudogene 4
3	pseudogene	64.33956	64.35772	negative	MGI_C57BL6J_3645404	Vmn2r-ps5	NCBI_Gene:667031,ENSEMBL:ENSMUSG00000091967	MGI:3645404	polymorphic pseudogene	vomeronasal 2, receptor, pseudogene 5
3	gene	64.38304	64.41537	negative	MGI_C57BL6J_3648229	Vmn2r4	NCBI_Gene:637053,ENSEMBL:ENSMUSG00000092049	MGI:3648229	protein coding gene	vomeronasal 2, receptor 4
3	pseudogene	64.43688	64.43829	negative	MGI_C57BL6J_3757678	Vmn2r-ps6	NCBI_Gene:100124548,ENSEMBL:ENSMUSG00000093395	MGI:3757678	pseudogene	vomeronasal 2, receptor, pseudogene 6
3	pseudogene	64.44260	64.44397	negative	MGI_C57BL6J_3757679	Vmn2r-ps7	NCBI_Gene:672951,ENSEMBL:ENSMUSG00000093546	MGI:3757679	pseudogene	vomeronasal 2, receptor, pseudogene 7
3	pseudogene	64.44797	64.46009	positive	MGI_C57BL6J_5313103	Gm20656	ENSEMBL:ENSMUSG00000093671	MGI:5313103	pseudogene	predicted gene 20656
3	pseudogene	64.47702	64.47932	positive	MGI_C57BL6J_3757680	Vmn2r-ps8	NCBI_Gene:100124549,ENSEMBL:ENSMUSG00000094482	MGI:3757680	pseudogene	vomeronasal 2, receptor, pseudogene 8
3	gene	64.48861	64.50984	negative	MGI_C57BL6J_3649074	Vmn2r5	NCBI_Gene:667060,ENSEMBL:ENSMUSG00000068999	MGI:3649074	protein coding gene	vomeronasal 2, receptor 5
3	gene	64.53131	64.56583	negative	MGI_C57BL6J_3649068	Vmn2r6	NCBI_Gene:667069,ENSEMBL:ENSMUSG00000090581	MGI:3649068	protein coding gene	vomeronasal 2, receptor 6
3	pseudogene	64.59152	64.59290	negative	MGI_C57BL6J_3757686	Vmn2r-ps9	NCBI_Gene:100124550,ENSEMBL:ENSMUSG00000093699	MGI:3757686	pseudogene	vomeronasal 2, receptor, pseudogene 9
3	pseudogene	64.59691	64.60577	positive	MGI_C57BL6J_5313104	Gm20657	ENSEMBL:ENSMUSG00000093484	MGI:5313104	pseudogene	predicted gene 20657
3	pseudogene	64.60043	64.60114	positive	MGI_C57BL6J_3781218	Gm3040	NCBI_Gene:100416170	MGI:3781218	pseudogene	predicted gene 3040
3	pseudogene	64.62169	64.62399	positive	MGI_C57BL6J_3757943	Vmn2r-ps10	NCBI_Gene:100124554,ENSEMBL:ENSMUSG00000095107	MGI:3757943	pseudogene	vomeronasal 2, receptor, pseudogene 10
3	pseudogene	64.63257	64.84474	negative	MGI_C57BL6J_2441682	Vmn2r-ps11	NCBI_Gene:319210,ENSEMBL:ENSMUSG00000093434	MGI:2441682	pseudogene	vomeronasal 2, receptor, pseudogene 11
3	gene	64.63286	64.84474	negative	MGI_C57BL6J_5504054	Gm26939	ENSEMBL:ENSMUSG00000097538	MGI:5504054	lncRNA gene	predicted gene, 26939
3	gene	64.68504	64.84476	negative	MGI_C57BL6J_2441693	Vmn2r7	NCBI_Gene:319217,ENSEMBL:ENSMUSG00000062200	MGI:2441693	protein coding gene	vomeronasal 2, receptor 7
3	pseudogene	64.74475	64.74564	negative	MGI_C57BL6J_3757944	Vmn2r-ps12	NCBI_Gene:100125273,ENSEMBL:ENSMUSG00000093474	MGI:3757944	pseudogene	vomeronasal 2, receptor, pseudogene 12
3	gene	64.89447	64.89460	negative	MGI_C57BL6J_5454999	Gm25222	ENSEMBL:ENSMUSG00000088824	MGI:5454999	snoRNA gene	predicted gene, 25222
3	pseudogene	64.89885	64.89976	positive	MGI_C57BL6J_3757946	Vmn2r-ps13	NCBI_Gene:670110,ENSEMBL:ENSMUSG00000093767	MGI:3757946	pseudogene	vomeronasal 2, receptor, pseudogene 13
3	gene	64.94905	65.37823	positive	MGI_C57BL6J_109155	Kcnab1	NCBI_Gene:16497,ENSEMBL:ENSMUSG00000027827	MGI:109155	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, beta member 1
3	gene	64.94922	65.22370	positive	MGI_C57BL6J_5611276	Gm38048	ENSEMBL:ENSMUSG00000102437	MGI:5611276	lncRNA gene	predicted gene, 38048
3	gene	65.13306	65.30268	negative	MGI_C57BL6J_2443553	A330015K06Rik	NCBI_Gene:102637797,ENSEMBL:ENSMUSG00000104093	MGI:2443553	lncRNA gene	RIKEN cDNA A330015K06 gene
3	gene	65.32402	65.34943	negative	MGI_C57BL6J_2442748	A730090N16Rik	NCBI_Gene:319798,ENSEMBL:ENSMUSG00000090120	MGI:2442748	lncRNA gene	RIKEN cDNA A730090N16 gene
3	gene	65.37965	65.39262	negative	MGI_C57BL6J_1914687	Ssr3	NCBI_Gene:67437,ENSEMBL:ENSMUSG00000027828	MGI:1914687	protein coding gene	signal sequence receptor, gamma
3	pseudogene	65.39332	65.39629	positive	MGI_C57BL6J_3644824	Gm5540	NCBI_Gene:433604,ENSEMBL:ENSMUSG00000048916	MGI:3644824	pseudogene	predicted pseudogene 5540
3	gene	65.44941	65.47981	positive	MGI_C57BL6J_5593735	Gm34576	NCBI_Gene:102637876	MGI:5593735	lncRNA gene	predicted gene, 34576
3	gene	65.49409	65.49563	negative	MGI_C57BL6J_5593939	Gm34780	NCBI_Gene:102638146,ENSEMBL:ENSMUSG00000103513	MGI:5593939	lncRNA gene	predicted gene, 34780
3	gene	65.49517	65.51729	positive	MGI_C57BL6J_5622951	Gm40066	NCBI_Gene:105244461	MGI:5622951	lncRNA gene	predicted gene, 40066
3	pseudogene	65.50628	65.50664	negative	MGI_C57BL6J_5610237	Gm37009	ENSEMBL:ENSMUSG00000103880	MGI:5610237	pseudogene	predicted gene, 37009
3	gene	65.50646	65.52004	negative	MGI_C57BL6J_5621388	Gm38503	NCBI_Gene:102637953	MGI:5621388	lncRNA gene	predicted gene, 38503
3	gene	65.50726	65.52941	negative	MGI_C57BL6J_1918254	4931440P22Rik	NCBI_Gene:71004,ENSEMBL:ENSMUSG00000074580	MGI:1918254	lncRNA gene	RIKEN cDNA 4931440P22 gene
3	gene	65.52570	65.52579	positive	MGI_C57BL6J_5452056	Gm22279	ENSEMBL:ENSMUSG00000087825	MGI:5452056	snRNA gene	predicted gene, 22279
3	gene	65.52841	65.55552	positive	MGI_C57BL6J_2159210	Tiparp	NCBI_Gene:99929,ENSEMBL:ENSMUSG00000034640	MGI:2159210	protein coding gene	TCDD-inducible poly(ADP-ribose) polymerase
3	gene	65.57522	65.58085	negative	MGI_C57BL6J_5594083	Gm34924	NCBI_Gene:102638334	MGI:5594083	lncRNA gene	predicted gene, 34924
3	pseudogene	65.61350	65.61532	positive	MGI_C57BL6J_3648046	Gm5847	NCBI_Gene:545530,ENSEMBL:ENSMUSG00000082280	MGI:3648046	pseudogene	predicted gene 5847
3	pseudogene	65.61537	65.61617	negative	MGI_C57BL6J_5611461	Gm38233	ENSEMBL:ENSMUSG00000103294	MGI:5611461	pseudogene	predicted gene, 38233
3	gene	65.65929	65.65943	positive	MGI_C57BL6J_5531019	Mir8120	miRBase:MI0026052,NCBI_Gene:102465905,ENSEMBL:ENSMUSG00000098944	MGI:5531019	miRNA gene	microRNA 8120
3	gene	65.65954	65.83248	positive	MGI_C57BL6J_3645902	Lekr1	NCBI_Gene:624866,ENSEMBL:ENSMUSG00000074579	MGI:3645902	protein coding gene	leucine, glutamate and lysine rich 1
3	gene	65.67839	65.68088	positive	MGI_C57BL6J_5611004	Gm37776	ENSEMBL:ENSMUSG00000104037	MGI:5611004	unclassified gene	predicted gene, 37776
3	gene	65.77151	65.77162	negative	MGI_C57BL6J_5455532	Gm25755	ENSEMBL:ENSMUSG00000065330	MGI:5455532	snRNA gene	predicted gene, 25755
3	gene	65.82912	65.87228	negative	MGI_C57BL6J_5610587	Gm37359	ENSEMBL:ENSMUSG00000103620	MGI:5610587	lncRNA gene	predicted gene, 37359
3	gene	65.86327	65.86483	negative	MGI_C57BL6J_5610359	Gm37131	ENSEMBL:ENSMUSG00000103440	MGI:5610359	unclassified gene	predicted gene, 37131
3	gene	65.92610	65.92828	negative	MGI_C57BL6J_5594198	Gm35039	NCBI_Gene:102638487	MGI:5594198	lncRNA gene	predicted gene, 35039
3	pseudogene	65.93349	65.93391	negative	MGI_C57BL6J_5610265	Gm37037	ENSEMBL:ENSMUSG00000102566	MGI:5610265	pseudogene	predicted gene, 37037
3	gene	65.94591	65.95839	negative	MGI_C57BL6J_1922664	Ccnl1	NCBI_Gene:56706,ENSEMBL:ENSMUSG00000027829	MGI:1922664	protein coding gene	cyclin L1
3	gene	65.95776	65.96204	positive	MGI_C57BL6J_5610533	Gm37305	ENSEMBL:ENSMUSG00000103041	MGI:5610533	lncRNA gene	predicted gene, 37305
3	pseudogene	65.96873	65.97028	negative	MGI_C57BL6J_5594265	Gm35106	NCBI_Gene:105244463,ENSEMBL:ENSMUSG00000102914	MGI:5594265	pseudogene	predicted gene, 35106
3	gene	65.96991	65.97192	positive	MGI_C57BL6J_5610306	Gm37078	ENSEMBL:ENSMUSG00000102652	MGI:5610306	unclassified gene	predicted gene, 37078
3	pseudogene	65.98716	65.98975	negative	MGI_C57BL6J_5011209	Gm19024	NCBI_Gene:100418133,ENSEMBL:ENSMUSG00000103641	MGI:5011209	pseudogene	predicted gene, 19024
3	pseudogene	66.02950	66.03152	negative	MGI_C57BL6J_3643872	Gm6546	NCBI_Gene:625048,ENSEMBL:ENSMUSG00000103369	MGI:3643872	pseudogene	predicted gene 6546
3	gene	66.05356	66.29707	negative	MGI_C57BL6J_1920039	Veph1	NCBI_Gene:72789,ENSEMBL:ENSMUSG00000027831	MGI:1920039	protein coding gene	ventricular zone expressed PH domain-containing 1
3	gene	66.08668	66.08779	positive	MGI_C57BL6J_5611050	Gm37822	ENSEMBL:ENSMUSG00000104189	MGI:5611050	unclassified gene	predicted gene, 37822
3	gene	66.08811	66.08826	negative	MGI_C57BL6J_5456219	Gm26442	ENSEMBL:ENSMUSG00000064522	MGI:5456219	snRNA gene	predicted gene, 26442
3	pseudogene	66.09981	66.10006	positive	MGI_C57BL6J_5610201	Gm36973	ENSEMBL:ENSMUSG00000104307	MGI:5610201	pseudogene	predicted gene, 36973
3	pseudogene	66.12840	66.12975	negative	MGI_C57BL6J_98800	Tpi-rs2	NCBI_Gene:111205,ENSEMBL:ENSMUSG00000097968	MGI:98800	pseudogene	triosephosphate isomerase related sequence 2
3	pseudogene	66.19109	66.19124	negative	MGI_C57BL6J_5610558	Gm37330	ENSEMBL:ENSMUSG00000103208	MGI:5610558	pseudogene	predicted gene, 37330
3	gene	66.21989	66.22581	positive	MGI_C57BL6J_104641	Ptx3	NCBI_Gene:19288,ENSEMBL:ENSMUSG00000027832	MGI:104641	protein coding gene	pentraxin related gene
3	pseudogene	66.36454	66.36463	positive	MGI_C57BL6J_6275305	Gm50014	ENSEMBL:ENSMUSG00000117623	MGI:6275305	pseudogene	predicted gene, 50014
3	gene	66.37430	66.38810	positive	MGI_C57BL6J_5594343	Gm35184	NCBI_Gene:102638679	MGI:5594343	lncRNA gene	predicted gene, 35184
3	gene	66.40041	66.40607	positive	MGI_C57BL6J_5594395	Gm35236	NCBI_Gene:102638746	MGI:5594395	lncRNA gene	predicted gene, 35236
3	pseudogene	66.56278	66.56355	negative	MGI_C57BL6J_5010137	Gm17952	NCBI_Gene:100416166,ENSEMBL:ENSMUSG00000103600	MGI:5010137	pseudogene	predicted gene, 17952
3	pseudogene	66.88235	66.88314	positive	MGI_C57BL6J_3646021	Gm6555	NCBI_Gene:625115,ENSEMBL:ENSMUSG00000103700	MGI:3646021	pseudogene	predicted gene 6555
3	pseudogene	66.90736	66.90777	negative	MGI_C57BL6J_5611584	Gm38356	ENSEMBL:ENSMUSG00000103318	MGI:5611584	pseudogene	predicted gene, 38356
3	pseudogene	66.95354	66.95386	positive	MGI_C57BL6J_5663653	Gm43516	ENSEMBL:ENSMUSG00000105794	MGI:5663653	pseudogene	predicted gene 43516
3	gene	66.97172	66.98177	negative	MGI_C57BL6J_1201673	Shox2	NCBI_Gene:20429,ENSEMBL:ENSMUSG00000027833	MGI:1201673	protein coding gene	short stature homeobox 2
3	gene	66.98139	67.35840	positive	MGI_C57BL6J_1914130	Rsrc1	NCBI_Gene:66880,ENSEMBL:ENSMUSG00000034544	MGI:1914130	protein coding gene	arginine/serine-rich coiled-coil 1
3	gene	67.05596	67.05606	positive	MGI_C57BL6J_5452072	Gm22295	ENSEMBL:ENSMUSG00000065245	MGI:5452072	snRNA gene	predicted gene, 22295
3	gene	67.36546	67.37516	negative	MGI_C57BL6J_4937036	Gm17402	ENSEMBL:ENSMUSG00000090408	MGI:4937036	protein coding gene	predicted gene, 17402
3	gene	67.37410	67.40000	positive	MGI_C57BL6J_1341819	Mlf1	NCBI_Gene:17349,ENSEMBL:ENSMUSG00000048416	MGI:1341819	protein coding gene	myeloid leukemia factor 1
3	gene	67.43010	67.47653	positive	MGI_C57BL6J_107339	Gfm1	NCBI_Gene:28030,ENSEMBL:ENSMUSG00000027774	MGI:107339	protein coding gene	G elongation factor, mitochondrial 1
3	gene	67.45800	67.46393	negative	MGI_C57BL6J_107633	Lxn	NCBI_Gene:17035,ENSEMBL:ENSMUSG00000047557	MGI:107633	protein coding gene	latexin
3	gene	67.47698	67.47882	positive	MGI_C57BL6J_5662705	Gm42568	ENSEMBL:ENSMUSG00000103703	MGI:5662705	unclassified gene	predicted gene 42568
3	gene	67.47889	67.51552	negative	MGI_C57BL6J_1924461	Rarres1	NCBI_Gene:109222,ENSEMBL:ENSMUSG00000049404	MGI:1924461	protein coding gene	retinoic acid receptor responder (tazarotene induced) 1
3	gene	67.51567	67.51966	positive	MGI_C57BL6J_5622952	Gm40067	NCBI_Gene:105244464	MGI:5622952	lncRNA gene	predicted gene, 40067
3	gene	67.52266	67.55343	negative	MGI_C57BL6J_5594458	Gm35299	NCBI_Gene:102638825,ENSEMBL:ENSMUSG00000103718	MGI:5594458	lncRNA gene	predicted gene, 35299
3	gene	67.57057	67.57282	negative	MGI_C57BL6J_1921179	4930402C01Rik	ENSEMBL:ENSMUSG00000104382	MGI:1921179	lncRNA gene	RIKEN cDNA 4930402C01 gene
3	gene	67.57316	67.57329	negative	MGI_C57BL6J_5455696	Gm25919	ENSEMBL:ENSMUSG00000077459	MGI:5455696	snoRNA gene	predicted gene, 25919
3	gene	67.58274	67.60424	positive	MGI_C57BL6J_1914118	Mfsd1	NCBI_Gene:66868,ENSEMBL:ENSMUSG00000027775	MGI:1914118	protein coding gene	major facilitator superfamily domain containing 1
3	pseudogene	67.60575	67.60785	negative	MGI_C57BL6J_3648243	Gm8515	NCBI_Gene:667207,ENSEMBL:ENSMUSG00000103206	MGI:3648243	pseudogene	predicted gene 8515
3	pseudogene	67.61978	67.62073	negative	MGI_C57BL6J_2685258	Gm412	NCBI_Gene:208424,ENSEMBL:ENSMUSG00000103606	MGI:2685258	pseudogene	predicted gene 412
3	pseudogene	67.68436	67.68475	negative	MGI_C57BL6J_5610829	Gm37601	ENSEMBL:ENSMUSG00000102746	MGI:5610829	pseudogene	predicted gene, 37601
3	pseudogene	67.74197	67.74330	negative	MGI_C57BL6J_5010902	Gm18717	NCBI_Gene:100417618,ENSEMBL:ENSMUSG00000104477	MGI:5010902	pseudogene	predicted gene, 18717
3	gene	67.75360	67.75565	positive	MGI_C57BL6J_5594566	Gm35407	NCBI_Gene:102638975	MGI:5594566	lncRNA gene	predicted gene, 35407
3	gene	67.75566	67.76628	positive	MGI_C57BL6J_5622953	Gm40068	NCBI_Gene:105244465	MGI:5622953	lncRNA gene	predicted gene, 40068
3	gene	67.89222	68.05659	positive	MGI_C57BL6J_3644166	Iqcj	NCBI_Gene:208426,ENSEMBL:ENSMUSG00000051777	MGI:3644166	protein coding gene	IQ motif containing J
3	gene	67.89222	68.62648	positive	MGI_C57BL6J_5439400	Iqschfp	NCBI_Gene:100505386,ENSEMBL:ENSMUSG00000102422	MGI:5439400	protein coding gene	Iqcj and Schip1 fusion protein
3	gene	68.06480	68.62648	positive	MGI_C57BL6J_1353557	Schip1	NCBI_Gene:30953,ENSEMBL:ENSMUSG00000027777	MGI:1353557	protein coding gene	schwannomin interacting protein 1
3	pseudogene	68.30377	68.31036	negative	MGI_C57BL6J_3648047	Gm5848	NCBI_Gene:545531	MGI:3648047	pseudogene	predicted pseudogene 5848
3	pseudogene	68.33319	68.33378	positive	MGI_C57BL6J_3642851	Gm10292	NCBI_Gene:631379,ENSEMBL:ENSMUSG00000102846	MGI:3642851	pseudogene	predicted gene 10292
3	gene	68.40778	68.41470	positive	MGI_C57BL6J_3641783	Gm10723	ENSEMBL:ENSMUSG00000103345	MGI:3641783	unclassified gene	predicted gene 10723
3	gene	68.54752	68.54771	negative	MGI_C57BL6J_5451850	Gm22073	ENSEMBL:ENSMUSG00000084617	MGI:5451850	snRNA gene	predicted gene, 22073
3	gene	68.69064	68.69855	positive	MGI_C57BL6J_96539	Il12a	NCBI_Gene:16159,ENSEMBL:ENSMUSG00000027776	MGI:96539	protein coding gene	interleukin 12a
3	pseudogene	68.73314	68.73808	positive	MGI_C57BL6J_3708676	Gm10040	ENSEMBL:ENSMUSG00000058360	MGI:3708676	pseudogene	predicted gene 10040
3	gene	68.75991	68.76143	negative	MGI_C57BL6J_1922468	4930535E02Rik	ENSEMBL:ENSMUSG00000102677	MGI:1922468	lncRNA gene	RIKEN cDNA 4930535E02 gene
3	gene	68.76136	68.76267	positive	MGI_C57BL6J_5594743	Gm35584	NCBI_Gene:102639225,ENSEMBL:ENSMUSG00000102936	MGI:5594743	lncRNA gene	predicted gene, 35584
3	pseudogene	68.84608	68.84741	positive	MGI_C57BL6J_3644317	Gm7270	NCBI_Gene:639530,ENSEMBL:ENSMUSG00000103218,ENSEMBL:ENSMUSG00000102853	MGI:3644317	pseudogene	predicted gene 7270
3	gene	68.86792	68.87027	negative	MGI_C57BL6J_4937275	Gm17641	ENSEMBL:ENSMUSG00000091272	MGI:4937275	protein coding gene	predicted gene, 17641
3	gene	68.86959	68.87216	positive	MGI_C57BL6J_1915975	1110032F04Rik	NCBI_Gene:68725,ENSEMBL:ENSMUSG00000046999	MGI:1915975	protein coding gene	RIKEN cDNA 1110032F04 gene
3	gene	68.89250	69.00464	negative	MGI_C57BL6J_1915509	Ift80	NCBI_Gene:68259,ENSEMBL:ENSMUSG00000027778	MGI:1915509	protein coding gene	intraflagellar transport 80
3	pseudogene	68.90017	68.90045	negative	MGI_C57BL6J_5313136	Gm20689	ENSEMBL:ENSMUSG00000093384	MGI:5313136	pseudogene	predicted gene 20689
3	pseudogene	68.90181	68.90216	positive	MGI_C57BL6J_5313137	Gm20690	ENSEMBL:ENSMUSG00000093730,ENSEMBL:ENSMUSG00000103007	MGI:5313137	pseudogene	predicted gene 20690
3	pseudogene	68.90216	68.90278	negative	MGI_C57BL6J_5010773	Gm18588	NCBI_Gene:100417394,ENSEMBL:ENSMUSG00000093402	MGI:5010773	pseudogene	predicted gene, 18588
3	pseudogene	68.90382	68.90415	negative	MGI_C57BL6J_5313138	Gm20691	ENSEMBL:ENSMUSG00000093505	MGI:5313138	pseudogene	predicted gene 20691
3	gene	68.91650	68.91732	negative	MGI_C57BL6J_6097561	Gm48183	ENSEMBL:ENSMUSG00000111756	MGI:6097561	unclassified gene	predicted gene, 48183
3	gene	69.00474	69.03462	positive	MGI_C57BL6J_1917349	Smc4	NCBI_Gene:70099,ENSEMBL:ENSMUSG00000034349	MGI:1917349	protein coding gene	structural maintenance of chromosomes 4
3	gene	69.00977	69.00983	positive	MGI_C57BL6J_2676842	Mir15b	miRBase:MI0000140,NCBI_Gene:387175,ENSEMBL:ENSMUSG00000065580	MGI:2676842	miRNA gene	microRNA 15b
3	gene	69.00990	69.01000	positive	MGI_C57BL6J_3618690	Mir16-2	miRBase:MI0000566,NCBI_Gene:723949,ENSEMBL:ENSMUSG00000065606	MGI:3618690	miRNA gene	microRNA 16-2
3	gene	69.03529	69.04640	negative	MGI_C57BL6J_1914199	Trim59	NCBI_Gene:66949,ENSEMBL:ENSMUSG00000034317	MGI:1914199	protein coding gene	tripartite motif-containing 59
3	gene	69.06065	69.06525	positive	MGI_C57BL6J_2442898	9630025H16Rik	NCBI_Gene:105244467	MGI:2442898	lncRNA gene	RIKEN cDNA 9630025H16 gene
3	gene	69.06715	69.12711	negative	MGI_C57BL6J_1100848	Kpna4	NCBI_Gene:16649,ENSEMBL:ENSMUSG00000027782	MGI:1100848	protein coding gene	karyopherin (importin) alpha 4
3	gene	69.08510	69.08545	negative	MGI_C57BL6J_5451786	Gm22009	ENSEMBL:ENSMUSG00000089417	MGI:5451786	snoRNA gene	predicted gene, 22009
3	gene	69.11974	69.12272	negative	MGI_C57BL6J_5610786	Gm37558	ENSEMBL:ENSMUSG00000103094	MGI:5610786	unclassified gene	predicted gene, 37558
3	gene	69.13123	69.15718	positive	MGI_C57BL6J_2686493	Gm1647	NCBI_Gene:381452,ENSEMBL:ENSMUSG00000094763	MGI:2686493	lncRNA gene	predicted gene 1647
3	gene	69.22242	69.22362	positive	MGI_C57BL6J_1918869	Arl14	NCBI_Gene:71619,ENSEMBL:ENSMUSG00000098207	MGI:1918869	protein coding gene	ADP-ribosylation factor-like 14
3	gene	69.25461	69.26383	positive	MGI_C57BL6J_5622955	Gm40070	NCBI_Gene:105244468	MGI:5622955	lncRNA gene	predicted gene, 40070
3	gene	69.31686	69.56080	positive	MGI_C57BL6J_2139740	Ppm1l	NCBI_Gene:242083,ENSEMBL:ENSMUSG00000027784	MGI:2139740	protein coding gene	protein phosphatase 1 (formerly 2C)-like
3	gene	69.31816	69.31929	negative	MGI_C57BL6J_1920514	1700037N05Rik	NA	NA	unclassified gene	RIKEN cDNA 1700037N05 gene
3	pseudogene	69.32001	69.32062	negative	MGI_C57BL6J_4938041	Gm17214	NCBI_Gene:100416279,ENSEMBL:ENSMUSG00000091315	MGI:4938041	pseudogene	predicted gene 17214
3	pseudogene	69.33519	69.33579	negative	MGI_C57BL6J_4938039	Gm17212	NCBI_Gene:100416280,ENSEMBL:ENSMUSG00000090941	MGI:4938039	pseudogene	predicted gene 17212
3	gene	69.37640	69.38370	positive	MGI_C57BL6J_2443158	A330078L11Rik	NA	NA	unclassified gene	RIKEN cDNA A330078L11 gene
3	pseudogene	69.43101	69.43238	negative	MGI_C57BL6J_4938040	Gm17213	NCBI_Gene:100417908,ENSEMBL:ENSMUSG00000090743	MGI:4938040	pseudogene	predicted gene 17213
3	pseudogene	69.56624	69.56747	negative	MGI_C57BL6J_3644126	Gm8565	NCBI_Gene:667309,ENSEMBL:ENSMUSG00000098006	MGI:3644126	pseudogene	predicted gene 8565
3	gene	69.57392	69.59896	negative	MGI_C57BL6J_1349405	B3galnt1	NCBI_Gene:26879,ENSEMBL:ENSMUSG00000043300	MGI:1349405	protein coding gene	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
3	pseudogene	69.66177	69.66216	positive	MGI_C57BL6J_5610608	Gm37380	ENSEMBL:ENSMUSG00000102342	MGI:5610608	pseudogene	predicted gene, 37380
3	gene	69.68547	69.68558	positive	MGI_C57BL6J_5455398	Gm25621	ENSEMBL:ENSMUSG00000087848	MGI:5455398	rRNA gene	predicted gene, 25621
3	pseudogene	69.71694	69.71744	negative	MGI_C57BL6J_98039	Rpl32-ps	NCBI_Gene:19952,ENSEMBL:ENSMUSG00000068969	MGI:98039	pseudogene	ribosomal protein L32, pseudogene
3	gene	69.72199	69.75637	positive	MGI_C57BL6J_2140103	Nmd3	NCBI_Gene:97112,ENSEMBL:ENSMUSG00000027787	MGI:2140103	protein coding gene	NMD3 ribosome export adaptor
3	gene	69.75311	69.75637	positive	MGI_C57BL6J_2442565	9530051E23Rik	NA	NA	unclassified gene	RIKEN cDNA 9530051E23 gene
3	pseudogene	69.80846	69.80902	negative	MGI_C57BL6J_5011240	Gm19055	NCBI_Gene:100418175	MGI:5011240	pseudogene	predicted gene, 19055
3	gene	69.81954	69.85994	negative	MGI_C57BL6J_1913433	Sptssb	NCBI_Gene:66183,ENSEMBL:ENSMUSG00000043461	MGI:1913433	protein coding gene	serine palmitoyltransferase, small subunit B
3	gene	69.88247	69.88411	positive	MGI_C57BL6J_5594976	Gm35817	NCBI_Gene:102639522	MGI:5594976	lncRNA gene	predicted gene, 35817
3	pseudogene	69.95481	69.95568	negative	MGI_C57BL6J_5010080	Gm17895	NCBI_Gene:100416058,ENSEMBL:ENSMUSG00000103549	MGI:5010080	pseudogene	predicted gene, 17895
3	gene	69.96232	69.96245	negative	MGI_C57BL6J_5453261	Gm23484	ENSEMBL:ENSMUSG00000077366	MGI:5453261	snoRNA gene	predicted gene, 23484
3	pseudogene	69.96328	69.96347	positive	MGI_C57BL6J_5611012	Gm37784	ENSEMBL:ENSMUSG00000102525	MGI:5611012	pseudogene	predicted gene, 37784
3	gene	70.00761	70.02871	positive	MGI_C57BL6J_2685260	Otol1	NCBI_Gene:229389,ENSEMBL:ENSMUSG00000027788	MGI:2685260	protein coding gene	otolin 1
3	pseudogene	70.05975	70.06047	positive	MGI_C57BL6J_5610909	Gm37681	ENSEMBL:ENSMUSG00000103020	MGI:5610909	pseudogene	predicted gene, 37681
3	pseudogene	70.11625	70.11653	negative	MGI_C57BL6J_5610813	Gm37585	ENSEMBL:ENSMUSG00000103113	MGI:5610813	pseudogene	predicted gene, 37585
3	gene	70.22875	70.22887	negative	MGI_C57BL6J_5453254	Gm23477	ENSEMBL:ENSMUSG00000089507	MGI:5453254	snoRNA gene	predicted gene, 23477
3	pseudogene	70.41328	70.41388	positive	MGI_C57BL6J_3644892	Gm6631	NCBI_Gene:625868,ENSEMBL:ENSMUSG00000102663	MGI:3644892	pseudogene	predicted gene 6631
3	pseudogene	70.56626	70.56730	negative	MGI_C57BL6J_5610441	Gm37213	ENSEMBL:ENSMUSG00000104023	MGI:5610441	pseudogene	predicted gene, 37213
3	pseudogene	70.68909	70.68938	positive	MGI_C57BL6J_3642422	Gm10780	ENSEMBL:ENSMUSG00000074877	MGI:3642422	pseudogene	predicted gene 10780
3	gene	70.77238	70.80729	negative	MGI_C57BL6J_3643829	Gm6634	NCBI_Gene:625901,ENSEMBL:ENSMUSG00000097252	MGI:3643829	lncRNA gene	predicted gene 6634
3	pseudogene	71.40104	71.40155	negative	MGI_C57BL6J_3646556	Gm8599	NCBI_Gene:108168916,ENSEMBL:ENSMUSG00000102666	MGI:3646556	pseudogene	predicted gene 8599
3	pseudogene	71.46523	71.46567	negative	MGI_C57BL6J_5611533	Gm38305	ENSEMBL:ENSMUSG00000103396	MGI:5611533	pseudogene	predicted gene, 38305
3	pseudogene	71.67252	71.67712	positive	MGI_C57BL6J_5011379	Gm19194	NCBI_Gene:100418413,ENSEMBL:ENSMUSG00000103815	MGI:5011379	pseudogene	predicted gene, 19194
3	pseudogene	71.85918	71.86015	positive	MGI_C57BL6J_3643186	Gm8604	NCBI_Gene:667385,ENSEMBL:ENSMUSG00000098189	MGI:3643186	pseudogene	predicted gene 8604
3	pseudogene	71.89484	71.89499	positive	MGI_C57BL6J_5610845	Gm37617	ENSEMBL:ENSMUSG00000103465	MGI:5610845	pseudogene	predicted gene, 37617
3	pseudogene	72.00992	72.01046	negative	MGI_C57BL6J_5010416	Gm18231	NCBI_Gene:100416754	MGI:5010416	pseudogene	predicted gene, 18231
3	pseudogene	72.05000	72.05062	negative	MGI_C57BL6J_3781529	Gm3351	NCBI_Gene:100041459,ENSEMBL:ENSMUSG00000103279	MGI:3781529	pseudogene	predicted gene 3351
3	pseudogene	72.18074	72.18095	positive	MGI_C57BL6J_5610831	Gm37603	ENSEMBL:ENSMUSG00000103859	MGI:5610831	pseudogene	predicted gene, 37603
3	gene	72.31294	72.31303	positive	MGI_C57BL6J_5530847	Gm27465	ENSEMBL:ENSMUSG00000098869	MGI:5530847	unclassified non-coding RNA gene	predicted gene, 27465
3	pseudogene	72.60384	72.60435	negative	MGI_C57BL6J_5611129	Gm37901	ENSEMBL:ENSMUSG00000103078	MGI:5611129	pseudogene	predicted gene, 37901
3	gene	72.73783	72.73798	negative	MGI_C57BL6J_5452228	Gm22451	ENSEMBL:ENSMUSG00000084752	MGI:5452228	snRNA gene	predicted gene, 22451
3	gene	72.88855	72.96786	negative	MGI_C57BL6J_1917233	Sis	NCBI_Gene:69983,ENSEMBL:ENSMUSG00000027790	MGI:1917233	protein coding gene	sucrase isomaltase (alpha-glucosidase)
3	gene	73.04197	73.04384	negative	MGI_C57BL6J_5610284	Gm37056	ENSEMBL:ENSMUSG00000102753	MGI:5610284	unclassified gene	predicted gene, 37056
3	gene	73.04725	73.05788	negative	MGI_C57BL6J_2679447	Slitrk3	NCBI_Gene:386750,ENSEMBL:ENSMUSG00000048304	MGI:2679447	protein coding gene	SLIT and NTRK-like family, member 3
3	gene	73.06632	73.59483	positive	MGI_C57BL6J_5434110	Gm20754	NCBI_Gene:626082,ENSEMBL:ENSMUSG00000103428	MGI:5434110	lncRNA gene	predicted gene, 20754
3	gene	73.14685	73.14696	positive	MGI_C57BL6J_5454321	Gm24544	ENSEMBL:ENSMUSG00000077050	MGI:5454321	miRNA gene	predicted gene, 24544
3	gene	73.16409	73.16621	positive	MGI_C57BL6J_5610953	Gm37725	ENSEMBL:ENSMUSG00000102916	MGI:5610953	unclassified gene	predicted gene, 37725
3	gene	73.20770	73.20800	negative	MGI_C57BL6J_5452315	Gm22538	ENSEMBL:ENSMUSG00000088794	MGI:5452315	unclassified non-coding RNA gene	predicted gene, 22538
3	gene	73.32943	73.47001	positive	MGI_C57BL6J_5611581	Gm38353	ENSEMBL:ENSMUSG00000102820	MGI:5611581	lncRNA gene	predicted gene, 38353
3	gene	73.35121	73.48165	negative	MGI_C57BL6J_1921943	4930509J09Rik	NCBI_Gene:74693,ENSEMBL:ENSMUSG00000102362	MGI:1921943	lncRNA gene	RIKEN cDNA 4930509J09 gene
3	gene	73.63581	73.70844	negative	MGI_C57BL6J_894278	Bche	NCBI_Gene:12038,ENSEMBL:ENSMUSG00000027792	MGI:894278	protein coding gene	butyrylcholinesterase
3	pseudogene	73.93305	73.93412	positive	MGI_C57BL6J_3644686	Gm8625	NCBI_Gene:667425,ENSEMBL:ENSMUSG00000102859	MGI:3644686	pseudogene	predicted gene 8625
3	gene	74.00922	74.01728	negative	MGI_C57BL6J_5012541	Gm20356	NCBI_Gene:100504692,ENSEMBL:ENSMUSG00000104096	MGI:5012541	lncRNA gene	predicted gene, 20356
3	gene	74.10541	74.12645	negative	MGI_C57BL6J_5595228	Gm36069	NCBI_Gene:102639855	MGI:5595228	lncRNA gene	predicted gene, 36069
3	pseudogene	74.24226	74.29687	negative	MGI_C57BL6J_3779552	Gm6098	NCBI_Gene:100861784,ENSEMBL:ENSMUSG00000096400	MGI:3779552	pseudogene	predicted gene 6098
3	pseudogene	74.32353	74.32399	negative	MGI_C57BL6J_5610278	Gm37050	ENSEMBL:ENSMUSG00000104227	MGI:5610278	pseudogene	predicted gene, 37050
3	pseudogene	74.81472	74.81534	positive	MGI_C57BL6J_3647458	Gm8643	NCBI_Gene:108168917,ENSEMBL:ENSMUSG00000102809	MGI:3647458	pseudogene	predicted gene 8643
3	gene	75.02240	75.02461	negative	MGI_C57BL6J_5610692	Gm37464	ENSEMBL:ENSMUSG00000102420	MGI:5610692	unclassified gene	predicted gene, 37464
3	gene	75.03790	75.16505	negative	MGI_C57BL6J_2674085	Zbbx	NCBI_Gene:213234,ENSEMBL:ENSMUSG00000034151	MGI:2674085	protein coding gene	zinc finger, B-box domain containing
3	gene	75.16506	75.20808	positive	MGI_C57BL6J_5622956	Gm40071	NCBI_Gene:105244469	MGI:5622956	lncRNA gene	predicted gene, 40071
3	gene	75.24236	75.27008	negative	MGI_C57BL6J_1915181	Serpini2	NCBI_Gene:67931,ENSEMBL:ENSMUSG00000034139	MGI:1915181	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 2
3	gene	75.27393	75.48216	negative	MGI_C57BL6J_3645287	Wdr49	NCBI_Gene:213248,ENSEMBL:ENSMUSG00000104301	MGI:3645287	protein coding gene	WD repeat domain 49
3	pseudogene	75.39132	75.39264	positive	MGI_C57BL6J_5010021	Gm17836	NCBI_Gene:100415953,ENSEMBL:ENSMUSG00000103444	MGI:5010021	pseudogene	predicted gene, 17836
3	gene	75.51649	75.55686	negative	MGI_C57BL6J_1928396	Pdcd10	NCBI_Gene:56426,ENSEMBL:ENSMUSG00000027835	MGI:1928396	protein coding gene	programmed cell death 10
3	gene	75.55753	75.64350	positive	MGI_C57BL6J_1194506	Serpini1	NCBI_Gene:20713,ENSEMBL:ENSMUSG00000027834	MGI:1194506	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 1
3	gene	75.61935	75.62336	positive	MGI_C57BL6J_5610900	Gm37672	ENSEMBL:ENSMUSG00000102625	MGI:5610900	unclassified gene	predicted gene, 37672
3	gene	75.64744	75.65573	negative	MGI_C57BL6J_1916443	Platr10	NCBI_Gene:69193,ENSEMBL:ENSMUSG00000099370	MGI:1916443	lncRNA gene	pluripotency associated transcript 10
3	gene	75.69895	75.69946	negative	MGI_C57BL6J_5610421	Gm37193	ENSEMBL:ENSMUSG00000102188	MGI:5610421	unclassified gene	predicted gene, 37193
3	gene	75.71479	75.71492	positive	MGI_C57BL6J_5455623	Gm25846	ENSEMBL:ENSMUSG00000088638	MGI:5455623	snoRNA gene	predicted gene, 25846
3	gene	75.74820	75.78765	positive	MGI_C57BL6J_5579839	Gm29133	ENSEMBL:ENSMUSG00000100962	MGI:5579839	protein coding gene	predicted gene 29133
3	gene	75.87508	75.95695	negative	MGI_C57BL6J_1920374	Golim4	NCBI_Gene:73124,ENSEMBL:ENSMUSG00000034109	MGI:1920374	protein coding gene	golgi integral membrane protein 4
3	gene	75.95212	75.95430	positive	MGI_C57BL6J_5610913	Gm37685	ENSEMBL:ENSMUSG00000103024	MGI:5610913	unclassified gene	predicted gene, 37685
3	gene	75.95610	76.00114	positive	MGI_C57BL6J_5610484	Gm37256	ENSEMBL:ENSMUSG00000104448	MGI:5610484	lncRNA gene	predicted gene, 37256
3	pseudogene	76.04092	76.04172	negative	MGI_C57BL6J_5010613	Gm18428	NCBI_Gene:100417155,ENSEMBL:ENSMUSG00000104223	MGI:5010613	pseudogene	predicted gene, 18428
3	gene	76.07427	76.71002	positive	MGI_C57BL6J_2442179	Fstl5	NCBI_Gene:213262,ENSEMBL:ENSMUSG00000034098	MGI:2442179	protein coding gene	follistatin-like 5
3	gene	76.54669	76.55025	positive	MGI_C57BL6J_5611125	Gm37897	ENSEMBL:ENSMUSG00000103920	MGI:5611125	unclassified gene	predicted gene, 37897
3	pseudogene	76.82206	76.82240	positive	MGI_C57BL6J_5610518	Gm37290	ENSEMBL:ENSMUSG00000103702	MGI:5610518	pseudogene	predicted gene, 37290
3	pseudogene	76.88450	76.88533	positive	MGI_C57BL6J_5011416	Gm19231	NCBI_Gene:100418471,ENSEMBL:ENSMUSG00000102216	MGI:5011416	pseudogene	predicted gene, 19231
3	gene	77.10521	77.10528	negative	MGI_C57BL6J_5453421	Gm23644	ENSEMBL:ENSMUSG00000088481	MGI:5453421	snoRNA gene	predicted gene, 23644
3	pseudogene	77.56081	77.56394	negative	MGI_C57BL6J_2674154	Dnmt3a-ps1	NCBI_Gene:445261,ENSEMBL:ENSMUSG00000102489	MGI:2674154	pseudogene	DNA methyltransferase 3A, pseudogene 1
3	gene	77.56496	77.57134	negative	MGI_C57BL6J_5611034	Gm37806	ENSEMBL:ENSMUSG00000103849	MGI:5611034	unclassified gene	predicted gene, 37806
3	pseudogene	77.69137	77.69223	negative	MGI_C57BL6J_5010480	Gm18295	NCBI_Gene:100416866	MGI:5010480	pseudogene	predicted gene, 18295
3	gene	77.70289	77.70439	negative	MGI_C57BL6J_5611423	Gm38195	ENSEMBL:ENSMUSG00000102872	MGI:5611423	unclassified gene	predicted gene, 38195
3	pseudogene	77.87278	77.87315	negative	MGI_C57BL6J_5610804	Gm37576	ENSEMBL:ENSMUSG00000102393	MGI:5610804	pseudogene	predicted gene, 37576
3	pseudogene	77.96138	77.96280	positive	MGI_C57BL6J_5010904	Gm18719	NCBI_Gene:100417620,ENSEMBL:ENSMUSG00000105026	MGI:5010904	pseudogene	predicted gene, 18719
3	pseudogene	78.00646	78.00698	positive	MGI_C57BL6J_3648953	Gm6677	NCBI_Gene:626461,ENSEMBL:ENSMUSG00000103312	MGI:3648953	pseudogene	predicted gene 6677
3	pseudogene	78.08583	78.08740	negative	MGI_C57BL6J_3643677	Gm8684	NCBI_Gene:667526,ENSEMBL:ENSMUSG00000102637	MGI:3643677	pseudogene	predicted gene 8684
3	pseudogene	78.13446	78.13558	positive	MGI_C57BL6J_3645908	Gm6680	NCBI_Gene:626479,ENSEMBL:ENSMUSG00000103817	MGI:3645908	pseudogene	predicted gene 6680
3	gene	78.40430	78.40594	negative	MGI_C57BL6J_5663463	Gm43326	ENSEMBL:ENSMUSG00000104782	MGI:5663463	unclassified gene	predicted gene 43326
3	gene	78.40616	78.41077	negative	MGI_C57BL6J_5595447	Gm36288	NCBI_Gene:102640153	MGI:5595447	lncRNA gene	predicted gene, 36288
3	pseudogene	78.48658	78.48868	negative	MGI_C57BL6J_3705708	Gm15442	NCBI_Gene:100041691,ENSEMBL:ENSMUSG00000084370	MGI:3705708	pseudogene	predicted gene 15442
3	pseudogene	78.75862	78.75946	positive	MGI_C57BL6J_5011137	Gm18952	NCBI_Gene:100418022,ENSEMBL:ENSMUSG00000102341	MGI:5011137	pseudogene	predicted gene, 18952
3	gene	78.78973	78.79223	negative	MGI_C57BL6J_5595500	Gm36341	NCBI_Gene:102640221	MGI:5595500	lncRNA gene	predicted gene, 36341
3	gene	78.84222	78.84257	positive	MGI_C57BL6J_5454526	Gm24749	ENSEMBL:ENSMUSG00000088463	MGI:5454526	unclassified non-coding RNA gene	predicted gene, 24749
3	pseudogene	78.86489	78.86557	negative	MGI_C57BL6J_5010138	Gm17953	NCBI_Gene:100416167,ENSEMBL:ENSMUSG00000102438	MGI:5010138	pseudogene	predicted gene, 17953
3	pseudogene	78.89183	78.89247	negative	MGI_C57BL6J_3646590	Gm5277	NCBI_Gene:383883,ENSEMBL:ENSMUSG00000091361	MGI:3646590	pseudogene	predicted gene 5277
3	pseudogene	78.91724	78.91846	positive	MGI_C57BL6J_3641638	Gm10291	NCBI_Gene:100041748,ENSEMBL:ENSMUSG00000070443	MGI:3641638	pseudogene	predicted pseudogene 10291
3	gene	78.91846	78.93631	negative	MGI_C57BL6J_5621427	Gm38542	NCBI_Gene:102641233	MGI:5621427	lncRNA gene	predicted gene, 38542
3	pseudogene	78.96549	78.96715	negative	MGI_C57BL6J_3704220	Gm9762	NCBI_Gene:100041766,ENSEMBL:ENSMUSG00000037096	MGI:3704220	pseudogene	predicted pseudogene 9762
3	gene	78.97992	78.98005	positive	MGI_C57BL6J_5453217	Gm23440	ENSEMBL:ENSMUSG00000077487	MGI:5453217	snoRNA gene	predicted gene, 23440
3	gene	79.06251	79.28724	negative	MGI_C57BL6J_2659071	Rapgef2	NCBI_Gene:76089,ENSEMBL:ENSMUSG00000062232	MGI:2659071	protein coding gene	Rap guanine nucleotide exchange factor (GEF) 2
3	gene	79.19637	79.19648	positive	MGI_C57BL6J_5453927	Gm24150	ENSEMBL:ENSMUSG00000064693	MGI:5453927	snRNA gene	predicted gene, 24150
3	gene	79.21292	79.25391	positive	MGI_C57BL6J_1918174	4921511C10Rik	NCBI_Gene:70924,ENSEMBL:ENSMUSG00000104585	MGI:1918174	lncRNA gene	RIKEN cDNA 4921511C10 gene
3	gene	79.23228	79.23413	negative	MGI_C57BL6J_2443462	B930012P20Rik	NA	NA	unclassified gene	RIKEN cDNA B930012P20 gene
3	gene	79.28717	79.28985	positive	MGI_C57BL6J_2686494	6430573P05Rik	ENSEMBL:ENSMUSG00000102545	MGI:2686494	lncRNA gene	RIKEN cDNA 6430573P05 gene
3	gene	79.33420	79.33658	negative	MGI_C57BL6J_5622957	Gm40072	NCBI_Gene:105244470	MGI:5622957	lncRNA gene	predicted gene, 40072
3	gene	79.33666	79.46413	positive	MGI_C57BL6J_4936993	Gm17359	NCBI_Gene:100233207,ENSEMBL:ENSMUSG00000091685	MGI:4936993	protein coding gene	predicted gene, 17359
3	gene	79.45597	79.56780	negative	MGI_C57BL6J_2683054	Fnip2	NCBI_Gene:329679,ENSEMBL:ENSMUSG00000061175	MGI:2683054	protein coding gene	folliculin interacting protein 2
3	gene	79.50979	79.51210	negative	MGI_C57BL6J_5595601	Gm36442	NCBI_Gene:102640362	MGI:5595601	lncRNA gene	predicted gene, 36442
3	gene	79.55131	79.55219	negative	MGI_C57BL6J_3781690	Gm3513	ENSEMBL:ENSMUSG00000089746	MGI:3781690	lncRNA gene	predicted gene 3513
3	gene	79.56819	79.57332	positive	MGI_C57BL6J_1923129	4930589L23Rik	NCBI_Gene:75879,ENSEMBL:ENSMUSG00000068957	MGI:1923129	lncRNA gene	RIKEN cDNA 4930589L23 gene
3	pseudogene	79.58259	79.58323	positive	MGI_C57BL6J_5594226	Gm35067	ENSEMBL:ENSMUSG00000103564	MGI:5594226	pseudogene	predicted gene, 35067
3	gene	79.59134	79.60365	positive	MGI_C57BL6J_1914988	Ppid	NCBI_Gene:67738,ENSEMBL:ENSMUSG00000027804	MGI:1914988	protein coding gene	peptidylprolyl isomerase D (cyclophilin D)
3	gene	79.60379	79.62950	negative	MGI_C57BL6J_106100	Etfdh	NCBI_Gene:66841,ENSEMBL:ENSMUSG00000027809	MGI:106100	protein coding gene	electron transferring flavoprotein, dehydrogenase
3	gene	79.61054	79.61183	negative	MGI_C57BL6J_5611201	Gm37973	ENSEMBL:ENSMUSG00000102370	MGI:5611201	unclassified gene	predicted gene, 37973
3	gene	79.62908	79.63282	positive	MGI_C57BL6J_1923189	4930579G24Rik	NCBI_Gene:75939,ENSEMBL:ENSMUSG00000027811	MGI:1923189	protein coding gene	RIKEN cDNA 4930579G24 gene
3	gene	79.64160	79.73795	negative	MGI_C57BL6J_2682211	Rxfp1	NCBI_Gene:381489,ENSEMBL:ENSMUSG00000034009	MGI:2682211	protein coding gene	relaxin/insulin-like family peptide receptor 1
3	gene	79.67337	79.67688	negative	MGI_C57BL6J_5504099	Gm26984	ENSEMBL:ENSMUSG00000098204	MGI:5504099	lncRNA gene	predicted gene, 26984
3	gene	79.81256	79.85279	negative	MGI_C57BL6J_1917902	Tmem144	NCBI_Gene:70652,ENSEMBL:ENSMUSG00000027956	MGI:1917902	protein coding gene	transmembrane protein 144
3	gene	79.83493	79.83504	positive	MGI_C57BL6J_5456197	Gm26420	ENSEMBL:ENSMUSG00000077461	MGI:5456197	snRNA gene	predicted gene, 26420
3	gene	79.85287	79.85666	positive	MGI_C57BL6J_5622958	Gm40073	NCBI_Gene:105244471	MGI:5622958	lncRNA gene	predicted gene, 40073
3	gene	79.85929	79.88681	negative	MGI_C57BL6J_5595728	Gm36569	NCBI_Gene:102640530,ENSEMBL:ENSMUSG00000102191	MGI:5595728	lncRNA gene	predicted gene, 36569
3	gene	79.88447	79.94628	positive	MGI_C57BL6J_1915909	Gask1b	NCBI_Gene:68659,ENSEMBL:ENSMUSG00000027955	MGI:1915909	protein coding gene	golgi associated kinase 1B

Additive covariates

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	4.477543	4.268859
0.05	4.271614	4.226328
0.1	4.013569	4.170710

#summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, gm$gmap, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i]," - ICI vs. EOI (with additive covariate)"))
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}


print("with normal kinship")

[1] “with normal kinship”

outka <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=kinship)

plot_lod(outka,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=K)

plot_lod(outa,gm$gmap)

out = outa

peaks<-find_peaks(out, gm$gmap, threshold=3, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	1	16.864	3.412488	1.500	16.923
1	rz.age	2	18.183	3.379545	4.198	27.065

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- as.character(peaks$chr[i])
  lod <- peaks$lod[i]
  pos <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$pos[i] & mapdf$chr == peaks$chr[i])]
  ci_lo <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_lo[i] & mapdf$chr == peaks$chr[i])]
  ci_hi <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_hi[i] & mapdf$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	1	38.466817	3.41248813820139	3.010274	38.528148
1	rz.age	2	25.932111	3.37954483116128	7.555753	44.523921

for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, covars[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  coeff <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, kinship=K[[chr]])
  blup <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, kinship=K[[chr]])

  #plot_coef(coeff, 
  #     gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1coeff])")
  #     )

  plot_coef(blup, 
       gm$gmap[chr], columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1blup])")
       )
  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  
}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
1	gene	3.073253	3.074322	positive	MGI_C57BL6J_1918292	4933401J01Rik	ENSEMBL:ENSMUSG00000102693	MGI:1918292	unclassified gene	RIKEN cDNA 4933401J01 gene
1	gene	3.102016	3.102125	positive	MGI_C57BL6J_5455983	Gm26206	ENSEMBL:ENSMUSG00000064842	MGI:5455983	snRNA gene	predicted gene, 26206
1	gene	3.199733	3.672278	negative	MGI_C57BL6J_3528744	Xkr4	NCBI_Gene:497097,ENSEMBL:ENSMUSG00000051951	MGI:3528744	protein coding gene	X-linked Kx blood group related 4
1	pseudogene	3.252734	3.253236	positive	MGI_C57BL6J_5011141	Gm18956	NCBI_Gene:100418032,ENSEMBL:ENSMUSG00000102851	MGI:5011141	pseudogene	predicted gene, 18956
1	gene	3.361552	3.377812	positive	MGI_C57BL6J_5622470	Gm39585	NCBI_Gene:105243853	MGI:5622470	lncRNA gene	predicted gene, 39585
1	gene	3.365731	3.368549	negative	MGI_C57BL6J_5610408	Gm37180	ENSEMBL:ENSMUSG00000103377	MGI:5610408	unclassified gene	predicted gene, 37180
1	gene	3.375556	3.377788	negative	MGI_C57BL6J_5610591	Gm37363	ENSEMBL:ENSMUSG00000104017	MGI:5610591	unclassified gene	predicted gene, 37363
1	gene	3.464977	3.467285	negative	MGI_C57BL6J_5610914	Gm37686	ENSEMBL:ENSMUSG00000103025	MGI:5610914	unclassified gene	predicted gene, 37686
1	gene	3.466587	3.513553	positive	MGI_C57BL6J_3780162	Gm1992	ENSEMBL:ENSMUSG00000089699	MGI:3780162	lncRNA gene	predicted gene 1992
1	gene	3.512451	3.514507	negative	MGI_C57BL6J_5610557	Gm37329	ENSEMBL:ENSMUSG00000103201	MGI:5610557	unclassified gene	predicted gene, 37329
1	pseudogene	3.531795	3.532736	positive	MGI_C57BL6J_3648497	Gm7341	NCBI_Gene:664792,ENSEMBL:ENSMUSG00000103147	MGI:3648497	pseudogene	predicted gene 7341
1	gene	3.592892	3.595903	negative	MGI_C57BL6J_5611376	Gm38148	ENSEMBL:ENSMUSG00000103161	MGI:5611376	unclassified gene	predicted gene, 38148
1	gene	3.647309	3.658904	negative	MGI_C57BL6J_5012123	Gm19938	ENSEMBL:ENSMUSG00000102331	MGI:5012123	lncRNA gene	predicted gene, 19938
1	gene	3.680155	3.681788	positive	MGI_C57BL6J_3642703	Gm10568	ENSEMBL:ENSMUSG00000102348	MGI:3642703	unclassified gene	predicted gene 10568
1	gene	3.752010	3.754360	positive	MGI_C57BL6J_5611613	Gm38385	ENSEMBL:ENSMUSG00000102592	MGI:5611613	unclassified gene	predicted gene, 38385
1	gene	3.783876	3.783933	negative	MGI_C57BL6J_5530778	Gm27396	ENSEMBL:ENSMUSG00000088333	MGI:5530778	snRNA gene	predicted gene, 27396
1	gene	3.905739	3.986215	negative	MGI_C57BL6J_5610609	Gm37381	ENSEMBL:ENSMUSG00000102343	MGI:5610609	lncRNA gene	predicted gene, 37381
1	gene	3.999557	4.409266	negative	MGI_C57BL6J_1341105	Rp1	NCBI_Gene:19888,ENSEMBL:ENSMUSG00000025900	MGI:1341105	protein coding gene	retinitis pigmentosa 1 (human)
1	gene	4.115673	4.243365	negative	MGI_C57BL6J_5621602	Gm38717	NCBI_Gene:105242467	MGI:5621602	protein coding gene	predicted gene, 38717
1	pseudogene	4.256234	4.261541	negative	MGI_C57BL6J_3644986	Gm6101	NCBI_Gene:619785,ENSEMBL:ENSMUSG00000102948	MGI:3644986	pseudogene	predicted gene 6101
1	gene	4.363346	4.364829	negative	MGI_C57BL6J_5610711	Gm37483	ENSEMBL:ENSMUSG00000104123	MGI:5610711	unclassified gene	predicted gene, 37483
1	gene	4.490928	4.497386	negative	MGI_C57BL6J_107543	Sox17	NCBI_Gene:20671,ENSEMBL:ENSMUSG00000025902	MGI:107543	protein coding gene	SRY (sex determining region Y)-box 17
1	gene	4.496551	4.499558	positive	MGI_C57BL6J_5610815	Gm37587	ENSEMBL:ENSMUSG00000104238	MGI:5610815	lncRNA gene	predicted gene, 37587
1	pseudogene	4.522817	4.526931	positive	MGI_C57BL6J_3643257	Gm7357	NCBI_Gene:664830,ENSEMBL:ENSMUSG00000102269	MGI:3643257	pseudogene	predicted gene 7357
1	gene	4.529017	4.529123	positive	MGI_C57BL6J_5452084	Gm22307	ENSEMBL:ENSMUSG00000096126	MGI:5452084	snRNA gene	predicted gene, 22307
1	pseudogene	4.534837	4.535286	negative	MGI_C57BL6J_5611304	Gm38076	ENSEMBL:ENSMUSG00000103003	MGI:5611304	pseudogene	predicted gene, 38076
1	gene	4.583127	4.608781	negative	MGI_C57BL6J_5610551	Gm37323	NCBI_Gene:108167609,ENSEMBL:ENSMUSG00000104328	MGI:5610551	lncRNA gene	predicted gene, 37323
1	gene	4.595057	4.602832	positive	MGI_C57BL6J_5622471	Gm39586	NCBI_Gene:105243854	MGI:5622471	lncRNA gene	predicted gene, 39586
1	gene	4.603255	4.606521	negative	MGI_C57BL6J_5825719	Gm46082	NCBI_Gene:108167610	MGI:5825719	lncRNA gene	predicted gene, 46082
1	gene	4.608937	4.617805	positive	MGI_C57BL6J_5589033	Gm29874	NCBI_Gene:102631571	MGI:5589033	lncRNA gene	predicted gene, 29874
1	pseudogene	4.610244	4.611629	positive	MGI_C57BL6J_3643485	Gm7369	NCBI_Gene:664853,ENSEMBL:ENSMUSG00000102735	MGI:3643485	pseudogene	predicted gene 7369
1	pseudogene	4.687934	4.689409	negative	MGI_C57BL6J_3646770	Gm6085	NCBI_Gene:619596,ENSEMBL:ENSMUSG00000098104	MGI:3646770	pseudogene	predicted gene 6085
1	pseudogene	4.692219	4.693424	negative	MGI_C57BL6J_3644547	Gm6119	NCBI_Gene:619980,ENSEMBL:ENSMUSG00000102175	MGI:3644547	pseudogene	predicted gene 6119
1	gene	4.723277	4.723379	negative	MGI_C57BL6J_5455270	Gm25493	ENSEMBL:ENSMUSG00000088000	MGI:5455270	snRNA gene	predicted gene, 25493
1	pseudogene	4.735046	4.735679	negative	MGI_C57BL6J_3780221	Gm2053	NCBI_Gene:100039121,ENSEMBL:ENSMUSG00000103265	MGI:3780221	pseudogene	predicted gene 2053
1	pseudogene	4.771105	4.772393	positive	MGI_C57BL6J_3647047	Gm6123	NCBI_Gene:620009,ENSEMBL:ENSMUSG00000103922	MGI:3647047	pseudogene	predicted gene 6123
1	gene	4.773198	4.785749	negative	MGI_C57BL6J_1351639	Mrpl15	NCBI_Gene:27395,ENSEMBL:ENSMUSG00000033845	MGI:1351639	protein coding gene	mitochondrial ribosomal protein L15
1	gene	4.778063	4.779212	negative	MGI_C57BL6J_5610372	Gm37144	ENSEMBL:ENSMUSG00000102275	MGI:5610372	unclassified gene	predicted gene, 37144
1	gene	4.807560	4.848410	positive	MGI_C57BL6J_1344588	Lypla1	NCBI_Gene:18777,ENSEMBL:ENSMUSG00000025903	MGI:1344588	protein coding gene	lysophospholipase 1
1	gene	4.807892	4.886770	positive	MGI_C57BL6J_5611216	Gm37988	ENSEMBL:ENSMUSG00000104217	MGI:5611216	protein coding gene	predicted gene, 37988
1	gene	4.857694	4.897909	positive	MGI_C57BL6J_1196624	Tcea1	NCBI_Gene:21399,ENSEMBL:ENSMUSG00000033813	MGI:1196624	protein coding gene	transcription elongation factor A (SII) 1
1	pseudogene	4.879202	4.880747	negative	MGI_C57BL6J_3648587	Gm6104	NCBI_Gene:619829,ENSEMBL:ENSMUSG00000062588	MGI:3648587	pseudogene	predicted gene 6104
1	gene	4.905751	4.906861	negative	MGI_C57BL6J_5610505	Gm37277	ENSEMBL:ENSMUSG00000103280	MGI:5610505	unclassified gene	predicted gene, 37277
1	gene	4.909573	5.070308	negative	MGI_C57BL6J_1929866	Rgs20	NCBI_Gene:58175,ENSEMBL:ENSMUSG00000002459	MGI:1929866	protein coding gene	regulator of G-protein signaling 20
1	pseudogene	4.927028	4.927299	negative	MGI_C57BL6J_4937927	Gm17100	ENSEMBL:ENSMUSG00000091305	MGI:4937927	pseudogene	predicted gene 17100
1	gene	4.938576	4.940710	negative	MGI_C57BL6J_5610307	Gm37079	ENSEMBL:ENSMUSG00000102653	MGI:5610307	unclassified gene	predicted gene, 37079
1	gene	4.968430	4.977005	positive	MGI_C57BL6J_3801909	Gm16041	NCBI_Gene:102631647,ENSEMBL:ENSMUSG00000085623	MGI:3801909	lncRNA gene	predicted gene 16041
1	pseudogene	5.063060	5.064658	positive	MGI_C57BL6J_4937928	Gm17101	NCBI_Gene:100417473,ENSEMBL:ENSMUSG00000091665	MGI:4937928	pseudogene	predicted gene 17101
1	gene	5.070018	5.163213	positive	MGI_C57BL6J_1914864	Atp6v1h	NCBI_Gene:108664,ENSEMBL:ENSMUSG00000033793	MGI:1914864	protein coding gene	ATPase, H+ transporting, lysosomal V1 subunit H
1	gene	5.156597	5.158506	positive	MGI_C57BL6J_2443922	B230334L07Rik	NA	NA	unclassified gene	RIKEN cDNA B230334L07 gene
1	pseudogene	5.276106	5.277337	negative	MGI_C57BL6J_3644877	Gm7182	NCBI_Gene:636659,ENSEMBL:ENSMUSG00000104352	MGI:3644877	pseudogene	predicted gene 7182
1	gene	5.307739	5.310017	positive	MGI_C57BL6J_5610795	Gm37567	ENSEMBL:ENSMUSG00000104046	MGI:5610795	unclassified gene	predicted gene, 37567
1	pseudogene	5.319710	5.320327	negative	MGI_C57BL6J_5011255	Gm19070	NCBI_Gene:100418201	MGI:5011255	pseudogene	predicted gene, 19070
1	gene	5.403547	5.405578	positive	MGI_C57BL6J_5611492	Gm38264	ENSEMBL:ENSMUSG00000102907	MGI:5611492	unclassified gene	predicted gene, 38264
1	gene	5.588450	5.606134	positive	MGI_C57BL6J_97439	Oprk1	NCBI_Gene:18387,ENSEMBL:ENSMUSG00000025905	MGI:97439	protein coding gene	opioid receptor, kappa 1
1	pseudogene	5.617837	5.618230	negative	MGI_C57BL6J_5610193	Gm36965	ENSEMBL:ENSMUSG00000103936	MGI:5610193	pseudogene	predicted gene, 36965
1	gene	5.644645	5.644745	negative	MGI_C57BL6J_5452240	Gm22463	ENSEMBL:ENSMUSG00000093015	MGI:5452240	miRNA gene	predicted gene, 22463
1	gene	5.842874	5.844672	negative	MGI_C57BL6J_5610657	Gm37429	ENSEMBL:ENSMUSG00000103519	MGI:5610657	unclassified gene	predicted gene, 37429
1	gene	5.913707	5.917398	negative	MGI_C57BL6J_891989	Npbwr1	NCBI_Gene:226304,ENSEMBL:ENSMUSG00000033774	MGI:891989	protein coding gene	neuropeptides B/W receptor 1
1	pseudogene	6.048963	6.050045	negative	MGI_C57BL6J_5011399	Gm19214	NCBI_Gene:100418441,ENSEMBL:ENSMUSG00000103090	MGI:5011399	pseudogene	predicted gene, 19214
1	gene	6.164706	6.167315	negative	MGI_C57BL6J_5825843	Gm46206	NCBI_Gene:108167788	MGI:5825843	lncRNA gene	predicted gene, 46206
1	gene	6.206197	6.276648	positive	MGI_C57BL6J_1341850	Rb1cc1	NCBI_Gene:12421,ENSEMBL:ENSMUSG00000025907	MGI:1341850	protein coding gene	RB1-inducible coiled-coil 1
1	gene	6.209863	6.216612	negative	MGI_C57BL6J_3604103	4732440D04Rik	NCBI_Gene:654788,ENSEMBL:ENSMUSG00000090031	MGI:3604103	lncRNA gene	RIKEN cDNA 4732440D04 gene
1	gene	6.359218	6.394731	positive	MGI_C57BL6J_3645495	Alkal1	NCBI_Gene:620393,ENSEMBL:ENSMUSG00000087247	MGI:3645495	protein coding gene	ALK and LTK ligand 1
1	gene	6.377512	6.382119	negative	MGI_C57BL6J_5825720	Gm46083	NCBI_Gene:108167611	MGI:5825720	lncRNA gene	predicted gene, 46083
1	pseudogene	6.380274	6.382392	positive	MGI_C57BL6J_3780316	Gm2147	NCBI_Gene:100039302,ENSEMBL:ENSMUSG00000103355	MGI:3780316	pseudogene	predicted gene 2147
1	pseudogene	6.382229	6.383180	negative	MGI_C57BL6J_3647903	Gm7417	NCBI_Gene:102631893,ENSEMBL:ENSMUSG00000102706	MGI:3647903	pseudogene	predicted gene 7417
1	pseudogene	6.429655	6.441296	negative	MGI_C57BL6J_5011211	Gm19026	NCBI_Gene:100418138,ENSEMBL:ENSMUSG00000103845	MGI:5011211	pseudogene	predicted gene, 19026
1	gene	6.487231	6.860940	positive	MGI_C57BL6J_2446700	St18	NCBI_Gene:240690,ENSEMBL:ENSMUSG00000033740	MGI:2446700	protein coding gene	suppression of tumorigenicity 18
1	gene	6.861237	6.864151	negative	MGI_C57BL6J_5662629	Gm42492	ENSEMBL:ENSMUSG00000103329	MGI:5662629	unclassified gene	predicted gene 42492
1	pseudogene	6.910464	6.911239	positive	MGI_C57BL6J_3647895	Gm7449	NCBI_Gene:665015,ENSEMBL:ENSMUSG00000104385	MGI:3647895	pseudogene	predicted gene 7449
1	pseudogene	6.916526	6.923642	positive	MGI_C57BL6J_5610336	Gm37108	NCBI_Gene:102641523,ENSEMBL:ENSMUSG00000102135	MGI:5610336	pseudogene	predicted gene, 37108
1	pseudogene	6.929759	6.929788	positive	MGI_C57BL6J_5610503	Gm37275	ENSEMBL:ENSMUSG00000103282	MGI:5610503	pseudogene	predicted gene, 37275
1	pseudogene	6.998217	6.998541	positive	MGI_C57BL6J_5610453	Gm37225	ENSEMBL:ENSMUSG00000102534	MGI:5610453	pseudogene	predicted gene, 37225
1	pseudogene	7.013762	7.013920	positive	MGI_C57BL6J_5610717	Gm37489	ENSEMBL:ENSMUSG00000102213	MGI:5610717	pseudogene	predicted gene, 37489
1	pseudogene	7.035881	7.037223	positive	MGI_C57BL6J_3645764	Gm5694	NCBI_Gene:435608,ENSEMBL:ENSMUSG00000103629	MGI:3645764	pseudogene	predicted gene 5694
1	gene	7.088892	7.173628	positive	MGI_C57BL6J_2441773	Pcmtd1	NCBI_Gene:319263,ENSEMBL:ENSMUSG00000051285	MGI:2441773	protein coding gene	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
1	pseudogene	7.136195	7.137827	negative	MGI_C57BL6J_5504098	Gm26983	NCBI_Gene:108167612,ENSEMBL:ENSMUSG00000098201	MGI:5504098	pseudogene	predicted gene, 26983
1	gene	7.148110	7.152137	positive	MGI_C57BL6J_5611600	Gm38372	ENSEMBL:ENSMUSG00000103509	MGI:5611600	unclassified gene	predicted gene, 38372
1	pseudogene	7.177675	7.179753	positive	MGI_C57BL6J_3642725	Gm9826	NCBI_Gene:545302,ENSEMBL:ENSMUSG00000048538	MGI:3642725	pseudogene	predicted gene 9826
1	pseudogene	7.188158	7.190142	negative	MGI_C57BL6J_97378	Nras-ps2	NCBI_Gene:18178,ENSEMBL:ENSMUSG00000103709	MGI:97378	pseudogene	neuroblastoma ras oncogene, pseudogene 2
1	gene	7.265803	7.265932	positive	MGI_C57BL6J_5453051	Gm23274	ENSEMBL:ENSMUSG00000077244	MGI:5453051	snoRNA gene	predicted gene, 23274
1	gene	7.314638	7.398666	negative	MGI_C57BL6J_5477395	Gm26901	NCBI_Gene:102632124,ENSEMBL:ENSMUSG00000097797	MGI:5477395	lncRNA gene	predicted gene, 26901
1	pseudogene	7.315451	7.316462	positive	MGI_C57BL6J_5011187	Gm19002	NCBI_Gene:100418102,ENSEMBL:ENSMUSG00000102768	MGI:5011187	pseudogene	predicted gene, 19002
1	pseudogene	7.410679	7.411996	positive	MGI_C57BL6J_5011169	Gm18984	NCBI_Gene:100418076,ENSEMBL:ENSMUSG00000103498	MGI:5011169	pseudogene	predicted gene, 18984
1	gene	7.497968	7.518149	positive	MGI_C57BL6J_5589573	Gm30414	ENSEMBL:ENSMUSG00000103067	MGI:5589573	lncRNA gene	predicted gene, 30414
1	pseudogene	7.591646	7.591931	positive	MGI_C57BL6J_5611019	Gm37791	ENSEMBL:ENSMUSG00000102320	MGI:5611019	pseudogene	predicted gene, 37791
1	pseudogene	7.597370	7.599482	positive	MGI_C57BL6J_3645544	Gm7470	NCBI_Gene:665063,ENSEMBL:ENSMUSG00000104226	MGI:3645544	pseudogene	predicted gene 7470
1	pseudogene	7.664051	7.665000	positive	MGI_C57BL6J_3645546	Rps2-ps2	NCBI_Gene:665069,ENSEMBL:ENSMUSG00000103903	MGI:3645546	pseudogene	ribosomal protein S2, pseudogene 2
1	pseudogene	7.728861	7.730565	negative	MGI_C57BL6J_5611444	Gm38216	ENSEMBL:ENSMUSG00000103557	MGI:5611444	pseudogene	predicted gene, 38216
1	pseudogene	7.767622	7.768739	negative	MGI_C57BL6J_5010088	Gm17903	NCBI_Gene:100416072	MGI:5010088	pseudogene	predicted gene, 17903
1	gene	8.108629	8.122449	negative	MGI_C57BL6J_5622474	Gm39589	NCBI_Gene:105243858	MGI:5622474	lncRNA gene	predicted gene, 39589
1	gene	8.359739	9.301066	negative	MGI_C57BL6J_1918346	Sntg1	NCBI_Gene:71096,ENSEMBL:ENSMUSG00000025909	MGI:1918346	protein coding gene	syntrophin, gamma 1
1	gene	8.450960	8.453491	negative	MGI_C57BL6J_5611252	Gm38024	ENSEMBL:ENSMUSG00000102647	MGI:5611252	unclassified gene	predicted gene, 38024
1	pseudogene	8.468426	8.468825	negative	MGI_C57BL6J_3826541	Gm16284	ENSEMBL:ENSMUSG00000086235	MGI:3826541	pseudogene	predicted gene 16284
1	gene	8.527780	8.531313	negative	MGI_C57BL6J_5611487	Gm38259	ENSEMBL:ENSMUSG00000102253	MGI:5611487	unclassified gene	predicted gene, 38259
1	gene	8.588615	8.588724	negative	MGI_C57BL6J_5453135	Gm23358	ENSEMBL:ENSMUSG00000093970	MGI:5453135	miRNA gene	predicted gene, 23358
1	gene	8.643696	8.644859	negative	MGI_C57BL6J_5610233	Gm37005	ENSEMBL:ENSMUSG00000103884	MGI:5610233	unclassified gene	predicted gene, 37005
1	pseudogene	8.791661	8.792229	negative	MGI_C57BL6J_3768636	Gm15452	NCBI_Gene:100039474,ENSEMBL:ENSMUSG00000084353	MGI:3768636	pseudogene	predicted gene 15452
1	pseudogene	8.815842	8.816039	positive	MGI_C57BL6J_5610192	Gm36964	ENSEMBL:ENSMUSG00000103933	MGI:5610192	pseudogene	predicted gene, 36964
1	gene	8.816138	8.816247	positive	MGI_C57BL6J_5454053	Gm24276	ENSEMBL:ENSMUSG00000076135	MGI:5454053	miRNA gene	predicted gene, 24276
1	pseudogene	8.855112	8.856334	negative	MGI_C57BL6J_3648859	Gm6152	NCBI_Gene:102632599,ENSEMBL:ENSMUSG00000086195	MGI:3648859	pseudogene	predicted gene 6152
1	pseudogene	8.856558	8.857402	positive	MGI_C57BL6J_3644942	Gm7445	NCBI_Gene:102632504,ENSEMBL:ENSMUSG00000104504	MGI:3644942	pseudogene	predicted gene 7445
1	pseudogene	8.962622	8.963865	negative	MGI_C57BL6J_3643471	Gm7493	NCBI_Gene:102632382,ENSEMBL:ENSMUSG00000066693	MGI:3643471	pseudogene	predicted gene 7493
1	gene	9.191067	9.192116	negative	MGI_C57BL6J_5610857	Gm37629	ENSEMBL:ENSMUSG00000102316	MGI:5610857	unclassified gene	predicted gene, 37629
1	pseudogene	9.258617	9.259134	negative	MGI_C57BL6J_5611236	Gm38008	ENSEMBL:ENSMUSG00000103819	MGI:5611236	pseudogene	predicted gene, 38008
1	gene	9.286922	9.290180	positive	MGI_C57BL6J_5610371	Gm37143	ENSEMBL:ENSMUSG00000102871	MGI:5610371	unclassified gene	predicted gene, 37143
1	pseudogene	9.396668	9.398687	negative	MGI_C57BL6J_3648954	Gm6187	NCBI_Gene:620853,ENSEMBL:ENSMUSG00000101571	MGI:3648954	pseudogene	predicted gene 6187
1	gene	9.437054	9.438070	positive	MGI_C57BL6J_5589878	Gm30719	NCBI_Gene:102632723	MGI:5589878	lncRNA gene	predicted gene, 30719
1	pseudogene	9.439741	9.440432	negative	MGI_C57BL6J_5010484	Gm18299	NCBI_Gene:100416881,ENSEMBL:ENSMUSG00000104428	MGI:5010484	pseudogene	predicted gene, 18299
1	pseudogene	9.450508	9.452040	positive	MGI_C57BL6J_3646401	Gm7512	NCBI_Gene:665138,ENSEMBL:ENSMUSG00000102272	MGI:3646401	pseudogene	predicted gene 7512
1	gene	9.458670	9.458772	positive	MGI_C57BL6J_5454542	Gm24765	ENSEMBL:ENSMUSG00000065625	MGI:5454542	snRNA gene	predicted gene, 24765
1	pseudogene	9.499338	9.501522	negative	MGI_C57BL6J_5010485	Gm18300	NCBI_Gene:100416882,ENSEMBL:ENSMUSG00000103411	MGI:5010485	pseudogene	predicted gene, 18300
1	gene	9.545408	9.547455	positive	MGI_C57BL6J_1929721	Rrs1	NCBI_Gene:59014,ENSEMBL:ENSMUSG00000061024	MGI:1929721	protein coding gene	ribosome biogenesis regulator 1
1	gene	9.547935	9.580673	positive	MGI_C57BL6J_1923437	Adhfe1	NCBI_Gene:76187,ENSEMBL:ENSMUSG00000025911	MGI:1923437	protein coding gene	alcohol dehydrogenase, iron containing, 1
1	gene	9.560832	9.631175	negative	MGI_C57BL6J_1919731	2610203C22Rik	NCBI_Gene:72481,ENSEMBL:ENSMUSG00000079671	MGI:1919731	lncRNA gene	RIKEN cDNA 2610203C22 gene
1	pseudogene	9.574536	9.575865	positive	MGI_C57BL6J_3644104	Gm6161	NCBI_Gene:620542,ENSEMBL:ENSMUSG00000081441	MGI:3644104	pseudogene	predicted gene 6161
1	gene	9.601199	9.627143	positive	MGI_C57BL6J_1924232	Vxn	NCBI_Gene:76982,ENSEMBL:ENSMUSG00000067879	MGI:1924232	protein coding gene	vexin
1	gene	9.639255	9.640582	negative	MGI_C57BL6J_5580226	Gm29520	ENSEMBL:ENSMUSG00000099827	MGI:5580226	lncRNA gene	predicted gene 29520
1	gene	9.667407	9.700439	negative	MGI_C57BL6J_99925	Mybl1	NCBI_Gene:17864,ENSEMBL:ENSMUSG00000025912	MGI:99925	protein coding gene	myeloblastosis oncogene-like 1
1	gene	9.718622	9.748382	negative	MGI_C57BL6J_1917925	Vcpip1	NCBI_Gene:70675,ENSEMBL:ENSMUSG00000045210	MGI:1917925	protein coding gene	valosin containing protein (p97)/p47 complex interacting protein 1
1	gene	9.747648	9.791924	positive	MGI_C57BL6J_1920581	1700034P13Rik	NCBI_Gene:73331,ENSEMBL:ENSMUSG00000097893	MGI:1920581	lncRNA gene	RIKEN cDNA 1700034P13 gene
1	gene	9.775558	9.791319	positive	MGI_C57BL6J_5622475	Gm39590	NCBI_Gene:105243859	MGI:5622475	lncRNA gene	predicted gene, 39590
1	gene	9.798107	9.902570	positive	MGI_C57BL6J_2182368	Sgk3	NCBI_Gene:170755,ENSEMBL:ENSMUSG00000025915	MGI:2182368	protein coding gene	serum/glucocorticoid regulated kinase 3
1	pseudogene	9.802163	9.802665	negative	MGI_C57BL6J_3647661	Gm6195	NCBI_Gene:108167613,ENSEMBL:ENSMUSG00000046334	MGI:3647661	pseudogene	predicted pseudogene 6195
1	gene	9.834498	9.834602	negative	MGI_C57BL6J_5452384	Gm22607	ENSEMBL:ENSMUSG00000088916	MGI:5452384	snRNA gene	predicted gene, 22607
1	pseudogene	9.901944	9.902558	positive	MGI_C57BL6J_3829209	Gm2352	NCBI_Gene:100039643	MGI:3829209	pseudogene	predicted gene 2352
1	gene	9.906157	9.942166	positive	MGI_C57BL6J_3045334	Mcmdc2	NCBI_Gene:240697,ENSEMBL:ENSMUSG00000046101	MGI:3045334	protein coding gene	minichromosome maintenance domain containing 2
1	gene	9.941959	9.944118	negative	MGI_C57BL6J_1921074	Snhg6	NCBI_Gene:73824,ENSEMBL:ENSMUSG00000098234	MGI:1921074	lncRNA gene	small nucleolar RNA host gene 6
1	gene	9.942463	9.942549	negative	MGI_C57BL6J_2387894	Snord87	NCBI_Gene:266793,ENSEMBL:ENSMUSG00000093178	MGI:2387894	snoRNA gene	small nucleolar RNA, C/D box 87
1	gene	9.960163	9.968207	negative	MGI_C57BL6J_3780500	Tcf24	NCBI_Gene:100039596,ENSEMBL:ENSMUSG00000099032	MGI:3780500	protein coding gene	transcription factor 24
1	gene	9.967314	9.968687	positive	MGI_C57BL6J_3649088	E330040D14Rik	ENSEMBL:ENSMUSG00000104025	MGI:3649088	unclassified gene	RIKEN cDNA E330040D14 gene
1	gene	9.968622	10.013541	negative	MGI_C57BL6J_1921138	Ppp1r42	NCBI_Gene:69312,ENSEMBL:ENSMUSG00000025916	MGI:1921138	protein coding gene	protein phosphatase 1, regulatory subunit 42
1	gene	9.982387	9.992366	positive	MGI_C57BL6J_3801960	Gm15818	ENSEMBL:ENSMUSG00000087199	MGI:3801960	lncRNA gene	predicted gene 15818
1	gene	10.009814	10.009917	negative	MGI_C57BL6J_5454451	Gm24674	ENSEMBL:ENSMUSG00000095780	MGI:5454451	snRNA gene	predicted gene, 24674
1	gene	10.024600	10.038168	negative	MGI_C57BL6J_1349415	Cops5	NCBI_Gene:26754,ENSEMBL:ENSMUSG00000025917	MGI:1349415	protein coding gene	COP9 signalosome subunit 5
1	gene	10.037987	10.136771	positive	MGI_C57BL6J_2681832	Cspp1	NCBI_Gene:211660,ENSEMBL:ENSMUSG00000056763	MGI:2681832	protein coding gene	centrosome and spindle pole associated protein 1
1	gene	10.057025	10.057944	negative	MGI_C57BL6J_1923853	1700047N06Rik	ENSEMBL:ENSMUSG00000102356	MGI:1923853	unclassified gene	RIKEN cDNA 1700047N06 gene
1	gene	10.137507	10.232670	negative	MGI_C57BL6J_2442988	Arfgef1	NCBI_Gene:211673,ENSEMBL:ENSMUSG00000067851	MGI:2442988	protein coding gene	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
1	gene	10.166539	10.166778	positive	MGI_C57BL6J_5456125	Gm26348	ENSEMBL:ENSMUSG00000088153	MGI:5456125	unclassified non-coding RNA gene	predicted gene, 26348
1	gene	10.197081	10.198802	negative	MGI_C57BL6J_5610797	Gm37569	ENSEMBL:ENSMUSG00000102556	MGI:5610797	unclassified gene	predicted gene, 37569
1	gene	10.295791	10.720061	negative	MGI_C57BL6J_3045348	Cpa6	NCBI_Gene:329093,ENSEMBL:ENSMUSG00000042501	MGI:3045348	protein coding gene	carboxypeptidase A6
1	gene	10.449245	10.451989	negative	MGI_C57BL6J_5611233	Gm38005	ENSEMBL:ENSMUSG00000103810	MGI:5611233	unclassified gene	predicted gene, 38005
1	pseudogene	10.554007	10.555553	negative	MGI_C57BL6J_3783051	Gm15604	NCBI_Gene:100416202,ENSEMBL:ENSMUSG00000083422	MGI:3783051	pseudogene	predicted gene 15604
1	gene	10.555554	10.555660	negative	MGI_C57BL6J_5455030	Gm25253	ENSEMBL:ENSMUSG00000094979	MGI:5455030	snRNA gene	predicted gene, 25253
1	pseudogene	10.694415	10.695614	positive	MGI_C57BL6J_3783050	Gm15603	NCBI_Gene:102636010,ENSEMBL:ENSMUSG00000081417	MGI:3783050	pseudogene	predicted gene 15603
1	gene	10.782456	10.784377	negative	MGI_C57BL6J_5610361	Gm37133	ENSEMBL:ENSMUSG00000103448	MGI:5610361	unclassified gene	predicted gene, 37133
1	pseudogene	10.805281	10.806522	positive	MGI_C57BL6J_3649087	Gm5522	NCBI_Gene:433271,ENSEMBL:ENSMUSG00000100212	MGI:3649087	pseudogene	predicted gene 5522
1	pseudogene	10.868688	10.869446	positive	MGI_C57BL6J_5579365	Gm28659	ENSEMBL:ENSMUSG00000100648	MGI:5579365	pseudogene	predicted gene 28659
1	gene	10.921670	10.921760	positive	MGI_C57BL6J_5452740	Gm22963	ENSEMBL:ENSMUSG00000088585	MGI:5452740	snoRNA gene	predicted gene, 22963
1	gene	10.993272	11.303683	positive	MGI_C57BL6J_1923385	Prex2	NCBI_Gene:109294,ENSEMBL:ENSMUSG00000048960	MGI:1923385	protein coding gene	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
1	gene	11.134111	11.134238	negative	MGI_C57BL6J_5453950	Gm24173	ENSEMBL:ENSMUSG00000077318	MGI:5453950	snoRNA gene	predicted gene, 24173
1	pseudogene	11.223566	11.224174	negative	MGI_C57BL6J_5579392	Gm28686	ENSEMBL:ENSMUSG00000101827	MGI:5579392	pseudogene	predicted gene 28686
1	gene	11.363926	11.366964	negative	MGI_C57BL6J_5610638	Gm37410	ENSEMBL:ENSMUSG00000103494	MGI:5610638	unclassified gene	predicted gene, 37410
1	gene	11.413563	11.975902	positive	MGI_C57BL6J_2444149	A830018L16Rik	NCBI_Gene:320492,ENSEMBL:ENSMUSG00000057715	MGI:2444149	protein coding gene	RIKEN cDNA A830018L16 gene
1	gene	11.416918	11.419388	positive	MGI_C57BL6J_5611406	Gm38178	ENSEMBL:ENSMUSG00000103825	MGI:5611406	unclassified gene	predicted gene, 38178
1	pseudogene	11.608139	11.608400	negative	MGI_C57BL6J_5579979	Gm29273	ENSEMBL:ENSMUSG00000099845	MGI:5579979	pseudogene	predicted gene 29273
1	gene	11.704207	11.706350	positive	MGI_C57BL6J_5611297	Gm38069	ENSEMBL:ENSMUSG00000103561	MGI:5611297	unclassified gene	predicted gene, 38069
1	gene	11.979540	11.991123	positive	MGI_C57BL6J_5590057	Gm30898	NCBI_Gene:102632954	MGI:5590057	lncRNA gene	predicted gene, 30898
1	gene	12.029084	12.061033	negative	MGI_C57BL6J_5590133	Gm30974	NCBI_Gene:102633057	MGI:5590133	lncRNA gene	predicted gene, 30974
1	pseudogene	12.120939	12.122032	positive	MGI_C57BL6J_3648484	Gm7560	NCBI_Gene:665262,ENSEMBL:ENSMUSG00000101610	MGI:3648484	pseudogene	predicted gene 7560
1	gene	12.374936	12.375042	positive	MGI_C57BL6J_5452410	Gm22633	ENSEMBL:ENSMUSG00000093864	MGI:5452410	snRNA gene	predicted gene, 22633
1	gene	12.423687	12.432474	negative	MGI_C57BL6J_5622476	Gm39591	NCBI_Gene:105243860	MGI:5622476	lncRNA gene	predicted gene, 39591
1	gene	12.425986	12.426106	positive	MGI_C57BL6J_5530644	Mir6341	miRBase:MI0021869,NCBI_Gene:102465961,ENSEMBL:ENSMUSG00000098555	MGI:5530644	miRNA gene	microRNA 6341
1	pseudogene	12.565560	12.566590	positive	MGI_C57BL6J_3780551	Gm2383	NCBI_Gene:100039709,ENSEMBL:ENSMUSG00000097628	MGI:3780551	pseudogene	predicted gene 2383
1	pseudogene	12.655843	12.656744	positive	MGI_C57BL6J_3647030	Gm6216	NCBI_Gene:621353,ENSEMBL:ENSMUSG00000098163	MGI:3647030	pseudogene	predicted gene 6216
1	gene	12.667563	12.673090	positive	MGI_C57BL6J_4937278	Gm17644	NCBI_Gene:329096,ENSEMBL:ENSMUSG00000097171	MGI:4937278	lncRNA gene	predicted gene, 17644
1	gene	12.670324	12.671176	negative	MGI_C57BL6J_5580369	Gm29663	ENSEMBL:ENSMUSG00000101314	MGI:5580369	lncRNA gene	predicted gene 29663
1	gene	12.692262	12.861192	positive	MGI_C57BL6J_2138563	Sulf1	NCBI_Gene:240725,ENSEMBL:ENSMUSG00000016918	MGI:2138563	protein coding gene	sulfatase 1
1	gene	12.866549	12.993063	negative	MGI_C57BL6J_2443431	Slco5a1	NCBI_Gene:240726,ENSEMBL:ENSMUSG00000025938	MGI:2443431	protein coding gene	solute carrier organic anion transporter family, member 5A1
1	gene	13.059401	13.059951	negative	MGI_C57BL6J_5610390	Gm37162	ENSEMBL:ENSMUSG00000104518	MGI:5610390	unclassified gene	predicted gene, 37162
1	pseudogene	13.061922	13.062537	positive	MGI_C57BL6J_3647667	Gm5250	NCBI_Gene:383490,ENSEMBL:ENSMUSG00000069620	MGI:3647667	pseudogene	predicted gene 5250
1	gene	13.068838	13.078662	positive	MGI_C57BL6J_5579989	Gm29283	ENSEMBL:ENSMUSG00000099498	MGI:5579989	lncRNA gene	predicted gene 29283
1	gene	13.090688	13.104959	negative	MGI_C57BL6J_5622477	Gm39592	NCBI_Gene:105243861	MGI:5622477	lncRNA gene	predicted gene, 39592
1	gene	13.113428	13.127163	negative	MGI_C57BL6J_3588194	Prdm14	NCBI_Gene:383491,ENSEMBL:ENSMUSG00000042414	MGI:3588194	protein coding gene	PR domain containing 14
1	gene	13.139105	13.374083	negative	MGI_C57BL6J_1276533	Ncoa2	NCBI_Gene:17978,ENSEMBL:ENSMUSG00000005886	MGI:1276533	protein coding gene	nuclear receptor coactivator 2
1	gene	13.145301	13.146630	negative	MGI_C57BL6J_1917334	2300004M11Rik	NA	NA	unclassified gene	RIKEN cDNA 2300004M11 gene
1	gene	13.177462	13.179714	negative	MGI_C57BL6J_5611604	Gm38376	ENSEMBL:ENSMUSG00000103506	MGI:5611604	unclassified gene	predicted gene, 38376
1	gene	13.234809	13.236434	negative	MGI_C57BL6J_5610637	Gm37409	ENSEMBL:ENSMUSG00000103495	MGI:5610637	unclassified gene	predicted gene, 37409
1	gene	13.262198	13.262279	positive	MGI_C57BL6J_5531263	Gm27881	ENSEMBL:ENSMUSG00000099183	MGI:5531263	miRNA gene	predicted gene, 27881
1	gene	13.289812	13.290506	negative	MGI_C57BL6J_5611451	Gm38223	ENSEMBL:ENSMUSG00000102639	MGI:5611451	unclassified gene	predicted gene, 38223
1	gene	13.297036	13.298907	negative	MGI_C57BL6J_5610930	Gm37702	ENSEMBL:ENSMUSG00000104170	MGI:5610930	unclassified gene	predicted gene, 37702
1	gene	13.334498	13.334609	negative	MGI_C57BL6J_5452946	Gm23169	ENSEMBL:ENSMUSG00000087782	MGI:5452946	snRNA gene	predicted gene, 23169
1	gene	13.343563	13.348204	negative	MGI_C57BL6J_5611348	Gm38120	ENSEMBL:ENSMUSG00000103085	MGI:5611348	unclassified gene	predicted gene, 38120
1	gene	13.354483	13.356730	negative	MGI_C57BL6J_5611608	Gm38380	ENSEMBL:ENSMUSG00000102664	MGI:5611608	unclassified gene	predicted gene, 38380
1	gene	13.376070	13.388413	positive	MGI_C57BL6J_5580276	Gm29570	ENSEMBL:ENSMUSG00000101476	MGI:5580276	lncRNA gene	predicted gene 29570
1	gene	13.392554	13.422408	negative	MGI_C57BL6J_5622480	Gm39595	NCBI_Gene:105243864	MGI:5622480	lncRNA gene	predicted gene, 39595
1	pseudogene	13.407010	13.407655	negative	MGI_C57BL6J_3647262	Gm7593	NCBI_Gene:665341,ENSEMBL:ENSMUSG00000101171	MGI:3647262	pseudogene	predicted gene 7593
1	pseudogene	13.436514	13.436800	positive	MGI_C57BL6J_5622485	Gm39600	NCBI_Gene:105243872	MGI:5622485	pseudogene	predicted gene, 39600
1	gene	13.564693	13.589910	negative	MGI_C57BL6J_1919515	Tram1	NCBI_Gene:72265,ENSEMBL:ENSMUSG00000025935	MGI:1919515	protein coding gene	translocating chain-associating membrane protein 1
1	gene	13.623330	13.660605	negative	MGI_C57BL6J_2442551	Lactb2	NCBI_Gene:212442,ENSEMBL:ENSMUSG00000025937	MGI:2442551	protein coding gene	lactamase, beta 2
1	gene	13.641483	13.642748	negative	MGI_C57BL6J_5611547	Gm38319	ENSEMBL:ENSMUSG00000102982	MGI:5611547	unclassified gene	predicted gene, 38319
1	gene	13.668738	13.702230	positive	MGI_C57BL6J_2686466	Xkr9	NCBI_Gene:381246,ENSEMBL:ENSMUSG00000067813	MGI:2686466	protein coding gene	X-linked Kx blood group related 9
1	gene	13.774334	13.774464	negative	MGI_C57BL6J_5456050	Gm26273	ENSEMBL:ENSMUSG00000077368	MGI:5456050	snoRNA gene	predicted gene, 26273
1	pseudogene	13.774628	13.775938	negative	MGI_C57BL6J_3780619	Gm2452	NCBI_Gene:100039843	MGI:3780619	pseudogene	predicted gene 2452
1	pseudogene	13.785685	13.786929	negative	MGI_C57BL6J_3649089	Gm5523	NCBI_Gene:433273,ENSEMBL:ENSMUSG00000097711	MGI:3649089	pseudogene	predicted pseudogene 5523
1	gene	13.846500	13.881933	positive	MGI_C57BL6J_5590354	Gm31195	NCBI_Gene:102633349	MGI:5590354	lncRNA gene	predicted gene, 31195
1	gene	13.846871	13.849119	negative	MGI_C57BL6J_5610175	Gm36947	ENSEMBL:ENSMUSG00000102166	MGI:5610175	unclassified gene	predicted gene, 36947
1	pseudogene	13.916903	13.917754	positive	MGI_C57BL6J_5011307	Gm19122	NCBI_Gene:100418294	MGI:5011307	pseudogene	predicted gene, 19122
1	gene	13.932378	13.932685	positive	MGI_C57BL6J_5455268	Gm25491	ENSEMBL:ENSMUSG00000089358	MGI:5455268	unclassified non-coding RNA gene	predicted gene, 25491
1	gene	14.042254	14.141388	positive	MGI_C57BL6J_5622481	Gm39596	NCBI_Gene:105243865	MGI:5622481	lncRNA gene	predicted gene, 39596
1	gene	14.109215	14.112819	negative	MGI_C57BL6J_5610628	Gm37400	ENSEMBL:ENSMUSG00000104209	MGI:5610628	unclassified gene	predicted gene, 37400
1	gene	14.168953	14.310267	negative	MGI_C57BL6J_109344	Eya1	NCBI_Gene:14048,ENSEMBL:ENSMUSG00000025932	MGI:109344	protein coding gene	EYA transcriptional coactivator and phosphatase 1
1	gene	14.182578	14.182677	positive	MGI_C57BL6J_5452393	Gm22616	ENSEMBL:ENSMUSG00000095853	MGI:5452393	miRNA gene	predicted gene, 22616
1	gene	14.255552	14.255990	negative	MGI_C57BL6J_5610672	Gm37444	ENSEMBL:ENSMUSG00000102588	MGI:5610672	unclassified gene	predicted gene, 37444
1	pseudogene	14.550433	14.551087	positive	MGI_C57BL6J_3644738	Gm7617	NCBI_Gene:665391	MGI:3644738	pseudogene	predicted gene 7617
1	gene	14.752937	14.780974	positive	MGI_C57BL6J_3642739	Gm9947	NCBI_Gene:105243866,ENSEMBL:ENSMUSG00000054493	MGI:3642739	lncRNA gene	predicted gene 9947
1	gene	14.753344	14.756089	negative	MGI_C57BL6J_1333884	Msc	NCBI_Gene:17681,ENSEMBL:ENSMUSG00000025930	MGI:1333884	protein coding gene	musculin
1	gene	14.788645	14.792965	positive	MGI_C57BL6J_5610640	Gm37412	ENSEMBL:ENSMUSG00000103492	MGI:5610640	unclassified gene	predicted gene, 37412
1	pseudogene	14.839267	14.840273	negative	MGI_C57BL6J_2149598	Smt3h2-ps4	NCBI_Gene:114607,ENSEMBL:ENSMUSG00000081201	MGI:2149598	pseudogene	SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae)
1	pseudogene	14.865018	14.866019	positive	MGI_C57BL6J_3647110	Rpl5-ps1	NCBI_Gene:665407,ENSEMBL:ENSMUSG00000082193	MGI:3647110	pseudogene	ribosomal protein L5, pseudogene 1
1	pseudogene	14.869758	14.870038	positive	MGI_C57BL6J_5592659	Gm33500	NCBI_Gene:102636435	MGI:5592659	pseudogene	predicted gene, 33500
1	gene	14.872648	14.919014	negative	MGI_C57BL6J_3522699	Trpa1	NCBI_Gene:277328,ENSEMBL:ENSMUSG00000032769	MGI:3522699	protein coding gene	transient receptor potential cation channel, subfamily A, member 1
1	gene	15.019040	15.019159	negative	MGI_C57BL6J_5456122	Gm26345	ENSEMBL:ENSMUSG00000088159	MGI:5456122	snoRNA gene	predicted gene, 26345
1	pseudogene	15.067032	15.067558	positive	MGI_C57BL6J_3642999	Gm5048	NCBI_Gene:269105	MGI:3642999	pseudogene	predicted gene 5048
1	pseudogene	15.201959	15.205406	positive	MGI_C57BL6J_5012102	Gm19917	NCBI_Gene:100503835	MGI:5012102	pseudogene	predicted gene, 19917
1	pseudogene	15.268604	15.269815	negative	MGI_C57BL6J_3642220	Gm10566	NCBI_Gene:100039959,ENSEMBL:ENSMUSG00000073737	MGI:3642220	pseudogene	predicted gene 10566
1	gene	15.287157	15.723751	positive	MGI_C57BL6J_99632	Kcnb2	NCBI_Gene:98741,ENSEMBL:ENSMUSG00000092083	MGI:99632	protein coding gene	potassium voltage gated channel, Shab-related subfamily, member 2
1	gene	15.364302	15.365834	positive	MGI_C57BL6J_5611344	Gm38116	ENSEMBL:ENSMUSG00000102937	MGI:5611344	unclassified gene	predicted gene, 38116
1	gene	15.556249	15.558337	positive	MGI_C57BL6J_5610366	Gm37138	ENSEMBL:ENSMUSG00000104149	MGI:5610366	unclassified gene	predicted gene, 37138
1	gene	15.570583	15.571242	positive	MGI_C57BL6J_1924619	9430087D07Rik	NA	NA	unclassified gene	RIKEN cDNA 9430087D07 gene
1	gene	15.685935	15.686046	negative	MGI_C57BL6J_5455004	Gm25227	ENSEMBL:ENSMUSG00000088829	MGI:5455004	snoRNA gene	predicted gene, 25227
1	gene	15.757832	15.757963	positive	MGI_C57BL6J_5454945	Gm25168	ENSEMBL:ENSMUSG00000077377	MGI:5454945	snoRNA gene	predicted gene, 25168
1	pseudogene	15.759930	15.760680	negative	MGI_C57BL6J_3648622	Gm6060	NCBI_Gene:606528,ENSEMBL:ENSMUSG00000101652	MGI:3648622	pseudogene	predicted gene 6060
1	pseudogene	15.760761	15.760860	positive	MGI_C57BL6J_5579375	Gm28669	ENSEMBL:ENSMUSG00000100814	MGI:5579375	pseudogene	predicted gene 28669
1	gene	15.804982	15.844052	positive	MGI_C57BL6J_109634	Terf1	NCBI_Gene:21749,ENSEMBL:ENSMUSG00000025925	MGI:109634	protein coding gene	telomeric repeat binding factor 1
1	gene	15.853331	15.856499	positive	MGI_C57BL6J_5610737	Gm37509	ENSEMBL:ENSMUSG00000104379	MGI:5610737	unclassified gene	predicted gene, 37509
1	gene	15.853862	15.892722	negative	MGI_C57BL6J_2684952	Sbspon	NCBI_Gene:226866,ENSEMBL:ENSMUSG00000032719	MGI:2684952	protein coding gene	somatomedin B and thrombospondin, type 1 domain containing
1	gene	15.879530	15.879832	positive	MGI_C57BL6J_5453036	Gm23259	ENSEMBL:ENSMUSG00000088943	MGI:5453036	unclassified non-coding RNA gene	predicted gene, 23259
1	gene	15.905205	15.907764	positive	MGI_C57BL6J_5590682	Gm31523	NCBI_Gene:102633776	MGI:5590682	lncRNA gene	predicted gene, 31523
1	pseudogene	16.053335	16.053906	positive	MGI_C57BL6J_3644198	Gm7634	NCBI_Gene:665434,ENSEMBL:ENSMUSG00000100652	MGI:3644198	pseudogene	predicted gene 7634
1	gene	16.065974	16.093344	negative	MGI_C57BL6J_1923049	4930444P10Rik	NCBI_Gene:75799,ENSEMBL:ENSMUSG00000067795	MGI:1923049	protein coding gene	RIKEN cDNA 4930444P10 gene
1	gene	16.101295	16.104662	negative	MGI_C57BL6J_98073	Rpl7	NCBI_Gene:19989,ENSEMBL:ENSMUSG00000043716	MGI:98073	protein coding gene	ribosomal protein L7
1	gene	16.105774	16.133734	positive	MGI_C57BL6J_1924238	Rdh10	NCBI_Gene:98711,ENSEMBL:ENSMUSG00000025921	MGI:1924238	protein coding gene	retinol dehydrogenase 10 (all-trans)
1	gene	16.208197	16.210517	negative	MGI_C57BL6J_5611477	Gm38249	ENSEMBL:ENSMUSG00000104165	MGI:5611477	unclassified gene	predicted gene, 38249
1	gene	16.228506	16.244062	positive	MGI_C57BL6J_5578801	Gm28095	ENSEMBL:ENSMUSG00000100868	MGI:5578801	lncRNA gene	predicted gene 28095
1	gene	16.228674	16.520182	negative	MGI_C57BL6J_1352508	Stau2	NCBI_Gene:29819,ENSEMBL:ENSMUSG00000025920	MGI:1352508	protein coding gene	staufen double-stranded RNA binding protein 2
1	gene	16.253587	16.267921	positive	MGI_C57BL6J_3649156	Gm7568	NCBI_Gene:102634042,ENSEMBL:ENSMUSG00000089982	MGI:3649156	lncRNA gene	predicted gene 7568
1	gene	16.309438	16.311723	negative	MGI_C57BL6J_3028048	C130013N14Rik	NA	NA	unclassified gene	RIKEN cDNA C130013N14 gene
1	gene	16.540788	16.619489	negative	MGI_C57BL6J_1914049	Ube2w	NCBI_Gene:66799,ENSEMBL:ENSMUSG00000025939	MGI:1914049	protein coding gene	ubiquitin-conjugating enzyme E2W (putative)
1	gene	16.591021	16.596309	negative	MGI_C57BL6J_5825721	Gm46084	NCBI_Gene:108167614	MGI:5825721	protein coding gene	predicted gene, 46084
1	gene	16.604594	16.604936	negative	MGI_C57BL6J_1925631	2310047N11Rik	NA	NA	unclassified gene	RIKEN cDNA 2310047N11 gene
1	gene	16.618560	16.621539	positive	MGI_C57BL6J_5611570	Gm38342	ENSEMBL:ENSMUSG00000102457	MGI:5611570	unclassified gene	predicted gene, 38342
1	gene	16.641725	16.657119	negative	MGI_C57BL6J_1915173	Eloc	NCBI_Gene:67923,ENSEMBL:ENSMUSG00000079658	MGI:1915173	protein coding gene	elongin C
1	gene	16.657552	16.662278	positive	MGI_C57BL6J_4437728	D030040B21Rik	NCBI_Gene:329101,ENSEMBL:ENSMUSG00000097744	MGI:4437728	lncRNA gene	RIKEN cDNA D030040B21 gene
1	pseudogene	16.662385	16.663714	negative	MGI_C57BL6J_3648037	Gm7654	NCBI_Gene:665480,ENSEMBL:ENSMUSG00000100959	MGI:3648037	pseudogene	predicted gene 7654
1	gene	16.665191	16.678275	positive	MGI_C57BL6J_1915068	Tmem70	NCBI_Gene:70397,ENSEMBL:ENSMUSG00000025940	MGI:1915068	protein coding gene	transmembrane protein 70
1	gene	16.688051	16.709611	positive	MGI_C57BL6J_1341909	Ly96	NCBI_Gene:17087,ENSEMBL:ENSMUSG00000025779	MGI:1341909	protein coding gene	lymphocyte antigen 96
1	pseudogene	16.758205	16.758623	negative	MGI_C57BL6J_5580355	Gm29649	ENSEMBL:ENSMUSG00000100093	MGI:5580355	pseudogene	predicted gene 29649
1	pseudogene	16.768279	16.770138	negative	MGI_C57BL6J_3644176	Gm5828	NCBI_Gene:545306,ENSEMBL:ENSMUSG00000091020	MGI:3644176	pseudogene	predicted gene 5828
1	gene	16.898185	17.091631	positive	MGI_C57BL6J_5579082	Gm28376	ENSEMBL:ENSMUSG00000101640	MGI:5579082	lncRNA gene	predicted gene 28376
1	gene	16.930970	16.931796	positive	MGI_C57BL6J_1918145	4921511E07Rik	ENSEMBL:ENSMUSG00000104133	MGI:1918145	unclassified gene	RIKEN cDNA 4921511E07 gene
1	gene	16.942104	17.097904	negative	MGI_C57BL6J_1891495	Jph1	NCBI_Gene:57339,ENSEMBL:ENSMUSG00000042686	MGI:1891495	protein coding gene	junctophilin 1
1	gene	17.097969	17.100793	positive	MGI_C57BL6J_5825722	Gm46085	NCBI_Gene:108167615	MGI:5825722	lncRNA gene	predicted gene, 46085
1	gene	17.098573	17.124568	negative	MGI_C57BL6J_5591141	Gm31982	NCBI_Gene:102634387	MGI:5591141	lncRNA gene	predicted gene, 31982
1	gene	17.120597	17.128971	positive	MGI_C57BL6J_5579489	Gm28783	NCBI_Gene:102634310,ENSEMBL:ENSMUSG00000100110	MGI:5579489	lncRNA gene	predicted gene 28783
1	gene	17.145362	17.164271	positive	MGI_C57BL6J_1338002	Gdap1	NCBI_Gene:14545,ENSEMBL:ENSMUSG00000025777	MGI:1338002	protein coding gene	ganglioside-induced differentiation-associated-protein 1
1	gene	17.168402	17.173109	positive	MGI_C57BL6J_5579490	Gm28784	NCBI_Gene:102634541,ENSEMBL:ENSMUSG00000099899	MGI:5579490	lncRNA gene	predicted gene 28784
1	gene	17.202970	17.205577	positive	MGI_C57BL6J_5622482	Gm39597	NCBI_Gene:105243867	MGI:5622482	lncRNA gene	predicted gene, 39597
1	pseudogene	17.250114	17.250492	negative	MGI_C57BL6J_5579491	Gm28785	ENSEMBL:ENSMUSG00000100272	MGI:5579491	pseudogene	predicted gene 28785
1	pseudogene	17.394460	17.395525	positive	MGI_C57BL6J_3647666	Gm5251	NCBI_Gene:383495,ENSEMBL:ENSMUSG00000100398	MGI:3647666	pseudogene	predicted gene 5251
1	pseudogene	17.397290	17.401340	negative	MGI_C57BL6J_1889580	Rbm6-ps1	NCBI_Gene:108212,ENSEMBL:ENSMUSG00000101589	MGI:1889580	pseudogene	RNA binding motif protein 6, pseudogene 1
1	pseudogene	17.428841	17.429569	negative	MGI_C57BL6J_3648507	Gm6075	NCBI_Gene:606716,ENSEMBL:ENSMUSG00000102048	MGI:3648507	pseudogene	predicted gene 6075
1	gene	17.520001	17.520111	positive	MGI_C57BL6J_5454943	Gm25166	ENSEMBL:ENSMUSG00000089534	MGI:5454943	snoRNA gene	predicted gene, 25166
1	gene	17.601901	17.630939	positive	MGI_C57BL6J_1934659	Pi15	NCBI_Gene:94227,ENSEMBL:ENSMUSG00000067780	MGI:1934659	protein coding gene	peptidase inhibitor 15
1	gene	17.615084	17.641382	negative	MGI_C57BL6J_5578860	Gm28154	NCBI_Gene:102634738,ENSEMBL:ENSMUSG00000100053	MGI:5578860	lncRNA gene	predicted gene 28154
1	gene	17.676027	17.727646	negative	MGI_C57BL6J_3801761	Gm16070	NCBI_Gene:102634913,ENSEMBL:ENSMUSG00000085125	MGI:3801761	lncRNA gene	predicted gene 16070
1	gene	17.727029	17.767235	positive	MGI_C57BL6J_1934666	Crispld1	NCBI_Gene:83691,ENSEMBL:ENSMUSG00000025776	MGI:1934666	protein coding gene	cysteine-rich secretory protein LCCL domain containing 1
1	gene	17.741915	17.944776	negative	MGI_C57BL6J_5578859	Gm28153	NCBI_Gene:105243868,ENSEMBL:ENSMUSG00000099895	MGI:5578859	lncRNA gene	predicted gene 28153
1	pseudogene	17.947002	17.949647	positive	MGI_C57BL6J_3648169	Gm7690	NCBI_Gene:665564,ENSEMBL:ENSMUSG00000100554	MGI:3648169	pseudogene	predicted gene 7690
1	pseudogene	17.992961	17.999624	negative	MGI_C57BL6J_5010960	Gm18775	NCBI_Gene:100417711,ENSEMBL:ENSMUSG00000099473	MGI:5010960	pseudogene	predicted gene, 18775
1	pseudogene	17.993813	17.997483	positive	MGI_C57BL6J_5010154	Gm17969	NCBI_Gene:100416210,ENSEMBL:ENSMUSG00000099591	MGI:5010154	pseudogene	predicted gene, 17969
1	gene	17.994462	18.059056	negative	MGI_C57BL6J_5579462	Gm28756	ENSEMBL:ENSMUSG00000109887	MGI:5579462	lncRNA gene	predicted gene 28756
1	pseudogene	18.005961	18.016186	negative	MGI_C57BL6J_5579461	Gm28755	ENSEMBL:ENSMUSG00000102001	MGI:5579461	pseudogene	predicted gene 28755
1	pseudogene	18.048100	18.058269	negative	MGI_C57BL6J_5804899	Gm45784	ENSEMBL:ENSMUSG00000101717	MGI:5804899	pseudogene	predicted gene 45784
1	gene	18.114884	18.145966	negative	MGI_C57BL6J_1925331	Crisp4	NCBI_Gene:78081,ENSEMBL:ENSMUSG00000025774	MGI:1925331	protein coding gene	cysteine-rich secretory protein 4
1	pseudogene	18.210053	18.223564	negative	MGI_C57BL6J_3646526	Defb44-ps	NCBI_Gene:654454,ENSEMBL:ENSMUSG00000070977	MGI:3646526	pseudogene	defensin beta 44, pseudogene
1	gene	18.236473	18.237443	negative	MGI_C57BL6J_3648148	Defb18	NCBI_Gene:654460,ENSEMBL:ENSMUSG00000073735	MGI:3648148	protein coding gene	defensin beta 18
1	gene	18.250978	18.265138	negative	MGI_C57BL6J_1924923	Defb41	NCBI_Gene:77673,ENSEMBL:ENSMUSG00000067773	MGI:1924923	protein coding gene	defensin beta 41
1	pseudogene	18.262395	18.263379	negative	MGI_C57BL6J_5010022	Gm17837	NCBI_Gene:100415956,ENSEMBL:ENSMUSG00000101685	MGI:5010022	pseudogene	predicted gene, 17837
1	pseudogene	18.708428	18.709338	positive	MGI_C57BL6J_3647664	Gm5252	NCBI_Gene:383499,ENSEMBL:ENSMUSG00000101306	MGI:3647664	pseudogene	predicted gene 5252
1	gene	18.969762	18.969833	negative	MGI_C57BL6J_5453852	Gm24075	ENSEMBL:ENSMUSG00000088800	MGI:5453852	snoRNA gene	predicted gene, 24075
1	pseudogene	19.037266	19.037505	positive	MGI_C57BL6J_5579049	Gm28343	NCBI_Gene:108167808,ENSEMBL:ENSMUSG00000101644	MGI:5579049	pseudogene	predicted gene 28343
1	pseudogene	19.062857	19.063135	positive	MGI_C57BL6J_5579050	Gm28344	ENSEMBL:ENSMUSG00000099433	MGI:5579050	pseudogene	predicted gene 28344
1	gene	19.063300	19.104840	negative	MGI_C57BL6J_3801887	Gm15825	NCBI_Gene:102635013,ENSEMBL:ENSMUSG00000089787	MGI:3801887	lncRNA gene	predicted gene 15825
1	gene	19.103022	19.168592	positive	MGI_C57BL6J_2153466	Tfap2d	NCBI_Gene:226896,ENSEMBL:ENSMUSG00000042596	MGI:2153466	protein coding gene	transcription factor AP-2, delta
1	pseudogene	19.153422	19.153966	negative	MGI_C57BL6J_3710521	Gm10075	ENSEMBL:ENSMUSG00000100720	MGI:3710521	pseudogene	predicted gene 10075
1	gene	19.208914	19.238845	positive	MGI_C57BL6J_104672	Tfap2b	NCBI_Gene:21419,ENSEMBL:ENSMUSG00000025927	MGI:104672	protein coding gene	transcription factor AP-2 beta
1	gene	19.242725	19.243769	positive	MGI_C57BL6J_5579046	Gm28340	ENSEMBL:ENSMUSG00000100538	MGI:5579046	lncRNA gene	predicted gene 28340
1	pseudogene	19.320181	19.320719	negative	MGI_C57BL6J_5579047	Gm28341	NCBI_Gene:108167596,ENSEMBL:ENSMUSG00000101117	MGI:5579047	pseudogene	predicted gene 28341
1	pseudogene	19.330939	19.333675	positive	MGI_C57BL6J_3645366	Gm4849	NCBI_Gene:226901,ENSEMBL:ENSMUSG00000100204	MGI:3645366	pseudogene	predicted gene 4849
1	gene	19.513855	19.513919	negative	MGI_C57BL6J_5454410	Gm24633	ENSEMBL:ENSMUSG00000084668	MGI:5454410	snoRNA gene	predicted gene, 24633
1	gene	19.606089	19.636734	positive	MGI_C57BL6J_5591810	Gm32651	NCBI_Gene:102635266	MGI:5591810	lncRNA gene	predicted gene, 32651
1	gene	19.614269	19.616767	positive	MGI_C57BL6J_5611610	Gm38382	ENSEMBL:ENSMUSG00000102597	MGI:5611610	unclassified gene	predicted gene, 38382
1	gene	20.057779	20.618082	negative	MGI_C57BL6J_2155808	Pkhd1	NCBI_Gene:241035,ENSEMBL:ENSMUSG00000043760	MGI:2155808	protein coding gene	polycystic kidney and hepatic disease 1
1	gene	20.062070	20.065548	negative	MGI_C57BL6J_5610543	Gm37315	ENSEMBL:ENSMUSG00000104095	MGI:5610543	unclassified gene	predicted gene, 37315
1	gene	20.356452	20.392300	positive	MGI_C57BL6J_1922278	4930486I03Rik	NCBI_Gene:75028,ENSEMBL:ENSMUSG00000089914	MGI:1922278	lncRNA gene	RIKEN cDNA 4930486I03 gene
1	pseudogene	20.444258	20.444810	negative	MGI_C57BL6J_3802035	Gm15795	ENSEMBL:ENSMUSG00000090142	MGI:3802035	pseudogene	predicted gene 15795
1	gene	20.444811	20.444912	negative	MGI_C57BL6J_5453939	Gm24162	ENSEMBL:ENSMUSG00000070175	MGI:5453939	snRNA gene	predicted gene, 24162
1	gene	20.669882	20.682958	positive	MGI_C57BL6J_5818206	Lincmd1	NCBI_Gene:105661730	MGI:5818206	lncRNA gene	long intergenic non-protein coding RNA of muscle differentiation 1
1	gene	20.669882	20.684298	positive	MGI_C57BL6J_5579359	Gm28653	ENSEMBL:ENSMUSG00000099906	MGI:5579359	lncRNA gene	predicted gene 28653
1	gene	20.679010	20.679082	positive	MGI_C57BL6J_2676881	Mir206	miRBase:MI0000249,NCBI_Gene:387202,ENSEMBL:ENSMUSG00000065559	MGI:2676881	miRNA gene	microRNA 206
1	gene	20.682769	20.682887	positive	MGI_C57BL6J_3618720	Mir133b	miRBase:MI0000821,NCBI_Gene:723817,ENSEMBL:ENSMUSG00000065480	MGI:3618720	miRNA gene	microRNA 133b
1	gene	20.714277	20.714743	positive	MGI_C57BL6J_1920847	1700113H21Rik	NA	NA	unclassified gene	RIKEN cDNA 1700113H21 gene
1	gene	20.730905	20.734496	positive	MGI_C57BL6J_107364	Il17a	NCBI_Gene:16171,ENSEMBL:ENSMUSG00000025929	MGI:107364	protein coding gene	interleukin 17A
1	gene	20.777146	20.790617	negative	MGI_C57BL6J_2676631	Il17f	NCBI_Gene:257630,ENSEMBL:ENSMUSG00000041872	MGI:2676631	protein coding gene	interleukin 17F
1	gene	20.802968	20.820312	negative	MGI_C57BL6J_101845	Mcm3	NCBI_Gene:17215,ENSEMBL:ENSMUSG00000041859	MGI:101845	protein coding gene	minichromosome maintenance complex component 3
1	pseudogene	20.821331	20.822516	positive	MGI_C57BL6J_5295693	Gm20587	NCBI_Gene:100417924,ENSEMBL:ENSMUSG00000099714	MGI:5295693	pseudogene	predicted gene, 20587
1	gene	20.836661	20.839689	positive	MGI_C57BL6J_5578771	Gm28065	ENSEMBL:ENSMUSG00000102121	MGI:5578771	lncRNA gene	predicted gene 28065
1	gene	20.842535	20.842666	negative	MGI_C57BL6J_5454500	Gm24723	ENSEMBL:ENSMUSG00000088858	MGI:5454500	snoRNA gene	predicted gene, 24723
1	gene	20.888650	20.890473	negative	MGI_C57BL6J_1924991	6720483E21Rik	NCBI_Gene:77741,ENSEMBL:ENSMUSG00000097934	MGI:1924991	lncRNA gene	RIKEN cDNA 6720483E21 gene
1	gene	20.890606	20.939650	positive	MGI_C57BL6J_1921479	Paqr8	NCBI_Gene:74229,ENSEMBL:ENSMUSG00000025931	MGI:1921479	protein coding gene	progestin and adipoQ receptor family member VIII
1	gene	20.915410	20.915540	negative	MGI_C57BL6J_5453948	Gm24171	ENSEMBL:ENSMUSG00000077314	MGI:5453948	snoRNA gene	predicted gene, 24171
1	pseudogene	20.945711	20.946914	positive	MGI_C57BL6J_5578770	Gm28064	ENSEMBL:ENSMUSG00000100929	MGI:5578770	pseudogene	predicted gene 28064
1	gene	20.951550	20.990841	positive	MGI_C57BL6J_1919127	Efhc1	NCBI_Gene:71877,ENSEMBL:ENSMUSG00000041809	MGI:1919127	protein coding gene	EF-hand domain (C-terminal) containing 1
1	gene	20.996299	21.079229	negative	MGI_C57BL6J_1924817	Tram2	NCBI_Gene:170829,ENSEMBL:ENSMUSG00000041779	MGI:1924817	protein coding gene	translocating chain-associating membrane protein 2
1	gene	21.080114	21.081748	positive	MGI_C57BL6J_5578993	Gm28287	ENSEMBL:ENSMUSG00000099971	MGI:5578993	lncRNA gene	predicted gene 28287
1	gene	21.166436	21.230167	positive	MGI_C57BL6J_1922962	Tmem14a	NCBI_Gene:75712,ENSEMBL:ENSMUSG00000025933	MGI:1922962	protein coding gene	transmembrane protein 14A
1	pseudogene	21.178988	21.187427	positive	MGI_C57BL6J_3780862	Gm2693	ENSEMBL:ENSMUSG00000100819	MGI:3780862	pseudogene	predicted gene 2693
1	gene	21.189046	21.195335	negative	MGI_C57BL6J_5592106	Gm32947	NCBI_Gene:102635667	MGI:5592106	lncRNA gene	predicted gene, 32947
1	gene	21.207234	21.271685	negative	MGI_C57BL6J_5579542	Gm28836	NCBI_Gene:102635593,ENSEMBL:ENSMUSG00000099343	MGI:5579542	lncRNA gene	predicted gene 28836
1	gene	21.234722	21.236821	positive	MGI_C57BL6J_5611452	Gm38224	ENSEMBL:ENSMUSG00000102633	MGI:5611452	unclassified gene	predicted gene, 38224
1	gene	21.240585	21.265661	positive	MGI_C57BL6J_95856	Gsta3	NCBI_Gene:14859,ENSEMBL:ENSMUSG00000025934	MGI:95856	protein coding gene	glutathione S-transferase, alpha 3
1	pseudogene	21.271799	21.273127	positive	MGI_C57BL6J_3648114	Gm7094	NCBI_Gene:101056100,ENSEMBL:ENSMUSG00000096375	MGI:3648114	pseudogene	predicted pseudogene 7094
1	pseudogene	21.285246	21.298312	negative	MGI_C57BL6J_3647976	Gm4956	NCBI_Gene:241041,ENSEMBL:ENSMUSG00000025936	MGI:3647976	pseudogene	predicted gene 4956
1	pseudogene	21.312516	21.341388	negative	MGI_C57BL6J_5434073	Gm21909	NCBI_Gene:101056161,ENSEMBL:ENSMUSG00000093963	MGI:5434073	pseudogene	predicted gene, 21909
1	gene	21.349641	21.352200	positive	MGI_C57BL6J_2676610	Khdc1a	NCBI_Gene:368204,ENSEMBL:ENSMUSG00000067750	MGI:2676610	protein coding gene	KH domain containing 1A
1	pseudogene	21.354005	21.355116	positive	MGI_C57BL6J_3840126	Gm16329	ENSEMBL:ENSMUSG00000086194	MGI:3840126	pseudogene	predicted gene 16329
1	pseudogene	21.364803	21.365030	positive	MGI_C57BL6J_3840125	Gm16327	ENSEMBL:ENSMUSG00000094436	MGI:3840125	pseudogene	predicted gene 16327
1	gene	21.368331	21.370845	positive	MGI_C57BL6J_3583007	Khdc1c	NCBI_Gene:433278,ENSEMBL:ENSMUSG00000041722	MGI:3583007	protein coding gene	KH domain containing 1C
1	gene	21.369788	21.381308	negative	MGI_C57BL6J_5592306	Gm33147	NCBI_Gene:102635938	MGI:5592306	lncRNA gene	predicted gene, 33147
1	pseudogene	21.372356	21.374170	positive	MGI_C57BL6J_3780878	Gm2709	NCBI_Gene:100040319,ENSEMBL:ENSMUSG00000085507	MGI:3780878	pseudogene	predicted gene 2709
1	pseudogene	21.379554	21.380419	positive	MGI_C57BL6J_4410373	Gm16533	NCBI_Gene:100379214,ENSEMBL:ENSMUSG00000094926	MGI:4410373	pseudogene	predited gene 16533
1	gene	21.383556	21.386384	positive	MGI_C57BL6J_2138477	Khdc1b	NCBI_Gene:98582,ENSEMBL:ENSMUSG00000085079	MGI:2138477	protein coding gene	KH domain containing 1B
1	pseudogene	21.390906	21.391101	positive	MGI_C57BL6J_3840127	Gm16328	ENSEMBL:ENSMUSG00000085679	MGI:3840127	pseudogene	predicted gene 16328
1	gene	21.398399	21.962650	negative	MGI_C57BL6J_1924937	Kcnq5	NCBI_Gene:226922,ENSEMBL:ENSMUSG00000028033	MGI:1924937	protein coding gene	potassium voltage-gated channel, subfamily Q, member 5
1	gene	21.454691	21.457017	negative	MGI_C57BL6J_5610177	Gm36949	ENSEMBL:ENSMUSG00000104138	MGI:5610177	unclassified gene	predicted gene, 36949
1	pseudogene	21.511867	21.513096	negative	MGI_C57BL6J_3648029	Gm7658	NCBI_Gene:665489,ENSEMBL:ENSMUSG00000082935	MGI:3648029	pseudogene	predicted gene 7658
1	gene	21.804147	21.806024	negative	MGI_C57BL6J_2442969	A630064C07Rik	NA	NA	unclassified gene	RIKEN cDNA A630064C07 gene
1	gene	21.838948	21.840514	negative	MGI_C57BL6J_5611471	Gm38243	ENSEMBL:ENSMUSG00000103748	MGI:5611471	unclassified gene	predicted gene, 38243
1	gene	21.952103	21.953458	negative	MGI_C57BL6J_1923344	5830474E16Rik	NA	NA	unclassified gene	RIKEN cDNA 5830474E16 gene
1	gene	21.959842	21.962530	positive	MGI_C57BL6J_5477074	Gm26580	ENSEMBL:ENSMUSG00000097109	MGI:5477074	lncRNA gene	predicted gene, 26580
1	pseudogene	22.030053	22.030615	negative	MGI_C57BL6J_3647717	Gm5696	NCBI_Gene:435612,ENSEMBL:ENSMUSG00000099692	MGI:3647717	pseudogene	predicted gene 5696
1	pseudogene	22.237849	22.238295	positive	MGI_C57BL6J_5578945	Gm28239	ENSEMBL:ENSMUSG00000100418	MGI:5578945	pseudogene	predicted gene 28239
1	gene	22.286251	22.805994	negative	MGI_C57BL6J_2152971	Rims1	NCBI_Gene:116837,ENSEMBL:ENSMUSG00000041670	MGI:2152971	protein coding gene	regulating synaptic membrane exocytosis 1
1	pseudogene	22.740764	22.741565	positive	MGI_C57BL6J_5477360	Gm26866	ENSEMBL:ENSMUSG00000097642	MGI:5477360	pseudogene	predicted gene, 26866
1	gene	22.898387	22.905081	positive	MGI_C57BL6J_3646486	Gm7759	NCBI_Gene:665725	MGI:3646486	unclassified gene	predicted gene 7759
1	pseudogene	22.984817	22.987125	negative	MGI_C57BL6J_3643583	Gm7761	NCBI_Gene:665731,ENSEMBL:ENSMUSG00000101468	MGI:3643583	pseudogene	predicted gene 7761
1	gene	23.048295	23.235673	negative	MGI_C57BL6J_5580212	Gm29506	NCBI_Gene:102632273,ENSEMBL:ENSMUSG00000101227	MGI:5580212	lncRNA gene	predicted gene 29506
1	gene	23.100473	23.102253	negative	MGI_C57BL6J_1914005	Ppp1r14bl	NCBI_Gene:66755,ENSEMBL:ENSMUSG00000073730	MGI:1914005	protein coding gene	protein phosphatase 1, regulatory inhibitor subunit 14B like
1	gene	23.123989	23.127725	positive	MGI_C57BL6J_5589601	Gm30442	NCBI_Gene:102632345	MGI:5589601	lncRNA gene	predicted gene, 30442
1	gene	23.245211	23.245331	positive	MGI_C57BL6J_5453953	Gm24176	ENSEMBL:ENSMUSG00000089553	MGI:5453953	snoRNA gene	predicted gene, 24176
1	gene	23.255685	23.256407	negative	MGI_C57BL6J_3644588	Gm6420	ENSEMBL:ENSMUSG00000102766	MGI:3644588	protein coding gene	predicted gene 6420
1	gene	23.272269	23.272339	positive	MGI_C57BL6J_2676907	Mir30a	miRBase:MI0000144,NCBI_Gene:387225,ENSEMBL:ENSMUSG00000065405	MGI:2676907	miRNA gene	microRNA 30a
1	gene	23.291537	23.291935	positive	MGI_C57BL6J_5504143	Gm27028	ENSEMBL:ENSMUSG00000097970	MGI:5504143	lncRNA gene	predicted gene, 27028
1	gene	23.291701	23.291784	positive	MGI_C57BL6J_3619048	Mir30c-2	miRBase:MI0000548,NCBI_Gene:723964,ENSEMBL:ENSMUSG00000065567	MGI:3619048	miRNA gene	microRNA 30c-2
1	gene	23.293729	23.294075	positive	MGI_C57BL6J_5579813	Gm29107	ENSEMBL:ENSMUSG00000100775	MGI:5579813	lncRNA gene	predicted gene 29107
1	pseudogene	23.345956	23.346599	negative	MGI_C57BL6J_5434309	Gm20954	NCBI_Gene:100418001,ENSEMBL:ENSMUSG00000101226	MGI:5434309	pseudogene	predicted gene, 20954
1	gene	23.366424	23.397772	negative	MGI_C57BL6J_1917405	Ogfrl1	NCBI_Gene:70155,ENSEMBL:ENSMUSG00000026158	MGI:1917405	protein coding gene	opioid growth factor receptor-like 1
1	gene	23.391678	23.399959	negative	MGI_C57BL6J_5011858	Gm19673	NCBI_Gene:100503399	MGI:5011858	lncRNA gene	predicted gene, 19673
1	pseudogene	23.479520	23.480729	positive	MGI_C57BL6J_3645448	Gm7784	NCBI_Gene:665782,ENSEMBL:ENSMUSG00000097920	MGI:3645448	pseudogene	predicted gene 7784
1	gene	23.574443	23.596862	positive	MGI_C57BL6J_5579528	Gm28822	NCBI_Gene:105243890,ENSEMBL:ENSMUSG00000099503	MGI:5579528	lncRNA gene	predicted gene 28822
1	gene	23.761753	23.849158	positive	MGI_C57BL6J_2389490	B3gat2	NCBI_Gene:280645,ENSEMBL:ENSMUSG00000026156	MGI:2389490	protein coding gene	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
1	gene	23.844825	23.922450	negative	MGI_C57BL6J_2138261	Smap1	NCBI_Gene:98366,ENSEMBL:ENSMUSG00000026155	MGI:2138261	protein coding gene	small ArfGAP 1
1	gene	23.978191	24.005894	positive	MGI_C57BL6J_5477018	Gm26524	NCBI_Gene:105243891,ENSEMBL:ENSMUSG00000102495	MGI:5477018	lncRNA gene	predicted gene, 26524
1	gene	23.995939	24.005656	negative	MGI_C57BL6J_1915252	Sdhaf4	NCBI_Gene:68002,ENSEMBL:ENSMUSG00000026154	MGI:1915252	protein coding gene	succinate dehydrogenase complex assembly factor 4
1	gene	24.010758	24.100460	negative	MGI_C57BL6J_1915437	Fam135a	NCBI_Gene:68187,ENSEMBL:ENSMUSG00000026153	MGI:1915437	protein coding gene	family with sequence similarity 135, member A
1	pseudogene	24.071917	24.073152	positive	MGI_C57BL6J_5589915	Gm30756	NCBI_Gene:102632768	MGI:5589915	pseudogene	predicted gene, 30756
1	gene	24.100625	24.103424	positive	MGI_C57BL6J_5610808	Gm37580	ENSEMBL:ENSMUSG00000102398	MGI:5610808	unclassified gene	predicted gene, 37580
1	pseudogene	24.125275	24.126141	positive	MGI_C57BL6J_5477101	Gm26607	ENSEMBL:ENSMUSG00000097670	MGI:5477101	pseudogene	predicted gene, 26607
1	gene	24.177589	24.252738	positive	MGI_C57BL6J_88465	Col9a1	NCBI_Gene:12839,ENSEMBL:ENSMUSG00000026147	MGI:88465	protein coding gene	collagen, type IX, alpha 1
1	gene	24.257683	24.587535	negative	MGI_C57BL6J_1095415	Col19a1	NCBI_Gene:12823,ENSEMBL:ENSMUSG00000026141	MGI:1095415	protein coding gene	collagen, type XIX, alpha 1
1	gene	24.548841	24.548977	negative	MGI_C57BL6J_5456195	Gm26418	ENSEMBL:ENSMUSG00000077463	MGI:5456195	snoRNA gene	predicted gene, 26418
1	gene	24.586581	24.587739	positive	MGI_C57BL6J_3780964	Gm2795	NA	NA	unclassified gene	predicted gene 2795
1	pseudogene	24.593931	24.595489	negative	MGI_C57BL6J_3723458	Tubb4b-ps2	NCBI_Gene:665829,ENSEMBL:ENSMUSG00000099997	MGI:3723458	pseudogene	tubulin, beta 4B class IVB, pseudogene 2
1	pseudogene	24.611535	24.612410	negative	MGI_C57BL6J_5579145	Gm28439	ENSEMBL:ENSMUSG00000100131	MGI:5579145	pseudogene	predicted gene 28439
1	pseudogene	24.612404	24.612700	negative	MGI_C57BL6J_3642643	Gm10222	NCBI_Gene:100142658,ENSEMBL:ENSMUSG00000067736	MGI:3642643	pseudogene	predicted gene 10222
1	pseudogene	24.612775	24.613119	negative	MGI_C57BL6J_5579144	Gm28438	ENSEMBL:ENSMUSG00000101939	MGI:5579144	pseudogene	predicted gene 28438
1	pseudogene	24.613189	24.613971	negative	MGI_C57BL6J_5579143	Gm28437	ENSEMBL:ENSMUSG00000101111	MGI:5579143	pseudogene	predicted gene 28437
1	pseudogene	24.613971	24.614651	negative	MGI_C57BL6J_3809095	Gm10925	NCBI_Gene:100503946,ENSEMBL:ENSMUSG00000100862	MGI:3809095	pseudogene	predicted gene 10925
1	pseudogene	24.614885	24.615565	negative	MGI_C57BL6J_5579367	Gm28661	ENSEMBL:ENSMUSG00000102070	MGI:5579367	pseudogene	predicted gene 28661
1	pseudogene	24.615706	24.616197	negative	MGI_C57BL6J_5579922	Gm29216	ENSEMBL:ENSMUSG00000101249	MGI:5579922	pseudogene	predicted gene 29216
1	gene	24.678042	24.766301	positive	MGI_C57BL6J_1915671	Lmbrd1	NCBI_Gene:68421,ENSEMBL:ENSMUSG00000073725	MGI:1915671	protein coding gene	LMBR1 domain containing 1
1	pseudogene	24.910461	24.911659	negative	MGI_C57BL6J_5579300	Gm28594	ENSEMBL:ENSMUSG00000100808	MGI:5579300	pseudogene	predicted gene 28594
1	gene	24.963209	24.965158	negative	MGI_C57BL6J_5578943	Gm28237	ENSEMBL:ENSMUSG00000100483	MGI:5578943	lncRNA gene	predicted gene 28237
1	pseudogene	25.011941	25.012759	positive	MGI_C57BL6J_3779853	Gm9443	NCBI_Gene:669171,ENSEMBL:ENSMUSG00000100450	MGI:3779853	pseudogene	predicted gene 9443
1	gene	25.026581	25.027593	negative	MGI_C57BL6J_5580120	Gm29414	NCBI_Gene:105243892,ENSEMBL:ENSMUSG00000099392	MGI:5580120	lncRNA gene	predicted gene 29414
1	gene	25.067476	25.830205	negative	MGI_C57BL6J_2441837	Adgrb3	NCBI_Gene:210933,ENSEMBL:ENSMUSG00000033569	MGI:2441837	protein coding gene	adhesion G protein-coupled receptor B3
1	pseudogene	25.223730	25.224173	positive	MGI_C57BL6J_3783142	Gm15702	ENSEMBL:ENSMUSG00000080849	MGI:3783142	pseudogene	predicted gene 15702
1	gene	25.276404	25.277954	negative	MGI_C57BL6J_5012357	Gm20172	NCBI_Gene:100504323,ENSEMBL:ENSMUSG00000104257	MGI:5012357	protein coding gene	predicted gene, 20172
1	gene	25.279445	25.279551	negative	MGI_C57BL6J_5452037	Gm22260	ENSEMBL:ENSMUSG00000096866	MGI:5452037	snRNA gene	predicted gene, 22260
1	gene	25.284218	25.285248	negative	MGI_C57BL6J_5610771	Gm37543	ENSEMBL:ENSMUSG00000102296	MGI:5610771	unclassified gene	predicted gene, 37543
1	gene	25.296512	25.299886	negative	MGI_C57BL6J_5610559	Gm37331	ENSEMBL:ENSMUSG00000103209	MGI:5610559	unclassified gene	predicted gene, 37331
1	gene	25.314276	25.317708	negative	MGI_C57BL6J_5610439	Gm37211	ENSEMBL:ENSMUSG00000104027	MGI:5610439	unclassified gene	predicted gene, 37211
1	gene	25.325866	25.328398	negative	MGI_C57BL6J_5611090	Gm37862	ENSEMBL:ENSMUSG00000102407	MGI:5611090	unclassified gene	predicted gene, 37862
1	gene	25.345978	25.349082	negative	MGI_C57BL6J_5611514	Gm38286	ENSEMBL:ENSMUSG00000103214	MGI:5611514	unclassified gene	predicted gene, 38286
1	gene	25.362564	25.365820	negative	MGI_C57BL6J_5611108	Gm37880	ENSEMBL:ENSMUSG00000104100	MGI:5611108	unclassified gene	predicted gene, 37880
1	gene	25.451071	25.451174	positive	MGI_C57BL6J_5455071	Gm25294	ENSEMBL:ENSMUSG00000084740	MGI:5455071	snRNA gene	predicted gene, 25294
1	gene	25.608250	25.611184	negative	MGI_C57BL6J_5610239	Gm37011	ENSEMBL:ENSMUSG00000103889	MGI:5610239	unclassified gene	predicted gene, 37011
1	pseudogene	25.614946	25.615515	negative	MGI_C57BL6J_5579920	Gm29214	ENSEMBL:ENSMUSG00000101301	MGI:5579920	pseudogene	predicted gene 29214
1	gene	25.620238	25.623180	negative	MGI_C57BL6J_5610279	Gm37051	ENSEMBL:ENSMUSG00000104221	MGI:5610279	unclassified gene	predicted gene, 37051
1	gene	25.672245	25.676239	negative	MGI_C57BL6J_5611488	Gm38260	ENSEMBL:ENSMUSG00000102250	MGI:5611488	unclassified gene	predicted gene, 38260
1	gene	25.686062	25.691501	negative	MGI_C57BL6J_5610856	Gm37628	ENSEMBL:ENSMUSG00000102317	MGI:5610856	unclassified gene	predicted gene, 37628
1	gene	25.722038	25.724778	negative	MGI_C57BL6J_2442299	8030445P17Rik	ENSEMBL:ENSMUSG00000103563	MGI:2442299	unclassified gene	RIKEN cDNA 8030445P17 gene
1	gene	25.735389	25.738969	negative	MGI_C57BL6J_5611426	Gm38198	ENSEMBL:ENSMUSG00000102465	MGI:5611426	unclassified gene	predicted gene, 38198
1	gene	25.755343	25.759033	negative	MGI_C57BL6J_5610305	Gm37077	ENSEMBL:ENSMUSG00000102659	MGI:5610305	unclassified gene	predicted gene, 37077
1	gene	25.775757	25.780306	negative	MGI_C57BL6J_5611123	Gm37895	ENSEMBL:ENSMUSG00000103924	MGI:5611123	unclassified gene	predicted gene, 37895
1	gene	25.797281	25.800905	negative	MGI_C57BL6J_5610180	Gm36952	ENSEMBL:ENSMUSG00000104132	MGI:5610180	unclassified gene	predicted gene, 36952
1	gene	25.804097	25.807406	negative	MGI_C57BL6J_5610830	Gm37602	ENSEMBL:ENSMUSG00000102747	MGI:5610830	unclassified gene	predicted gene, 37602
1	gene	25.808956	25.809972	negative	MGI_C57BL6J_1920201	2900022M07Rik	ENSEMBL:ENSMUSG00000102386	MGI:1920201	unclassified gene	RIKEN cDNA 2900022M07 gene
1	gene	25.824390	25.824719	negative	MGI_C57BL6J_1925574	2900002M20Rik	ENSEMBL:ENSMUSG00000103004	MGI:1925574	unclassified gene	RIKEN cDNA 2900002M20 gene
1	gene	25.830419	25.837285	positive	MGI_C57BL6J_3642830	Gm9884	NCBI_Gene:108167844,ENSEMBL:ENSMUSG00000104516	MGI:3642830	lncRNA gene	predicted gene 9884
1	gene	25.879168	25.892305	positive	MGI_C57BL6J_5622499	Gm39614	NCBI_Gene:105243893	MGI:5622499	lncRNA gene	predicted gene, 39614
1	gene	25.896970	25.903608	negative	MGI_C57BL6J_5590235	Gm31076	NCBI_Gene:102633186	MGI:5590235	lncRNA gene	predicted gene, 31076
1	pseudogene	25.993020	25.994166	negative	MGI_C57BL6J_5011256	Gm19071	NCBI_Gene:100418203	MGI:5011256	pseudogene	predicted gene, 19071
1	pseudogene	25.996604	25.997159	negative	MGI_C57BL6J_5010628	Gm18443	NCBI_Gene:100417198,ENSEMBL:ENSMUSG00000101618	MGI:5010628	pseudogene	predicted gene, 18443
1	pseudogene	26.466236	26.466886	positive	MGI_C57BL6J_5011308	Gm19123	NCBI_Gene:100418295,ENSEMBL:ENSMUSG00000099458	MGI:5011308	pseudogene	predicted gene, 19123
1	gene	26.566833	26.566938	positive	MGI_C57BL6J_5453841	Gm24064	ENSEMBL:ENSMUSG00000088111	MGI:5453841	snoRNA gene	predicted gene, 24064
1	gene	26.619658	26.775020	positive	MGI_C57BL6J_5590295	Gm31136	NCBI_Gene:102633272	MGI:5590295	lncRNA gene	predicted gene, 31136
1	gene	26.681801	26.687460	negative	MGI_C57BL6J_3588222	4931408C20Rik	NCBI_Gene:210940,ENSEMBL:ENSMUSG00000073722	MGI:3588222	protein coding gene	RIKEN cDNA 4931408C20 gene
1	gene	26.959103	26.959221	negative	MGI_C57BL6J_4422074	n-R5s209	ENSEMBL:ENSMUSG00000095256	MGI:4422074	rRNA gene	nuclear encoded rRNA 5S 209
1	pseudogene	27.336352	27.336768	negative	MGI_C57BL6J_5011826	Gm19641	ENSEMBL:ENSMUSG00000100310	MGI:5011826	pseudogene	predicted gene, 19641
1	pseudogene	27.787873	27.788664	negative	MGI_C57BL6J_5010364	Gm18179	NCBI_Gene:100416668	MGI:5010364	pseudogene	predicted gene, 18179
1	gene	27.884014	27.902396	positive	MGI_C57BL6J_3646041	Gm5524	NCBI_Gene:433281,ENSEMBL:ENSMUSG00000101514	MGI:3646041	lncRNA gene	predicted gene 5524
1	pseudogene	27.900419	27.901072	negative	MGI_C57BL6J_5010961	Gm18776	NCBI_Gene:100417712,ENSEMBL:ENSMUSG00000101033	MGI:5010961	pseudogene	predicted gene, 18776
1	pseudogene	27.989910	27.991782	positive	MGI_C57BL6J_5011213	Gm19028	NCBI_Gene:100418140,ENSEMBL:ENSMUSG00000101372	MGI:5011213	pseudogene	predicted gene, 19028
1	gene	28.569918	28.571431	positive	MGI_C57BL6J_5611317	Gm38089	ENSEMBL:ENSMUSG00000103241	MGI:5611317	unclassified gene	predicted gene, 38089
1	gene	28.569918	28.571431	negative	MGI_C57BL6J_1923427	6330565B04Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 6330565B04 gene
1	pseudogene	28.580381	28.580772	negative	MGI_C57BL6J_3645212	Gm7846	NCBI_Gene:665903,ENSEMBL:ENSMUSG00000086240	MGI:3645212	pseudogene	predicted gene 7846
1	gene	28.776117	28.780252	negative	MGI_C57BL6J_2685443	Gm597	NCBI_Gene:210962,ENSEMBL:ENSMUSG00000048411	MGI:2685443	protein coding gene	predicted gene 597
1	gene	28.796145	28.895588	negative	MGI_C57BL6J_5825579	Gm45942	NCBI_Gene:108167331	MGI:5825579	lncRNA gene	predicted gene, 45942
1	pseudogene	28.800240	28.802802	negative	MGI_C57BL6J_3649021	Gm5697	NCBI_Gene:435614,ENSEMBL:ENSMUSG00000081557	MGI:3649021	pseudogene	predicted gene 5697
1	pseudogene	28.938035	28.938340	positive	MGI_C57BL6J_3647053	Gm6462	NCBI_Gene:623924,ENSEMBL:ENSMUSG00000058590	MGI:3647053	pseudogene	predicted gene 6462
1	pseudogene	29.219672	29.220249	positive	MGI_C57BL6J_5010218	Gm18033	NCBI_Gene:100416315,ENSEMBL:ENSMUSG00000101235	MGI:5010218	pseudogene	predicted gene, 18033
1	gene	29.280964	29.281075	negative	MGI_C57BL6J_5455363	Gm25586	ENSEMBL:ENSMUSG00000064433	MGI:5455363	unclassified non-coding RNA gene	predicted gene, 25586
1	gene	29.301480	29.301579	positive	MGI_C57BL6J_5452456	Gm22679	ENSEMBL:ENSMUSG00000080625	MGI:5452456	miRNA gene	predicted gene, 22679
1	gene	29.361275	29.361370	negative	MGI_C57BL6J_5453562	Gm23785	ENSEMBL:ENSMUSG00000080391	MGI:5453562	miRNA gene	predicted gene, 23785
1	gene	29.421488	29.421612	positive	MGI_C57BL6J_5530650	Mir6342	miRBase:MI0021870,NCBI_Gene:102465174,ENSEMBL:ENSMUSG00000099257	MGI:5530650	miRNA gene	microRNA 6342
1	pseudogene	29.484524	29.485934	negative	MGI_C57BL6J_3646042	Gm5525	NCBI_Gene:433283,ENSEMBL:ENSMUSG00000099492	MGI:3646042	pseudogene	predicted gene 5525
1	pseudogene	29.929988	29.930853	positive	MGI_C57BL6J_3644844	Gm7858	NCBI_Gene:665944,ENSEMBL:ENSMUSG00000101726	MGI:3644844	pseudogene	predicted gene 7858
1	gene	29.985934	29.986043	positive	MGI_C57BL6J_5453548	Gm23771	ENSEMBL:ENSMUSG00000096829	MGI:5453548	miRNA gene	predicted gene, 23771
1	gene	30.121013	30.139879	negative	MGI_C57BL6J_5590624	Gm31465	NCBI_Gene:102633704	MGI:5590624	lncRNA gene	predicted gene, 31465
1	gene	30.171705	30.262611	negative	MGI_C57BL6J_5590684	Gm31525	NCBI_Gene:102633779	MGI:5590684	lncRNA gene	predicted gene, 31525
1	gene	30.333291	30.333397	negative	MGI_C57BL6J_5530812	Gm27430	ENSEMBL:ENSMUSG00000098883	MGI:5530812	miRNA gene	predicted gene, 27430
1	gene	30.482932	30.755682	negative	MGI_C57BL6J_5622500	Gm39615	NCBI_Gene:105243894	MGI:5622500	lncRNA gene	predicted gene, 39615
1	gene	30.502305	30.516611	positive	MGI_C57BL6J_5590740	Gm31581	NCBI_Gene:102633854	MGI:5590740	lncRNA gene	predicted gene, 31581
1	pseudogene	30.642044	30.642316	negative	MGI_C57BL6J_5825723	Gm46086	NCBI_Gene:108167616	MGI:5825723	pseudogene	predicted gene, 46086
1	gene	30.718560	30.719962	negative	MGI_C57BL6J_3642391	Gm9898	ENSEMBL:ENSMUSG00000053185	MGI:3642391	lncRNA gene	predicted gene 9898
1	pseudogene	30.769687	30.772337	positive	MGI_C57BL6J_3645176	Gm6473	NCBI_Gene:624138,ENSEMBL:ENSMUSG00000100261	MGI:3645176	pseudogene	predicted gene 6473
1	pseudogene	30.790042	30.794946	negative	MGI_C57BL6J_3781092	Gm2914	NCBI_Gene:100040699,ENSEMBL:ENSMUSG00000101180	MGI:3781092	pseudogene	predicted gene 2914
1	gene	30.802339	30.873925	negative	MGI_C57BL6J_2446126	Phf3	NCBI_Gene:213109,ENSEMBL:ENSMUSG00000048874	MGI:2446126	protein coding gene	PHD finger protein 3
1	gene	30.833548	30.836431	negative	MGI_C57BL6J_5610750	Gm37522	ENSEMBL:ENSMUSG00000103783	MGI:5610750	unclassified gene	predicted gene, 37522
1	gene	30.865504	30.868538	negative	MGI_C57BL6J_5611134	Gm37906	ENSEMBL:ENSMUSG00000104315	MGI:5611134	unclassified gene	predicted gene, 37906
1	gene	30.872652	30.873475	positive	MGI_C57BL6J_3643372	Gm7256	NA	NA	unclassified gene	predicted gene 7256
1	gene	30.940302	30.950181	negative	MGI_C57BL6J_1277096	Ptp4a1	NCBI_Gene:19243,ENSEMBL:ENSMUSG00000026064,ENSEMBL:ENSMUSG00000117310	MGI:1277096	protein coding gene	protein tyrosine phosphatase 4a1
1	gene	30.977243	30.977968	negative	MGI_C57BL6J_3649020	Gm5698	NCBI_Gene:435615,ENSEMBL:ENSMUSG00000117091	MGI:3649020	protein coding gene	predicted gene 5698
1	pseudogene	30.986168	30.986996	negative	MGI_C57BL6J_3779868	Gm9458	NCBI_Gene:669402,ENSEMBL:ENSMUSG00000086726	MGI:3779868	pseudogene	predicted gene 9458
1	gene	30.997842	31.222684	negative	MGI_C57BL6J_1918238	4931428L18Rik	NCBI_Gene:70988,ENSEMBL:ENSMUSG00000086727	MGI:1918238	protein coding gene	RIKEN cDNA 4931428L18 gene
1	pseudogene	30.998186	30.998908	negative	MGI_C57BL6J_3648192	Gm5699	NCBI_Gene:435616	MGI:3648192	pseudogene	predicted gene 5699
1	gene	31.019096	31.044774	positive	MGI_C57BL6J_5579350	Gm28644	NCBI_Gene:102634159,ENSEMBL:ENSMUSG00000100237	MGI:5579350	lncRNA gene	predicted gene 28644
1	gene	31.019188	31.096454	negative	MGI_C57BL6J_5580375	Gm29669	NCBI_Gene:102634473	MGI:5580375	lncRNA gene	predicted gene 29669
1	gene	31.122725	31.122862	negative	MGI_C57BL6J_5530744	Gm27362	ENSEMBL:ENSMUSG00000098529	MGI:5530744	rRNA gene	predicted gene, 27362
1	gene	31.136026	31.150105	positive	MGI_C57BL6J_5579834	Gm29128	ENSEMBL:ENSMUSG00000100910	MGI:5579834	lncRNA gene	predicted gene 29128
1	pseudogene	31.164439	31.165408	positive	MGI_C57BL6J_3648015	Gm7893	NCBI_Gene:666020,ENSEMBL:ENSMUSG00000099796	MGI:3648015	pseudogene	predicted gene 7893
1	gene	31.176401	31.204725	positive	MGI_C57BL6J_2672844	Lgsn	NCBI_Gene:266744,ENSEMBL:ENSMUSG00000050217	MGI:2672844	protein coding gene	lengsin, lens protein with glutamine synthetase domain
1	gene	31.222838	31.224288	positive	MGI_C57BL6J_1921958	Pih1d3	NCBI_Gene:74708,ENSEMBL:ENSMUSG00000026063	MGI:1921958	protein coding gene	PIH1 domain containing 3
1	gene	31.259593	31.259719	negative	MGI_C57BL6J_5455922	Gm26145	ENSEMBL:ENSMUSG00000077664	MGI:5455922	snoRNA gene	predicted gene, 26145
1	pseudogene	31.264847	31.268061	positive	MGI_C57BL6J_3647946	Gm4850	NCBI_Gene:226957,ENSEMBL:ENSMUSG00000100205	MGI:3647946	pseudogene	predicted pseudogene 4850
1	pseudogene	31.274892	31.275455	positive	MGI_C57BL6J_5579351	Gm28645	ENSEMBL:ENSMUSG00000100592	MGI:5579351	pseudogene	predicted gene 28645
1	pseudogene	31.286945	31.288051	positive	MGI_C57BL6J_3646684	Gm6489	NCBI_Gene:624262,ENSEMBL:ENSMUSG00000094215	MGI:3646684	pseudogene	predicted gene 6489
1	pseudogene	31.559540	31.561400	positive	MGI_C57BL6J_3642371	Eef1a1-ps2	NCBI_Gene:624275,ENSEMBL:ENSMUSG00000101093	MGI:3642371	pseudogene	eukaryotic translation elongation factor 1 alpha 1, pseudogene 2
1	pseudogene	31.615149	31.616843	positive	MGI_C57BL6J_5011865	Gm19680	NCBI_Gene:100503415,ENSEMBL:ENSMUSG00000070960	MGI:5011865	pseudogene	predicted gene, 19680
1	gene	31.656632	31.656738	negative	MGI_C57BL6J_5452809	Gm23032	ENSEMBL:ENSMUSG00000088620	MGI:5452809	snRNA gene	predicted gene, 23032
1	pseudogene	31.736057	31.737089	positive	MGI_C57BL6J_3645646	Gm7910	NCBI_Gene:666056,ENSEMBL:ENSMUSG00000082159	MGI:3645646	pseudogene	predicted gene 7910
1	gene	32.172687	32.705224	positive	MGI_C57BL6J_2159649	Khdrbs2	NCBI_Gene:170771,ENSEMBL:ENSMUSG00000026058	MGI:2159649	protein coding gene	KH domain containing, RNA binding, signal transduction associated 2
1	gene	32.213133	32.213239	negative	MGI_C57BL6J_5455591	Gm25814	ENSEMBL:ENSMUSG00000064688	MGI:5455591	snRNA gene	predicted gene, 25814
1	pseudogene	32.250668	32.272788	positive	MGI_C57BL6J_5825714	Gm46077	NCBI_Gene:108167593	MGI:5825714	pseudogene	predicted gene, 46077
1	gene	32.473757	32.475565	positive	MGI_C57BL6J_5611227	Gm37999	ENSEMBL:ENSMUSG00000103482	MGI:5611227	unclassified gene	predicted gene, 37999
1	gene	32.485315	32.486942	positive	MGI_C57BL6J_5610338	Gm37110	ENSEMBL:ENSMUSG00000104498	MGI:5610338	unclassified gene	predicted gene, 37110
1	gene	32.496444	32.497988	positive	MGI_C57BL6J_5611139	Gm37911	ENSEMBL:ENSMUSG00000104313	MGI:5611139	unclassified gene	predicted gene, 37911
1	gene	32.519563	32.520999	negative	MGI_C57BL6J_3641910	Gm9839	NCBI_Gene:408192,ENSEMBL:ENSMUSG00000102865	MGI:3641910	protein coding gene	predicted gene 9839
1	gene	32.539028	32.542440	positive	MGI_C57BL6J_5611020	Gm37792	ENSEMBL:ENSMUSG00000102321	MGI:5611020	unclassified gene	predicted gene, 37792
1	gene	32.543546	32.547294	negative	MGI_C57BL6J_3644687	Gm5415	NCBI_Gene:408191,ENSEMBL:ENSMUSG00000091318	MGI:3644687	protein coding gene	predicted gene 5415
1	gene	32.568359	32.568421	negative	MGI_C57BL6J_5454509	Gm24732	ENSEMBL:ENSMUSG00000089489	MGI:5454509	snRNA gene	predicted gene, 24732
1	gene	32.710179	32.712648	positive	MGI_C57BL6J_5610654	Gm37426	ENSEMBL:ENSMUSG00000104433	MGI:5610654	unclassified gene	predicted gene, 37426
1	gene	32.726639	32.726930	positive	MGI_C57BL6J_5452801	Gm23024	ENSEMBL:ENSMUSG00000089395	MGI:5452801	unclassified non-coding RNA gene	predicted gene, 23024
1	gene	32.738535	32.747184	positive	MGI_C57BL6J_5825872	Gm46235	NCBI_Gene:108167822	MGI:5825872	lncRNA gene	predicted gene, 46235
1	gene	32.967484	32.972490	negative	MGI_C57BL6J_5610379	Gm37151	ENSEMBL:ENSMUSG00000102926	MGI:5610379	unclassified gene	predicted gene, 37151
1	pseudogene	33.028160	33.030290	negative	MGI_C57BL6J_5579330	Gm28624	ENSEMBL:ENSMUSG00000100497	MGI:5579330	pseudogene	predicted gene 28624
1	gene	33.065130	33.066350	positive	MGI_C57BL6J_5610952	Gm37724	ENSEMBL:ENSMUSG00000102917	MGI:5610952	lncRNA gene	predicted gene, 37724
1	pseudogene	33.100906	33.102695	positive	MGI_C57BL6J_3643085	Gm7114	NCBI_Gene:633498,ENSEMBL:ENSMUSG00000100481	MGI:3643085	pseudogene	predicted gene 7114
1	pseudogene	33.108905	33.109657	negative	MGI_C57BL6J_3646908	Gm4785	NCBI_Gene:213711,ENSEMBL:ENSMUSG00000100590	MGI:3646908	pseudogene	predicted gene 4785
1	gene	33.133243	33.176251	negative	MGI_C57BL6J_5622501	Gm39616	NCBI_Gene:105243895	MGI:5622501	lncRNA gene	predicted gene, 39616
1	gene	33.191993	33.192102	positive	MGI_C57BL6J_5454678	Gm24901	ENSEMBL:ENSMUSG00000088750	MGI:5454678	snRNA gene	predicted gene, 24901
1	gene	33.212774	33.215475	negative	MGI_C57BL6J_5610819	Gm37591	ENSEMBL:ENSMUSG00000104230	MGI:5610819	lncRNA gene	predicted gene, 37591
1	pseudogene	33.235939	33.237631	positive	MGI_C57BL6J_3781165	Gm2987	NCBI_Gene:100418410,ENSEMBL:ENSMUSG00000101754	MGI:3781165	pseudogene	predicted gene 2987
1	gene	33.290823	33.354602	negative	MGI_C57BL6J_5622502	Gm39617	NCBI_Gene:105243896	MGI:5622502	lncRNA gene	predicted gene, 39617
1	gene	33.293676	33.293775	positive	MGI_C57BL6J_5455569	Gm25792	ENSEMBL:ENSMUSG00000065223	MGI:5455569	snRNA gene	predicted gene, 25792
1	pseudogene	33.315670	33.316582	negative	MGI_C57BL6J_5010984	Gm18799	NCBI_Gene:100417744,ENSEMBL:ENSMUSG00000100318	MGI:5010984	pseudogene	predicted gene, 18799
1	pseudogene	33.371331	33.373585	positive	MGI_C57BL6J_3643452	Gm7933	NCBI_Gene:666108,ENSEMBL:ENSMUSG00000101612	MGI:3643452	pseudogene	predicted gene 7933
1	gene	33.422733	33.422838	positive	MGI_C57BL6J_5453230	Gm23453	ENSEMBL:ENSMUSG00000065260	MGI:5453230	snRNA gene	predicted gene, 23453
1	gene	33.453808	33.669795	negative	MGI_C57BL6J_97758	Prim2	NCBI_Gene:19076,ENSEMBL:ENSMUSG00000026134	MGI:97758	protein coding gene	DNA primase, p58 subunit
1	pseudogene	33.482085	33.483986	positive	MGI_C57BL6J_5579934	Gm29228	NCBI_Gene:102634920,ENSEMBL:ENSMUSG00000101682	MGI:5579934	pseudogene	predicted gene 29228
1	gene	33.522521	33.530620	positive	MGI_C57BL6J_5622503	Gm39618	NCBI_Gene:105243897	MGI:5622503	lncRNA gene	predicted gene, 39618
1	gene	33.613758	33.616832	negative	MGI_C57BL6J_5610846	Gm37618	ENSEMBL:ENSMUSG00000102714	MGI:5610846	unclassified gene	predicted gene, 37618
1	pseudogene	33.657689	33.658673	positive	MGI_C57BL6J_5009998	Gm17813	NCBI_Gene:100302654,ENSEMBL:ENSMUSG00000102093	MGI:5009998	pseudogene	predicted gene, 17813
1	gene	33.669824	33.670712	positive	MGI_C57BL6J_1914753	1700001G17Rik	NCBI_Gene:67503,ENSEMBL:ENSMUSG00000103746	MGI:1914753	lncRNA gene	RIKEN cDNA 1700001G17 gene
1	gene	33.671915	33.674228	negative	MGI_C57BL6J_5611401	Gm38173	ENSEMBL:ENSMUSG00000102198	MGI:5611401	unclassified gene	predicted gene, 38173
1	gene	33.714183	33.719895	negative	MGI_C57BL6J_5591388	Gm32229	NCBI_Gene:102634710	MGI:5591388	lncRNA gene	predicted gene, 32229
1	gene	33.719887	33.742564	positive	MGI_C57BL6J_99833	Rab23	NCBI_Gene:19335,ENSEMBL:ENSMUSG00000004768	MGI:99833	protein coding gene	RAB23, member RAS oncogene family
1	gene	33.745484	33.757795	negative	MGI_C57BL6J_1891254	Bag2	NCBI_Gene:213539,ENSEMBL:ENSMUSG00000042215	MGI:1891254	protein coding gene	BCL2-associated athanogene 2
1	gene	33.748007	33.748347	positive	MGI_C57BL6J_5611133	Gm37905	ENSEMBL:ENSMUSG00000103072	MGI:5611133	unclassified gene	predicted gene, 37905
1	gene	33.761541	33.815456	negative	MGI_C57BL6J_2137896	Zfp451	NCBI_Gene:98403,ENSEMBL:ENSMUSG00000042197	MGI:2137896	protein coding gene	zinc finger protein 451
1	pseudogene	33.835899	33.838914	negative	MGI_C57BL6J_3705563	Gm15455	NCBI_Gene:433287,ENSEMBL:ENSMUSG00000081402	MGI:3705563	pseudogene	predicted gene 15455
1	gene	33.852052	33.907934	negative	MGI_C57BL6J_2444572	Bend6	NCBI_Gene:320705,ENSEMBL:ENSMUSG00000042182	MGI:2444572	protein coding gene	BEN domain containing 6
1	gene	33.873086	33.874756	negative	MGI_C57BL6J_5621356	Gm38471	NCBI_Gene:102634918	MGI:5621356	lncRNA gene	predicted gene, 38471
1	gene	33.889490	33.891117	negative	MGI_C57BL6J_5610295	Gm37067	ENSEMBL:ENSMUSG00000104416	MGI:5610295	unclassified gene	predicted gene, 37067
1	gene	33.908213	34.308662	positive	MGI_C57BL6J_104627	Dst	NCBI_Gene:13518,ENSEMBL:ENSMUSG00000026131	MGI:104627	protein coding gene	dystonin
1	gene	33.922455	33.924838	positive	MGI_C57BL6J_5610582	Gm37354	ENSEMBL:ENSMUSG00000103596	MGI:5610582	unclassified gene	predicted gene, 37354
1	pseudogene	33.963352	33.963685	negative	MGI_C57BL6J_5579337	Gm28631	ENSEMBL:ENSMUSG00000099382	MGI:5579337	pseudogene	predicted gene 28631
1	gene	33.981410	33.981502	negative	MGI_C57BL6J_5453569	Gm23792	ENSEMBL:ENSMUSG00000084506	MGI:5453569	snRNA gene	predicted gene, 23792
1	gene	34.032100	34.033797	positive	MGI_C57BL6J_5611385	Gm38157	ENSEMBL:ENSMUSG00000103364	MGI:5611385	unclassified gene	predicted gene, 38157
1	gene	34.117359	34.117431	positive	MGI_C57BL6J_5562721	Mir6896	miRBase:MI0022743,NCBI_Gene:102466987,ENSEMBL:ENSMUSG00000105982	MGI:5562721	miRNA gene	microRNA 6896
1	gene	34.165856	34.178446	negative	MGI_C57BL6J_5477282	Gm26788	NCBI_Gene:108167617,ENSEMBL:ENSMUSG00000096992	MGI:5477282	lncRNA gene	predicted gene, 26788
1	gene	34.236596	34.238820	positive	MGI_C57BL6J_3045265	D630036G22Rik	NA	NA	unclassified gene	RIKEN cDNA D630036G22 gene
1	gene	34.269882	34.271128	negative	MGI_C57BL6J_1924441	A930005N03Rik	ENSEMBL:ENSMUSG00000103001	MGI:1924441	unclassified non-coding RNA gene	RIKEN cDNA A930005N03 gene
1	gene	34.329433	34.330307	negative	MGI_C57BL6J_5611186	Gm37958	ENSEMBL:ENSMUSG00000104397	MGI:5611186	lncRNA gene	predicted gene, 37958
1	gene	34.350775	34.351161	positive	MGI_C57BL6J_5610613	Gm37385	ENSEMBL:ENSMUSG00000102839	MGI:5610613	unclassified gene	predicted gene, 37385
1	pseudogene	34.367371	34.369003	positive	MGI_C57BL6J_3646119	Gm5266	NCBI_Gene:383629,ENSEMBL:ENSMUSG00000101206	MGI:3646119	pseudogene	predicted gene 5266
1	pseudogene	34.415050	34.417986	negative	MGI_C57BL6J_3781230	Gm3052	ENSEMBL:ENSMUSG00000101462	MGI:3781230	pseudogene	predicted gene 3052
1	gene	34.427002	34.433264	negative	MGI_C57BL6J_5610461	Gm37233	ENSEMBL:ENSMUSG00000102336	MGI:5610461	lncRNA gene	predicted gene, 37233
1	gene	34.433121	34.433199	negative	MGI_C57BL6J_4950423	Mir5103	miRBase:MI0018011,NCBI_Gene:100628580,ENSEMBL:ENSMUSG00000092852	MGI:4950423	miRNA gene	microRNA 5103
1	gene	34.434812	34.434883	negative	MGI_C57BL6J_4413856	n-TEttc1	NCBI_Gene:102467303	MGI:4413856	tRNA gene	nuclear encoded tRNA glutamic acid 1 (anticodon TTC)
1	gene	34.436670	34.439672	negative	MGI_C57BL6J_1916918	Ccdc115	NCBI_Gene:69668,ENSEMBL:ENSMUSG00000042111	MGI:1916918	protein coding gene	coiled-coil domain containing 115
1	gene	34.439511	34.444730	negative	MGI_C57BL6J_5579012	Gm28306	ENSEMBL:ENSMUSG00000101711	MGI:5579012	lncRNA gene	predicted gene 28306
1	gene	34.439829	34.449356	positive	MGI_C57BL6J_106572	Imp4	NCBI_Gene:27993,ENSEMBL:ENSMUSG00000026127	MGI:106572	protein coding gene	IMP4, U3 small nucleolar ribonucleoprotein
1	gene	34.448735	34.449350	negative	MGI_C57BL6J_1196435	D1Ertd448e	NA	NA	unclassified gene	DNA segment%2c Chr 1%2c ERATO Doi 448%2c expressed
1	gene	34.459009	34.459827	negative	MGI_C57BL6J_5591663	Gm32504	NCBI_Gene:102635078	MGI:5591663	lncRNA gene	predicted gene, 32504
1	gene	34.459746	34.475733	positive	MGI_C57BL6J_108410	Ptpn18	NCBI_Gene:19253,ENSEMBL:ENSMUSG00000026126	MGI:108410	protein coding gene	protein tyrosine phosphatase, non-receptor type 18
1	gene	34.468834	34.473148	negative	MGI_C57BL6J_5579123	Gm28417	ENSEMBL:ENSMUSG00000100280	MGI:5579123	lncRNA gene	predicted gene 28417
1	gene	34.474787	34.485981	positive	MGI_C57BL6J_5591725	Gm32566	NCBI_Gene:102635157	MGI:5591725	lncRNA gene	predicted gene, 32566
1	gene	34.477167	34.499219	negative	MGI_C57BL6J_1923133	4930568A12Rik	NCBI_Gene:75883,ENSEMBL:ENSMUSG00000101223	MGI:1923133	lncRNA gene	RIKEN cDNA 4930568A12 gene
1	gene	34.498410	34.503063	positive	MGI_C57BL6J_1270856	Prss39	NCBI_Gene:21755,ENSEMBL:ENSMUSG00000026125	MGI:1270856	protein coding gene	protease, serine 39
1	pseudogene	34.523716	34.524007	negative	MGI_C57BL6J_5579122	Gm28416	ENSEMBL:ENSMUSG00000101116	MGI:5579122	pseudogene	predicted gene 28416
1	gene	34.535648	34.544313	positive	MGI_C57BL6J_109448	Cfc1	NCBI_Gene:12627,ENSEMBL:ENSMUSG00000026124	MGI:109448	protein coding gene	cripto, FRL-1, cryptic family 1
1	gene	34.536515	34.560995	negative	MGI_C57BL6J_1270857	Prss40	NCBI_Gene:21756,ENSEMBL:ENSMUSG00000037529	MGI:1270857	protein coding gene	protease, serine 40
1	pseudogene	34.538065	34.538562	negative	MGI_C57BL6J_5579125	Gm28419	NCBI_Gene:102635016,ENSEMBL:ENSMUSG00000101803	MGI:5579125	pseudogene	predicted gene 28419
1	pseudogene	34.571217	34.571942	positive	MGI_C57BL6J_5011410	Gm19225	NCBI_Gene:100418459	MGI:5011410	pseudogene	predicted gene, 19225
1	gene	34.578932	34.590944	positive	MGI_C57BL6J_3026939	Amer3	NCBI_Gene:211383,ENSEMBL:ENSMUSG00000045174	MGI:3026939	protein coding gene	APC membrane recruitment 3
1	gene	34.579202	34.579711	negative	MGI_C57BL6J_1920839	1700101I19Rik	ENSEMBL:ENSMUSG00000045815	MGI:1920839	lncRNA gene	RIKEN cDNA 1700101I19 gene
1	pseudogene	34.607297	34.607719	negative	MGI_C57BL6J_5579124	Gm28418	ENSEMBL:ENSMUSG00000100524	MGI:5579124	pseudogene	predicted gene 28418
1	pseudogene	34.610572	34.610806	negative	MGI_C57BL6J_5610212	Gm36984	ENSEMBL:ENSMUSG00000102499	MGI:5610212	pseudogene	predicted gene, 36984
1	pseudogene	34.610908	34.615280	negative	MGI_C57BL6J_5588889	Gm29730	NCBI_Gene:101055845,ENSEMBL:ENSMUSG00000103521	MGI:5588889	pseudogene	predicted gene, 29730
1	pseudogene	34.633535	34.636210	negative	MGI_C57BL6J_3035322	AA619741	NCBI_Gene:241051,ENSEMBL:ENSMUSG00000104098	MGI:3035322	pseudogene	expressed sequence AA619741
1	gene	34.657236	34.667004	negative	MGI_C57BL6J_5621532	Gm38647	NCBI_Gene:102642976	MGI:5621532	lncRNA gene	predicted gene, 38647
1	gene	34.678188	34.813309	positive	MGI_C57BL6J_2442507	Arhgef4	NCBI_Gene:226970,ENSEMBL:ENSMUSG00000037509	MGI:2442507	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 4
1	gene	34.685665	34.688842	negative	MGI_C57BL6J_5592079	Gm32920	NCBI_Gene:102635632	MGI:5592079	lncRNA gene	predicted gene, 32920
1	gene	34.748272	34.757061	negative	MGI_C57BL6J_5825724	Gm46087	NCBI_Gene:108167618	MGI:5825724	lncRNA gene	predicted gene, 46087
1	pseudogene	34.752775	34.752922	positive	MGI_C57BL6J_5610452	Gm37224	ENSEMBL:ENSMUSG00000102537	MGI:5610452	pseudogene	predicted gene, 37224
1	pseudogene	34.753123	34.753477	positive	MGI_C57BL6J_5611073	Gm37845	ENSEMBL:ENSMUSG00000102612	MGI:5611073	pseudogene	predicted gene, 37845
1	gene	34.759936	34.792553	negative	MGI_C57BL6J_5591949	Gm32790	NCBI_Gene:102635458	MGI:5591949	lncRNA gene	predicted gene, 32790
1	gene	34.809360	34.811908	negative	MGI_C57BL6J_5611564	Gm38336	ENSEMBL:ENSMUSG00000104002	MGI:5611564	lncRNA gene	predicted gene, 38336
1	gene	34.813218	34.843065	negative	MGI_C57BL6J_2448487	Fam168b	NCBI_Gene:214469,ENSEMBL:ENSMUSG00000037503	MGI:2448487	protein coding gene	family with sequence similarity 168, member B
1	gene	34.823525	34.826560	positive	MGI_C57BL6J_5610355	Gm37127	ENSEMBL:ENSMUSG00000104358	MGI:5610355	unclassified gene	predicted gene, 37127
1	gene	34.849941	34.879585	positive	MGI_C57BL6J_2385825	Plekhb2	NCBI_Gene:226971,ENSEMBL:ENSMUSG00000026123	MGI:2385825	protein coding gene	pleckstrin homology domain containing, family B (evectins) member 2
1	pseudogene	34.879940	34.930645	positive	MGI_C57BL6J_5011615	Gm19430	NCBI_Gene:100502882,ENSEMBL:ENSMUSG00000103716	MGI:5011615	pseudogene	predicted gene, 19430
1	pseudogene	34.969627	34.969855	negative	MGI_C57BL6J_5610898	Gm37670	ENSEMBL:ENSMUSG00000103548	MGI:5610898	pseudogene	predicted gene, 37670
1	pseudogene	34.970057	34.970561	positive	MGI_C57BL6J_3648650	Gm8009	NCBI_Gene:666261,ENSEMBL:ENSMUSG00000103760	MGI:3648650	pseudogene	predicted gene 8009
1	pseudogene	34.985656	34.985890	positive	MGI_C57BL6J_5611255	Gm38027	ENSEMBL:ENSMUSG00000103997	MGI:5611255	pseudogene	predicted gene, 38027
1	gene	35.178956	35.179084	negative	MGI_C57BL6J_5454873	Gm25096	ENSEMBL:ENSMUSG00000077231	MGI:5454873	snoRNA gene	predicted gene, 25096
1	gene	35.625606	35.651297	negative	MGI_C57BL6J_5610296	Gm37068	ENSEMBL:ENSMUSG00000104417	MGI:5610296	lncRNA gene	predicted gene, 37068
1	gene	35.761602	35.761706	positive	MGI_C57BL6J_5455411	Gm25634	ENSEMBL:ENSMUSG00000064601	MGI:5455411	snRNA gene	predicted gene, 25634
1	gene	35.806974	35.810462	positive	MGI_C57BL6J_5579121	Gm28415	ENSEMBL:ENSMUSG00000101714	MGI:5579121	lncRNA gene	predicted gene 28415
1	gene	35.869595	35.881165	positive	MGI_C57BL6J_1915733	1110002O04Rik	NCBI_Gene:68483,ENSEMBL:ENSMUSG00000102531	MGI:1915733	lncRNA gene	RIKEN cDNA 1110002O04 gene
1	gene	35.942013	35.955016	positive	MGI_C57BL6J_5592335	Gm33176	NCBI_Gene:102635977	MGI:5592335	lncRNA gene	predicted gene, 33176
1	pseudogene	35.958919	35.959822	positive	MGI_C57BL6J_3647993	Gm8022	NCBI_Gene:666283,ENSEMBL:ENSMUSG00000103096	MGI:3647993	pseudogene	predicted gene 8022
1	gene	35.959999	35.965098	positive	MGI_C57BL6J_5622507	Gm39622	NCBI_Gene:105243901	MGI:5622507	lncRNA gene	predicted gene, 39622
1	gene	35.981960	35.986373	negative	MGI_C57BL6J_5610374	Gm37146	ENSEMBL:ENSMUSG00000102279	MGI:5610374	lncRNA gene	predicted gene, 37146
1	gene	36.001939	36.011073	negative	MGI_C57BL6J_5592381	Gm33222	NCBI_Gene:102636039,ENSEMBL:ENSMUSG00000103708	MGI:5592381	lncRNA gene	predicted gene, 33222
1	gene	36.011072	36.011894	positive	MGI_C57BL6J_1925283	4930535G08Rik	ENSEMBL:ENSMUSG00000104201	MGI:1925283	lncRNA gene	RIKEN cDNA 4930535G08 gene
1	gene	36.016795	36.021488	positive	MGI_C57BL6J_5622508	Gm39623	NCBI_Gene:105243902	MGI:5622508	lncRNA gene	predicted gene, 39623
1	gene	36.029647	36.031018	negative	MGI_C57BL6J_5611277	Gm38049	ENSEMBL:ENSMUSG00000102434	MGI:5611277	unclassified gene	predicted gene, 38049
1	gene	36.058718	36.066243	negative	MGI_C57BL6J_5622509	Gm39624	NCBI_Gene:105243903	MGI:5622509	lncRNA gene	predicted gene, 39624
1	gene	36.068400	36.106446	positive	MGI_C57BL6J_1354958	Hs6st1	NCBI_Gene:50785,ENSEMBL:ENSMUSG00000045216	MGI:1354958	protein coding gene	heparan sulfate 6-O-sulfotransferase 1
1	gene	36.105384	36.106446	negative	MGI_C57BL6J_5610563	Gm37335	ENSEMBL:ENSMUSG00000104523	MGI:5610563	lncRNA gene	predicted gene, 37335
1	gene	36.129866	36.138746	positive	MGI_C57BL6J_5592439	Gm33280	NCBI_Gene:102636118,ENSEMBL:ENSMUSG00000102202	MGI:5592439	lncRNA gene	predicted gene, 33280
1	gene	36.140027	36.244720	negative	MGI_C57BL6J_2443162	Uggt1	NCBI_Gene:320011,ENSEMBL:ENSMUSG00000037470	MGI:2443162	protein coding gene	UDP-glucose glycoprotein glucosyltransferase 1
1	gene	36.144252	36.144313	negative	MGI_C57BL6J_5531034	Mir6897	miRBase:MI0022744,NCBI_Gene:102465540,ENSEMBL:ENSMUSG00000098752	MGI:5531034	miRNA gene	microRNA 6897
1	pseudogene	36.177669	36.179017	negative	MGI_C57BL6J_5010935	Gm18750	NCBI_Gene:100417669	MGI:5010935	pseudogene	predicted gene, 18750
1	gene	36.244383	36.250542	positive	MGI_C57BL6J_5622510	Gm39625	NCBI_Gene:105243904	MGI:5622510	lncRNA gene	predicted gene, 39625
1	gene	36.264597	36.274679	negative	MGI_C57BL6J_2429944	Neurl3	NCBI_Gene:214854,ENSEMBL:ENSMUSG00000047180	MGI:2429944	protein coding gene	neuralized E3 ubiquitin protein ligase 3
1	gene	36.307733	36.324036	positive	MGI_C57BL6J_2443039	Arid5a	NCBI_Gene:214855,ENSEMBL:ENSMUSG00000037447	MGI:2443039	protein coding gene	AT rich interactive domain 5A (MRF1-like)
1	gene	36.332708	36.333420	positive	MGI_C57BL6J_1921057	4930403P22Rik	ENSEMBL:ENSMUSG00000102762	MGI:1921057	lncRNA gene	RIKEN cDNA 4930403P22 gene
1	gene	36.335730	36.369193	negative	MGI_C57BL6J_1918055	Kansl3	NCBI_Gene:226976,ENSEMBL:ENSMUSG00000010453	MGI:1918055	protein coding gene	KAT8 regulatory NSL complex subunit 3
1	gene	36.348682	36.348758	negative	MGI_C57BL6J_5531198	Mir6898	miRBase:MI0022745,NCBI_Gene:102465541,ENSEMBL:ENSMUSG00000098680	MGI:5531198	miRNA gene	microRNA 6898
1	gene	36.372183	36.422110	positive	MGI_C57BL6J_3616091	Fer1l5	NCBI_Gene:100534273,ENSEMBL:ENSMUSG00000037432	MGI:3616091	protein coding gene	fer-1-like 5 (C. elegans)
1	gene	36.419871	36.445272	negative	MGI_C57BL6J_2443010	Lman2l	NCBI_Gene:214895,ENSEMBL:ENSMUSG00000001143	MGI:2443010	protein coding gene	lectin, mannose-binding 2-like
1	gene	36.461978	36.462873	positive	MGI_C57BL6J_5592560	Gm33401	NCBI_Gene:102636293	MGI:5592560	lncRNA gene	predicted gene, 33401
1	gene	36.464718	36.471546	negative	MGI_C57BL6J_5592613	Gm33454	NCBI_Gene:102636368	MGI:5592613	lncRNA gene	predicted gene, 33454
1	gene	36.471597	36.508776	positive	MGI_C57BL6J_2151060	Cnnm4	NCBI_Gene:94220,ENSEMBL:ENSMUSG00000037408	MGI:2151060	protein coding gene	cyclin M4
1	gene	36.473952	36.476110	positive	MGI_C57BL6J_5611137	Gm37909	ENSEMBL:ENSMUSG00000104316	MGI:5611137	unclassified gene	predicted gene, 37909
1	gene	36.506562	36.506702	positive	MGI_C57BL6J_6096125	Gm47280	ENSEMBL:ENSMUSG00000106081	MGI:6096125	miRNA gene	predicted gene, 47280
1	gene	36.511854	36.528237	positive	MGI_C57BL6J_2151055	Cnnm3	NCBI_Gene:94218,ENSEMBL:ENSMUSG00000001138	MGI:2151055	protein coding gene	cyclin M3
1	gene	36.527534	36.528237	negative	MGI_C57BL6J_5611261	Gm38033	ENSEMBL:ENSMUSG00000102845	MGI:5611261	lncRNA gene	predicted gene, 38033
1	gene	36.530188	36.536883	negative	MGI_C57BL6J_1925571	Ankrd23	NCBI_Gene:78321,ENSEMBL:ENSMUSG00000067653	MGI:1925571	protein coding gene	ankyrin repeat domain 23
1	gene	36.530193	36.539429	negative	MGI_C57BL6J_5649003	Gm42417	ENSEMBL:ENSMUSG00000109510	MGI:5649003	protein coding gene	predicted gene, 42417
1	gene	36.537507	36.547445	negative	MGI_C57BL6J_1914816	Ankrd39	NCBI_Gene:109346,ENSEMBL:ENSMUSG00000079610	MGI:1914816	protein coding gene	ankyrin repeat domain 39
1	gene	36.548639	36.558381	negative	MGI_C57BL6J_109252	Sema4c	NCBI_Gene:20353,ENSEMBL:ENSMUSG00000026121	MGI:109252	protein coding gene	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
1	gene	36.557701	36.565613	positive	MGI_C57BL6J_2442526	D430040D24Rik	ENSEMBL:ENSMUSG00000087589	MGI:2442526	lncRNA gene	RIKEN cDNA D430040D24 gene
1	gene	36.562692	36.683190	negative	MGI_C57BL6J_3026913	Fam178b	NCBI_Gene:381337,ENSEMBL:ENSMUSG00000046337	MGI:3026913	protein coding gene	family with sequence similarity 178, member B
1	pseudogene	36.601802	36.602146	positive	MGI_C57BL6J_3649065	Gm6428	ENSEMBL:ENSMUSG00000089906	MGI:3649065	pseudogene	predicted pseudogene 6428
1	gene	36.663965	36.664039	positive	MGI_C57BL6J_5453910	Gm24133	ENSEMBL:ENSMUSG00000077939	MGI:5453910	miRNA gene	predicted gene, 24133
1	gene	36.691449	36.693681	positive	MGI_C57BL6J_88475	Cox5b	NCBI_Gene:12859,ENSEMBL:ENSMUSG00000061518	MGI:88475	protein coding gene	cytochrome c oxidase subunit 5B
1	gene	36.698114	36.714422	negative	MGI_C57BL6J_1917446	Actr1b	NCBI_Gene:226977,ENSEMBL:ENSMUSG00000037351	MGI:1917446	protein coding gene	ARP1 actin-related protein 1B, centractin beta
1	gene	36.710149	36.757960	positive	MGI_C57BL6J_1918416	4933424G06Rik	NCBI_Gene:71166,ENSEMBL:ENSMUSG00000102416	MGI:1918416	lncRNA gene	RIKEN cDNA 4933424G06 gene
1	gene	36.714602	36.744792	negative	MGI_C57BL6J_5592692	Gm33533	NCBI_Gene:102636476,ENSEMBL:ENSMUSG00000104237	MGI:5592692	lncRNA gene	predicted gene, 33533
1	gene	36.761798	36.782821	positive	MGI_C57BL6J_99613	Zap70	NCBI_Gene:22637,ENSEMBL:ENSMUSG00000026117	MGI:99613	protein coding gene	zeta-chain (TCR) associated protein kinase
1	pseudogene	36.764863	36.765883	negative	MGI_C57BL6J_5011013	Gm18828	NCBI_Gene:100417791,ENSEMBL:ENSMUSG00000097291	MGI:5011013	pseudogene	predicted gene, 18828
1	gene	36.792189	36.943666	negative	MGI_C57BL6J_1927110	Tmem131	NCBI_Gene:56030,ENSEMBL:ENSMUSG00000026116	MGI:1927110	protein coding gene	transmembrane protein 131
1	gene	36.871903	36.872045	negative	MGI_C57BL6J_5610734	Gm37506	ENSEMBL:ENSMUSG00000103016	MGI:5610734	unclassified gene	predicted gene, 37506
1	gene	36.913601	36.916539	negative	MGI_C57BL6J_5611343	Gm38115	ENSEMBL:ENSMUSG00000102930	MGI:5611343	lncRNA gene	predicted gene, 38115
1	gene	36.922797	36.926348	negative	MGI_C57BL6J_3641781	F830112A20Rik	ENSEMBL:ENSMUSG00000103159	MGI:3641781	protein coding gene	RIKEN cDNA F830112A20 gene
1	pseudogene	36.957886	36.958516	negative	MGI_C57BL6J_3646154	Rpl12-ps1	NCBI_Gene:241053,ENSEMBL:ENSMUSG00000080054	MGI:3646154	pseudogene	ribosomal protein L12, pseudogene 1
1	gene	37.005439	37.005557	positive	MGI_C57BL6J_4422075	n-R5s210	ENSEMBL:ENSMUSG00000095944	MGI:4422075	rRNA gene	nuclear encoded rRNA 5S 210
1	gene	37.026596	37.187613	positive	MGI_C57BL6J_1918103	Vwa3b	NCBI_Gene:70853,ENSEMBL:ENSMUSG00000050122	MGI:1918103	protein coding gene	von Willebrand factor A domain containing 3B
1	gene	37.042567	37.046351	negative	MGI_C57BL6J_5622511	Gm39626	NCBI_Gene:105243906	MGI:5622511	lncRNA gene	predicted gene, 39626
1	gene	37.132273	37.150509	negative	MGI_C57BL6J_5610248	Gm37020	NCBI_Gene:105243905,ENSEMBL:ENSMUSG00000103603	MGI:5610248	lncRNA gene	predicted gene, 37020
1	gene	37.214434	37.263384	positive	MGI_C57BL6J_1341818	Cnga3	NCBI_Gene:12790,ENSEMBL:ENSMUSG00000026114	MGI:1341818	protein coding gene	cyclic nucleotide gated channel alpha 3
1	gene	37.299352	37.299697	negative	MGI_C57BL6J_1920732	1700074A21Rik	ENSEMBL:ENSMUSG00000102231	MGI:1920732	unclassified gene	RIKEN cDNA 1700074A21 gene
1	gene	37.299838	37.410740	positive	MGI_C57BL6J_1931123	Inpp4a	NCBI_Gene:269180,ENSEMBL:ENSMUSG00000026113	MGI:1931123	protein coding gene	inositol polyphosphate-4-phosphatase, type I
1	gene	37.328916	37.334216	negative	MGI_C57BL6J_1925369	4930439A04Rik	NCBI_Gene:78119,ENSEMBL:ENSMUSG00000086064	MGI:1925369	lncRNA gene	RIKEN cDNA 4930439A04 gene
1	gene	37.330971	37.331504	negative	MGI_C57BL6J_5610363	Gm37135	ENSEMBL:ENSMUSG00000102879	MGI:5610363	unclassified gene	predicted gene, 37135
1	gene	37.417084	37.430103	negative	MGI_C57BL6J_1923428	Coa5	NCBI_Gene:76178,ENSEMBL:ENSMUSG00000026112	MGI:1923428	protein coding gene	cytochrome C oxidase assembly factor 5
1	gene	37.430139	37.439124	positive	MGI_C57BL6J_1914637	Unc50	NCBI_Gene:67387,ENSEMBL:ENSMUSG00000026111	MGI:1914637	protein coding gene	unc-50 homolog
1	gene	37.439340	37.541047	negative	MGI_C57BL6J_2662992	Mgat4a	NCBI_Gene:269181,ENSEMBL:ENSMUSG00000026110	MGI:2662992	protein coding gene	mannoside acetylglucosaminyltransferase 4, isoenzyme A
1	pseudogene	37.485851	37.488605	negative	MGI_C57BL6J_1924883	4930594C11Rik	NCBI_Gene:77633,ENSEMBL:ENSMUSG00000103948	MGI:1924883	pseudogene	RIKEN cDNA 4930594C11 gene
1	pseudogene	37.487193	37.488982	negative	MGI_C57BL6J_5663350	Gm43213	ENSEMBL:ENSMUSG00000087233	MGI:5663350	pseudogene	predicted gene 43213
1	gene	37.499037	37.499941	negative	MGI_C57BL6J_5622512	Gm39627	NCBI_Gene:105243907	MGI:5622512	lncRNA gene	predicted gene, 39627
1	gene	37.611676	37.720090	negative	MGI_C57BL6J_1919347	2010300C02Rik	NCBI_Gene:72097,ENSEMBL:ENSMUSG00000026090	MGI:1919347	protein coding gene	RIKEN cDNA 2010300C02 gene
1	gene	37.614259	37.615373	positive	MGI_C57BL6J_1922520	4930556I23Rik	NCBI_Gene:102637491,ENSEMBL:ENSMUSG00000089767	MGI:1922520	lncRNA gene	RIKEN cDNA 4930556I23 gene
1	gene	37.653241	37.671961	positive	MGI_C57BL6J_1923057	4930470B04Rik	NCBI_Gene:102637336,ENSEMBL:ENSMUSG00000104365	MGI:1923057	lncRNA gene	RIKEN cDNA 4930470B04 gene
1	gene	37.684600	37.696393	positive	MGI_C57BL6J_5622513	Gm39628	NCBI_Gene:105243908	MGI:5622513	lncRNA gene	predicted gene, 39628
1	gene	37.694447	37.696664	negative	MGI_C57BL6J_5012048	Gm19863	ENSEMBL:ENSMUSG00000102650	MGI:5012048	unclassified gene	predicted gene, 19863
1	gene	37.754570	37.866737	negative	MGI_C57BL6J_2685063	Tsga10	NCBI_Gene:211484,ENSEMBL:ENSMUSG00000060771	MGI:2685063	protein coding gene	testis specific 10
1	gene	37.865299	37.871388	positive	MGI_C57BL6J_5477299	Gm26805	ENSEMBL:ENSMUSG00000097268	MGI:5477299	lncRNA gene	predicted gene, 26805
1	gene	37.868513	37.876298	positive	MGI_C57BL6J_3645211	Lipt1	NCBI_Gene:623661,ENSEMBL:ENSMUSG00000037216	MGI:3645211	protein coding gene	lipoyltransferase 1
1	gene	37.874801	37.890442	negative	MGI_C57BL6J_1916278	Mitd1	NCBI_Gene:69028,ENSEMBL:ENSMUSG00000026088	MGI:1916278	protein coding gene	MIT, microtubule interacting and transport, domain containing 1
1	gene	37.890471	37.898535	positive	MGI_C57BL6J_1333820	Mrpl30	NCBI_Gene:107734,ENSEMBL:ENSMUSG00000026087	MGI:1333820	protein coding gene	mitochondrial ribosomal protein L30
1	gene	37.905923	37.916493	negative	MGI_C57BL6J_2685622	Lyg2	NCBI_Gene:332427,ENSEMBL:ENSMUSG00000061584	MGI:2685622	protein coding gene	lysozyme G-like 2
1	gene	37.933596	37.954136	positive	MGI_C57BL6J_3705190	Gm15457	ENSEMBL:ENSMUSG00000087374	MGI:3705190	lncRNA gene	predicted gene 15457
1	gene	37.946736	37.957759	negative	MGI_C57BL6J_1916791	Lyg1	NCBI_Gene:69541,ENSEMBL:ENSMUSG00000026085	MGI:1916791	protein coding gene	lysozyme G-like 1
1	gene	37.973967	37.974203	positive	MGI_C57BL6J_5453186	Gm23409	ENSEMBL:ENSMUSG00000089141	MGI:5453186	unclassified non-coding RNA gene	predicted gene, 23409
1	gene	37.983867	37.997893	negative	MGI_C57BL6J_2138153	Txndc9	NCBI_Gene:98258,ENSEMBL:ENSMUSG00000058407	MGI:2138153	protein coding gene	thioredoxin domain containing 9
1	gene	37.998010	38.055579	positive	MGI_C57BL6J_2441772	Eif5b	NCBI_Gene:226982,ENSEMBL:ENSMUSG00000026083	MGI:2441772	protein coding gene	eukaryotic translation initiation factor 5B
1	gene	38.013854	38.016925	positive	MGI_C57BL6J_2445101	B230213L16Rik	NA	NA	protein coding gene	RIKEN cDNA B230213L16 gene
1	gene	38.023490	38.030460	negative	MGI_C57BL6J_5593607	Gm34448	NCBI_Gene:102637707	MGI:5593607	lncRNA gene	predicted gene, 34448
1	gene	38.052786	38.129920	negative	MGI_C57BL6J_1929074	Rev1	NCBI_Gene:56210,ENSEMBL:ENSMUSG00000026082	MGI:1929074	protein coding gene	REV1, DNA directed polymerase
1	gene	38.076295	38.077305	negative	MGI_C57BL6J_5610290	Gm37062	ENSEMBL:ENSMUSG00000103804	MGI:5610290	lncRNA gene	predicted gene, 37062
1	gene	38.132083	38.159892	positive	MGI_C57BL6J_3644917	Gm5099	NCBI_Gene:329123,ENSEMBL:ENSMUSG00000102716	MGI:3644917	lncRNA gene	predicted gene 5099
1	gene	38.175393	38.664955	negative	MGI_C57BL6J_106927	Aff3	NCBI_Gene:16764,ENSEMBL:ENSMUSG00000037138	MGI:106927	protein coding gene	AF4/FMR2 family, member 3
1	gene	38.232302	38.247651	positive	MGI_C57BL6J_3801827	Gm16150	NCBI_Gene:102638318,ENSEMBL:ENSMUSG00000085391	MGI:3801827	lncRNA gene	predicted gene 16150
1	gene	38.247932	38.249270	negative	MGI_C57BL6J_1923925	5330403D14Rik	NA	NA	unclassified gene	RIKEN cDNA 5330403D14 gene
1	gene	38.305466	38.308430	negative	MGI_C57BL6J_3028063	6030495B02Rik	NA	NA	unclassified gene	RIKEN cDNA 6030495B02 gene
1	gene	38.307902	38.311930	positive	MGI_C57BL6J_3801826	Gm16151	ENSEMBL:ENSMUSG00000085280	MGI:3801826	lncRNA gene	predicted gene 16151
1	gene	38.322246	38.322499	negative	MGI_C57BL6J_1925648	2900002H24Rik	NA	NA	unclassified gene	RIKEN cDNA 2900002H24 gene
1	gene	38.384949	38.393974	positive	MGI_C57BL6J_3802058	Gm16152	ENSEMBL:ENSMUSG00000087131	MGI:3802058	lncRNA gene	predicted gene 16152
1	pseudogene	38.472197	38.488148	positive	MGI_C57BL6J_5593886	Gm34727	NCBI_Gene:108167619,ENSEMBL:ENSMUSG00000102984	MGI:5593886	pseudogene	predicted gene, 34727

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
2	pseudogene	7.631076	7.631348	positive	MGI_C57BL6J_3651020	Gm13210	ENSEMBL:ENSMUSG00000083252	MGI:3651020	pseudogene	predicted gene 13210
2	gene	7.716151	7.781408	negative	MGI_C57BL6J_3651019	Gm13211	ENSEMBL:ENSMUSG00000085070	MGI:3651019	lncRNA gene	predicted gene 13211
2	pseudogene	8.147200	8.147865	negative	MGI_C57BL6J_3652190	Gm13254	NCBI_Gene:101055923,ENSEMBL:ENSMUSG00000083269	MGI:3652190	pseudogene	predicted gene 13254
2	gene	8.337502	8.345328	negative	MGI_C57BL6J_5590063	Gm30904	NCBI_Gene:102632962	MGI:5590063	lncRNA gene	predicted gene, 30904
2	gene	8.472094	8.472384	negative	MGI_C57BL6J_5454311	Gm24534	ENSEMBL:ENSMUSG00000088574	MGI:5454311	unclassified non-coding RNA gene	predicted gene, 24534
2	pseudogene	8.476486	8.477153	positive	MGI_C57BL6J_5010906	Gm18721	NCBI_Gene:100417623	MGI:5010906	pseudogene	predicted gene, 18721
2	pseudogene	8.633937	8.634483	positive	MGI_C57BL6J_3652189	Gm13255	ENSEMBL:ENSMUSG00000084374	MGI:3652189	pseudogene	predicted gene 13255
2	pseudogene	8.829240	8.830394	positive	MGI_C57BL6J_5010619	Gm18434	NCBI_Gene:100417167	MGI:5010619	pseudogene	predicted gene, 18434
2	gene	8.946890	8.975866	positive	MGI_C57BL6J_5590116	Gm30957	NCBI_Gene:102633034	MGI:5590116	lncRNA gene	predicted gene, 30957
2	gene	9.034201	9.035204	negative	MGI_C57BL6J_3641821	Gm10854	NA	NA	protein coding gene	predicted gene 10854
2	pseudogene	9.041120	9.042484	negative	MGI_C57BL6J_3649713	Gm13217	NCBI_Gene:100417571,ENSEMBL:ENSMUSG00000082953	MGI:3649713	pseudogene	predicted gene 13217
2	gene	9.189515	9.197484	positive	MGI_C57BL6J_1920688	1700061F12Rik	NCBI_Gene:73438,ENSEMBL:ENSMUSG00000085580	MGI:1920688	lncRNA gene	RIKEN cDNA 1700061F12 gene
2	gene	9.240756	9.240832	negative	MGI_C57BL6J_5453740	Gm23963	ENSEMBL:ENSMUSG00000095951	MGI:5453740	miRNA gene	predicted gene, 23963
2	pseudogene	9.270080	9.270509	negative	MGI_C57BL6J_3651692	Gm13221	ENSEMBL:ENSMUSG00000083423	MGI:3651692	pseudogene	predicted gene 13221
2	gene	9.352413	9.467458	positive	MGI_C57BL6J_3651678	Gm13219	NCBI_Gene:100040710,ENSEMBL:ENSMUSG00000079604	MGI:3651678	lncRNA gene	predicted gene 13219
2	pseudogene	9.575836	9.576343	positive	MGI_C57BL6J_3651907	Gm13220	ENSEMBL:ENSMUSG00000081202	MGI:3651907	pseudogene	predicted gene 13220
2	gene	9.591218	9.597843	negative	MGI_C57BL6J_3651679	Gm13218	NCBI_Gene:108168828,ENSEMBL:ENSMUSG00000079603	MGI:3651679	lncRNA gene	predicted gene 13218
2	gene	9.630646	9.631341	negative	MGI_C57BL6J_5611094	Gm37866	ENSEMBL:ENSMUSG00000104276	MGI:5611094	unclassified gene	predicted gene, 37866
2	gene	9.830298	9.831243	negative	MGI_C57BL6J_1922500	4930554D03Rik	NA	NA	unclassified gene	RIKEN cDNA 4930554D03 gene
2	gene	9.857078	9.890034	negative	MGI_C57BL6J_95663	Gata3	NCBI_Gene:14462,ENSEMBL:ENSMUSG00000015619	MGI:95663	protein coding gene	GATA binding protein 3
2	gene	9.877256	9.878869	positive	MGI_C57BL6J_3651464	Gm13256	ENSEMBL:ENSMUSG00000086618	MGI:3651464	lncRNA gene	predicted gene 13256
2	gene	9.881246	9.886767	positive	MGI_C57BL6J_1921185	4930412O13Rik	NCBI_Gene:381347,ENSEMBL:ENSMUSG00000025783	MGI:1921185	protein coding gene	RIKEN cDNA 4930412O13 gene
2	gene	9.883041	9.889540	negative	MGI_C57BL6J_1924932	9230102O04Rik	NCBI_Gene:77682,ENSEMBL:ENSMUSG00000079602	MGI:1924932	protein coding gene	RIKEN cDNA 9230102O04 gene
2	gene	9.906151	9.917991	positive	MGI_C57BL6J_3703165	Gm13262	NCBI_Gene:100126244,ENSEMBL:ENSMUSG00000075534	MGI:3703165	lncRNA gene	predicted gene 13262
2	gene	9.914552	10.048609	negative	MGI_C57BL6J_2388097	Taf3	NCBI_Gene:209361,ENSEMBL:ENSMUSG00000025782	MGI:2388097	protein coding gene	TATA-box binding protein associated factor 3
2	gene	9.918177	9.922384	positive	MGI_C57BL6J_5590449	Gm31290	NCBI_Gene:102633474	MGI:5590449	lncRNA gene	predicted gene, 31290
2	pseudogene	9.965785	9.968453	positive	MGI_C57BL6J_5590359	Gm31200	NCBI_Gene:105244080	MGI:5590359	pseudogene	predicted gene, 31200
2	gene	10.047838	10.049519	positive	MGI_C57BL6J_3642399	C630004M23Rik	ENSEMBL:ENSMUSG00000103570	MGI:3642399	unclassified gene	RIKEN cDNA C630004M23 gene
2	gene	10.056016	10.080518	negative	MGI_C57BL6J_1261437	Atp5c1	NCBI_Gene:11949,ENSEMBL:ENSMUSG00000025781	MGI:1261437	protein coding gene	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
2	gene	10.075653	10.075780	negative	MGI_C57BL6J_5453385	Gm23608	ENSEMBL:ENSMUSG00000077733	MGI:5453385	snoRNA gene	predicted gene, 23608
2	gene	10.080593	10.092806	positive	MGI_C57BL6J_96676	Kin	NCBI_Gene:16588,ENSEMBL:ENSMUSG00000037262	MGI:96676	protein coding gene	Kin17 DNA and RNA binding protein
2	gene	10.094591	10.131396	negative	MGI_C57BL6J_96619	Itih2	NCBI_Gene:16425,ENSEMBL:ENSMUSG00000037254	MGI:96619	protein coding gene	inter-alpha trypsin inhibitor, heavy chain 2
2	gene	10.153536	10.256529	positive	MGI_C57BL6J_1925751	Itih5	NCBI_Gene:209378,ENSEMBL:ENSMUSG00000025780	MGI:1925751	protein coding gene	inter-alpha (globulin) inhibitor H5
2	gene	10.276439	10.277418	positive	MGI_C57BL6J_1917724	5730405A10Rik	NA	NA	unclassified gene	RIKEN cDNA 5730405A10 gene
2	gene	10.305663	10.307590	negative	MGI_C57BL6J_5590655	Gm31496	NCBI_Gene:102633743	MGI:5590655	lncRNA gene	predicted gene, 31496
2	gene	10.317088	10.320201	negative	MGI_C57BL6J_5622643	Gm39758	NCBI_Gene:105244081	MGI:5622643	lncRNA gene	predicted gene, 39758
2	gene	10.327340	10.374041	negative	MGI_C57BL6J_3650831	Gm13261	NCBI_Gene:102633824,ENSEMBL:ENSMUSG00000086748	MGI:3650831	lncRNA gene	predicted gene 13261
2	gene	10.370437	10.595253	positive	MGI_C57BL6J_2447794	Sfmbt2	NCBI_Gene:353282,ENSEMBL:ENSMUSG00000061186	MGI:2447794	protein coding gene	Scm-like with four mbt domains 2
2	gene	10.465287	10.465407	positive	MGI_C57BL6J_5451849	Gm22072	ENSEMBL:ENSMUSG00000080500	MGI:5451849	miRNA gene	predicted gene, 22072
2	gene	10.465760	10.465867	positive	MGI_C57BL6J_5452454	Gm22677	ENSEMBL:ENSMUSG00000080627	MGI:5452454	miRNA gene	predicted gene, 22677
2	gene	10.466663	10.466746	positive	MGI_C57BL6J_4834277	Mir466m	miRBase:MI0014050,NCBI_Gene:100526481,ENSEMBL:ENSMUSG00000092793	MGI:4834277	miRNA gene	microRNA 466m
2	gene	10.466944	10.467037	positive	MGI_C57BL6J_3718533	Mir466f-1	miRBase:MI0005507,NCBI_Gene:100124486,ENSEMBL:ENSMUSG00000077972	MGI:3718533	miRNA gene	microRNA 466f-1
2	gene	10.467229	10.467349	positive	MGI_C57BL6J_3783384	Mir669f	miRBase:MI0006287,NCBI_Gene:100316667,ENSEMBL:ENSMUSG00000077038	MGI:3783384	miRNA gene	microRNA 669f
2	gene	10.467495	10.467613	positive	MGI_C57BL6J_3783383	Mir669e	miRBase:MI0006300,NCBI_Gene:100316806,ENSEMBL:ENSMUSG00000080653	MGI:3783383	miRNA gene	microRNA 669e
2	gene	10.467790	10.467886	positive	MGI_C57BL6J_3629607	Mir669b	miRBase:MI0004666,NCBI_Gene:735255,ENSEMBL:ENSMUSG00000076126	MGI:3629607	miRNA gene	microRNA 669b
2	gene	10.468069	10.468172	positive	MGI_C57BL6J_5453355	Gm23578	ENSEMBL:ENSMUSG00000077131	MGI:5453355	miRNA gene	predicted gene, 23578
2	gene	10.468343	10.468463	positive	MGI_C57BL6J_3783382	Mir669d	miRBase:MI0006281,NCBI_Gene:100316664,ENSEMBL:ENSMUSG00000077834	MGI:3783382	miRNA gene	microRNA 669d
2	gene	10.468675	10.468768	positive	MGI_C57BL6J_3718534	Mir466f-2	miRBase:MI0005508,NCBI_Gene:100124445,ENSEMBL:ENSMUSG00000077998	MGI:3718534	miRNA gene	microRNA 466f-2
2	gene	10.468971	10.469068	positive	MGI_C57BL6J_3837025	Mir669l	miRBase:MI0009942,NCBI_Gene:100316815,ENSEMBL:ENSMUSG00000076959	MGI:3837025	miRNA gene	microRNA 669l
2	gene	10.471644	10.471729	positive	MGI_C57BL6J_4834278	Mir669d-2	miRBase:MI0014051,NCBI_Gene:100526550,ENSEMBL:ENSMUSG00000080504	MGI:4834278	miRNA gene	microRNA 669d-2
2	gene	10.471953	10.472046	positive	MGI_C57BL6J_3718535	Mir466f-3	miRBase:MI0005509,NCBI_Gene:100124475,ENSEMBL:ENSMUSG00000077981	MGI:3718535	miRNA gene	microRNA 466f-3
2	gene	10.472254	10.472343	positive	MGI_C57BL6J_5453891	Mir297a-2	miRBase:MI0000397,NCBI_Gene:723945,ENSEMBL:ENSMUSG00000076983	MGI:5453891	miRNA gene	microRNA 297a-2
2	gene	10.472540	10.472623	positive	MGI_C57BL6J_4834279	Mir466o	miRBase:MI0014052,NCBI_Gene:100526482,ENSEMBL:ENSMUSG00000078026	MGI:4834279	miRNA gene	microRNA 466o
2	gene	10.473351	10.473477	positive	MGI_C57BL6J_5455850	Gm26073	ENSEMBL:ENSMUSG00000094165	MGI:5455850	miRNA gene	predicted gene, 26073
2	gene	10.473931	10.474027	positive	MGI_C57BL6J_3718539	Mir467c	miRBase:MI0005512,NCBI_Gene:100124487,ENSEMBL:ENSMUSG00000077049	MGI:3718539	miRNA gene	microRNA 467c
2	gene	10.474219	10.474300	positive	MGI_C57BL6J_3718526	Mir466b-1	miRBase:MI0005502,NCBI_Gene:100124485,ENSEMBL:ENSMUSG00000106608	MGI:3718526	miRNA gene	microRNA 466b-1
2	gene	10.474433	10.474541	positive	MGI_C57BL6J_3629609	Mir669a-3	miRBase:MI0004668,NCBI_Gene:735272,ENSEMBL:ENSMUSG00000076028	MGI:3629609	miRNA gene	microRNA 669a-3
2	gene	10.475300	10.475426	positive	MGI_C57BL6J_3783389	Mir669k	miRBase:MI0006279,NCBI_Gene:100316663,ENSEMBL:ENSMUSG00000094297	MGI:3783389	miRNA gene	microRNA 669k
2	gene	10.475500	10.475620	positive	MGI_C57BL6J_5456268	Gm26491	ENSEMBL:ENSMUSG00000095843	MGI:5456268	miRNA gene	predicted gene, 26491
2	gene	10.476346	10.476418	positive	MGI_C57BL6J_3629612	Mir467a-1	miRBase:MI0002402,NCBI_Gene:735286,ENSEMBL:ENSMUSG00000096624	MGI:3629612	miRNA gene	microRNA 467a-1
2	gene	10.476628	10.476713	positive	MGI_C57BL6J_4834333	Mir466b-8	miRBase:MI0014112,NCBI_Gene:100526561,ENSEMBL:ENSMUSG00000095269	MGI:4834333	miRNA gene	microRNA 466b-8
2	gene	10.476853	10.476949	positive	MGI_C57BL6J_3629611	Mir669a-1	miRBase:MI0004523,NCBI_Gene:735256,ENSEMBL:ENSMUSG00000096583	MGI:3629611	miRNA gene	microRNA 669a-1
2	gene	10.477150	10.477272	positive	MGI_C57BL6J_3783385	Mir669g	miRBase:MI0006280,NCBI_Gene:100316802,ENSEMBL:ENSMUSG00000080459	MGI:3783385	miRNA gene	microRNA 669g
2	gene	10.477710	10.477836	positive	MGI_C57BL6J_5455478	Gm25701	ENSEMBL:ENSMUSG00000095938	MGI:5455478	miRNA gene	predicted gene, 25701
2	gene	10.477910	10.478030	positive	MGI_C57BL6J_3783388	Mir669j	miRBase:MI0006286,NCBI_Gene:100316770,ENSEMBL:ENSMUSG00000095340	MGI:3783388	miRNA gene	microRNA 669j
2	gene	10.478798	10.478880	positive	MGI_C57BL6J_3719571	Mir467a-2	miRBase:MI0014053,NCBI_Gene:100124624,ENSEMBL:ENSMUSG00000096027	MGI:3719571	miRNA gene	microRNA 467a-2
2	gene	10.479088	10.479171	positive	MGI_C57BL6J_3719617	Mir466e	miRBase:MI0005506,NCBI_Gene:100124640,ENSEMBL:ENSMUSG00000104933	MGI:3719617	miRNA gene	microRNA 466e
2	gene	10.479315	10.479401	positive	MGI_C57BL6J_4834281	Mir669a-4	miRBase:MI0014054,NCBI_Gene:100526535,ENSEMBL:ENSMUSG00000105546	MGI:4834281	miRNA gene	microRNA 669a-4
2	gene	10.480165	10.480291	positive	MGI_C57BL6J_5454092	Gm24315	ENSEMBL:ENSMUSG00000095336	MGI:5454092	miRNA gene	predicted gene, 24315
2	gene	10.480365	10.480485	positive	MGI_C57BL6J_5455228	Gm25451	ENSEMBL:ENSMUSG00000094190	MGI:5455228	miRNA gene	predicted gene, 25451
2	gene	10.481248	10.481320	positive	MGI_C57BL6J_3629617	Mir467b	miRBase:MI0004671,NCBI_Gene:735257,ENSEMBL:ENSMUSG00000095509	MGI:3629617	miRNA gene	microRNA 467b
2	gene	10.481534	10.481617	positive	MGI_C57BL6J_3718530	Mir466c-1	miRBase:MI0005505,NCBI_Gene:100124443,ENSEMBL:ENSMUSG00000104561	MGI:3718530	miRNA gene	microRNA 466c-1
2	gene	10.481761	10.481847	positive	MGI_C57BL6J_4834282	Mir669a-5	miRBase:MI0014055,NCBI_Gene:100526483,ENSEMBL:ENSMUSG00000104734	MGI:4834282	miRNA gene	microRNA 669a-5
2	gene	10.482612	10.482738	positive	MGI_C57BL6J_5454538	Gm24761	ENSEMBL:ENSMUSG00000094927	MGI:5454538	miRNA gene	predicted gene, 24761
2	gene	10.482812	10.482931	positive	MGI_C57BL6J_5453428	Gm23651	ENSEMBL:ENSMUSG00000080405	MGI:5453428	miRNA gene	predicted gene, 23651
2	gene	10.483678	10.483760	positive	MGI_C57BL6J_3719572	Mir467a-3	miRBase:MI0014056,NCBI_Gene:100124642,ENSEMBL:ENSMUSG00000095198	MGI:3719572	miRNA gene	microRNA 467a-3
2	gene	10.483966	10.484055	positive	MGI_C57BL6J_3720016	Mir466c-2	miRBase:MI0014057,NCBI_Gene:100124668,ENSEMBL:ENSMUSG00000094659	MGI:3720016	miRNA gene	microRNA 466c-2
2	gene	10.484196	10.484282	positive	MGI_C57BL6J_4834283	Mir669a-6	miRBase:MI0014058,NCBI_Gene:100526485,ENSEMBL:ENSMUSG00000105330	MGI:4834283	miRNA gene	microRNA 669a-6
2	gene	10.484490	10.484613	positive	MGI_C57BL6J_5452885	Gm23108	ENSEMBL:ENSMUSG00000096264	MGI:5452885	miRNA gene	predicted gene, 23108
2	gene	10.485051	10.485176	positive	MGI_C57BL6J_5455457	Gm25680	ENSEMBL:ENSMUSG00000096651	MGI:5455457	miRNA gene	predicted gene, 25680
2	gene	10.485250	10.485369	positive	MGI_C57BL6J_5452552	Gm22775	ENSEMBL:ENSMUSG00000094101	MGI:5452552	miRNA gene	predicted gene, 22775
2	gene	10.486135	10.486217	positive	MGI_C57BL6J_3719573	Mir467a-4	miRBase:MI0014059,NCBI_Gene:100124625,ENSEMBL:ENSMUSG00000096492	MGI:3719573	miRNA gene	microRNA 467a-4
2	gene	10.486423	10.486512	positive	MGI_C57BL6J_4834285	Mir466b-4	miRBase:MI0014060,NCBI_Gene:100526486,ENSEMBL:ENSMUSG00000096239	MGI:4834285	miRNA gene	microRNA 466b-4
2	gene	10.486653	10.486739	positive	MGI_C57BL6J_4834286	Mir669a-7	miRBase:MI0014061,NCBI_Gene:100526536,ENSEMBL:ENSMUSG00000106027	MGI:4834286	miRNA gene	microRNA 669a-7
2	gene	10.486946	10.487068	positive	MGI_C57BL6J_5455837	Gm26060	ENSEMBL:ENSMUSG00000094363	MGI:5455837	miRNA gene	predicted gene, 26060
2	gene	10.487507	10.487633	positive	MGI_C57BL6J_5456208	Gm26431	ENSEMBL:ENSMUSG00000095884	MGI:5456208	miRNA gene	predicted gene, 26431
2	gene	10.487704	10.487824	positive	MGI_C57BL6J_5456006	Gm26229	ENSEMBL:ENSMUSG00000094506	MGI:5456006	miRNA gene	predicted gene, 26229
2	gene	10.488599	10.488681	positive	MGI_C57BL6J_3719574	Mir467a-5	miRBase:MI0014062,NCBI_Gene:100124626,ENSEMBL:ENSMUSG00000094159	MGI:3719574	miRNA gene	microRNA 467a-5
2	gene	10.488887	10.488974	positive	MGI_C57BL6J_4834360	Mir466b-5	miRBase:MI0014063,NCBI_Gene:100526488,ENSEMBL:ENSMUSG00000096113	MGI:4834360	miRNA gene	microRNA 466b-5
2	gene	10.489116	10.489202	positive	MGI_C57BL6J_4834287	Mir669p-1	miRBase:MI0014064,NCBI_Gene:100526552,ENSEMBL:ENSMUSG00000096134	MGI:4834287	miRNA gene	microRNA 669p-1
2	gene	10.489410	10.489533	positive	MGI_C57BL6J_5453944	Gm24167	ENSEMBL:ENSMUSG00000094009	MGI:5453944	miRNA gene	predicted gene, 24167
2	gene	10.489971	10.490096	positive	MGI_C57BL6J_5454417	Gm24640	ENSEMBL:ENSMUSG00000096782	MGI:5454417	miRNA gene	predicted gene, 24640
2	gene	10.490167	10.490287	positive	MGI_C57BL6J_5453065	Gm23288	ENSEMBL:ENSMUSG00000096835	MGI:5453065	miRNA gene	predicted gene, 23288
2	gene	10.491048	10.491130	positive	MGI_C57BL6J_3719576	Mir467a-6	miRBase:MI0014065,NCBI_Gene:100124627,ENSEMBL:ENSMUSG00000096587	MGI:3719576	miRNA gene	microRNA 467a-6
2	gene	10.491336	10.491425	positive	MGI_C57BL6J_5455062	Gm25285	NCBI_Gene:104797374,ENSEMBL:ENSMUSG00000095536	MGI:5455062	miRNA gene	predicted gene, 25285
2	gene	10.491566	10.491652	positive	MGI_C57BL6J_4834288	Mir669a-8	miRBase:MI0014066,NCBI_Gene:100526489,ENSEMBL:ENSMUSG00000104652	MGI:4834288	miRNA gene	microRNA 669a-8
2	gene	10.491860	10.491983	positive	MGI_C57BL6J_5454450	Gm24673	ENSEMBL:ENSMUSG00000095786	MGI:5454450	miRNA gene	predicted gene, 24673
2	gene	10.492421	10.492546	positive	MGI_C57BL6J_5452412	Gm22635	ENSEMBL:ENSMUSG00000096748	MGI:5452412	miRNA gene	predicted gene, 22635
2	gene	10.492620	10.492739	positive	MGI_C57BL6J_5453346	Gm23569	ENSEMBL:ENSMUSG00000096880	MGI:5453346	miRNA gene	predicted gene, 23569
2	gene	10.493510	10.493592	positive	MGI_C57BL6J_3719577	Mir467a-7	miRBase:MI0014069,NCBI_Gene:100526553,ENSEMBL:ENSMUSG00000094688	MGI:3719577	miRNA gene	microRNA 467a-7
2	gene	10.493798	10.493887	positive	MGI_C57BL6J_4834289	Mir466b-6	miRBase:MI0014067,NCBI_Gene:100526490,ENSEMBL:ENSMUSG00000094261	MGI:4834289	miRNA gene	microRNA 466b-6
2	gene	10.494028	10.494114	positive	MGI_C57BL6J_4834290	Mir669a-9	miRBase:MI0014068,NCBI_Gene:100526491,ENSEMBL:ENSMUSG00000105182	MGI:4834290	miRNA gene	microRNA 4669a-9
2	gene	10.494321	10.494443	positive	MGI_C57BL6J_5456203	Gm26426	ENSEMBL:ENSMUSG00000093995	MGI:5456203	miRNA gene	predicted gene, 26426
2	gene	10.494882	10.495008	positive	MGI_C57BL6J_5454265	Gm24488	ENSEMBL:ENSMUSG00000094709	MGI:5454265	miRNA gene	predicted gene, 24488
2	gene	10.495079	10.495199	positive	MGI_C57BL6J_5454935	Gm25158	ENSEMBL:ENSMUSG00000094067	MGI:5454935	miRNA gene	predicted gene, 25158
2	gene	10.495980	10.496062	positive	MGI_C57BL6J_3719578	Mir467a-8	miRBase:MI0014072,NCBI_Gene:100124643,ENSEMBL:ENSMUSG00000096512	MGI:3719578	miRNA gene	microRNA 467a-8
2	gene	10.496268	10.496355	positive	MGI_C57BL6J_4834291	Mir466b-7	miRBase:MI0014070,NCBI_Gene:100526492,ENSEMBL:ENSMUSG00000096360	MGI:4834291	miRNA gene	microRNA 466b-7
2	gene	10.496497	10.496583	positive	MGI_C57BL6J_4834292	Mir669p-2	miRBase:MI0014071,NCBI_Gene:100526538,ENSEMBL:ENSMUSG00000093900	MGI:4834292	miRNA gene	microRNA 669p-2
2	gene	10.496791	10.496914	positive	MGI_C57BL6J_5453805	Gm24028	ENSEMBL:ENSMUSG00000095151	MGI:5453805	miRNA gene	predicted gene, 24028
2	gene	10.497352	10.497477	positive	MGI_C57BL6J_5452403	Gm22626	ENSEMBL:ENSMUSG00000094457	MGI:5452403	miRNA gene	predicted gene, 22626
2	gene	10.497548	10.497668	positive	MGI_C57BL6J_5451943	Gm22166	ENSEMBL:ENSMUSG00000093914	MGI:5451943	miRNA gene	predicted gene, 22166
2	gene	10.498393	10.498475	positive	MGI_C57BL6J_4834294	Mir467a-9	miRBase:MI0014074,NCBI_Gene:100526554,ENSEMBL:ENSMUSG00000095222	MGI:4834294	miRNA gene	microRNA 467a-9
2	gene	10.498685	10.498766	positive	MGI_C57BL6J_3718528	Mir466b-2	miRBase:MI0005503,NCBI_Gene:100124442,ENSEMBL:ENSMUSG00000076966	MGI:3718528	miRNA gene	microRNA 466b-2
2	gene	10.498911	10.498997	positive	MGI_C57BL6J_4834293	Mir669a-10	miRBase:MI0014073,NCBI_Gene:100526494,ENSEMBL:ENSMUSG00000105365	MGI:4834293	miRNA gene	microRNA 669a-10
2	gene	10.499204	10.499326	positive	MGI_C57BL6J_5455933	Gm26156	ENSEMBL:ENSMUSG00000080649	MGI:5455933	miRNA gene	predicted gene, 26156
2	gene	10.499763	10.499889	positive	MGI_C57BL6J_5453348	Gm23571	ENSEMBL:ENSMUSG00000096889	MGI:5453348	miRNA gene	predicted gene, 23571
2	gene	10.499966	10.500083	positive	MGI_C57BL6J_5455093	Gm25316	ENSEMBL:ENSMUSG00000080476	MGI:5455093	miRNA gene	predicted gene, 25316
2	gene	10.500822	10.500904	positive	MGI_C57BL6J_5454799	Gm25022	ENSEMBL:ENSMUSG00000093907	MGI:5454799	miRNA gene	predicted gene, 25022
2	gene	10.501109	10.501198	positive	MGI_C57BL6J_5455720	Gm25943	ENSEMBL:ENSMUSG00000096053	MGI:5455720	miRNA gene	predicted gene, 25943
2	gene	10.501339	10.501425	positive	MGI_C57BL6J_4834295	Mir669a-11	miRBase:MI0014075,NCBI_Gene:100526495,ENSEMBL:ENSMUSG00000106488	MGI:4834295	miRNA gene	microRNA 669a-11
2	gene	10.501633	10.501754	positive	MGI_C57BL6J_5453765	Gm23988	ENSEMBL:ENSMUSG00000080684	MGI:5453765	miRNA gene	predicted gene, 23988
2	gene	10.502191	10.502317	positive	MGI_C57BL6J_5455450	Gm25673	ENSEMBL:ENSMUSG00000095051	MGI:5455450	miRNA gene	predicted gene, 25673
2	gene	10.502391	10.502511	positive	MGI_C57BL6J_5455530	Gm25753	ENSEMBL:ENSMUSG00000094943	MGI:5455530	miRNA gene	predicted gene, 25753
2	gene	10.503273	10.503355	positive	MGI_C57BL6J_4834296	Mir467a-10	miRBase:MI0014076,NCBI_Gene:100526539,ENSEMBL:ENSMUSG00000096894	MGI:4834296	miRNA gene	microRNA 467a-10
2	gene	10.503565	10.503645	positive	MGI_C57BL6J_3718529	Mir466b-3	miRBase:MI0005504,NCBI_Gene:100124474,ENSEMBL:ENSMUSG00000076994	MGI:3718529	miRNA gene	microRNA 466b-3
2	gene	10.503791	10.503877	positive	MGI_C57BL6J_4834297	Mir669a-12	miRBase:MI0014077,NCBI_Gene:100526496,ENSEMBL:ENSMUSG00000105783	MGI:4834297	miRNA gene	microRNA 669a-12
2	gene	10.504647	10.504773	positive	MGI_C57BL6J_5456175	Gm26398	ENSEMBL:ENSMUSG00000094327	MGI:5456175	miRNA gene	predicted gene, 26398
2	gene	10.505721	10.505807	positive	MGI_C57BL6J_3718541	Mir467e	miRBase:MI0006128,NCBI_Gene:100124448,ENSEMBL:ENSMUSG00000076948	MGI:3718541	miRNA gene	microRNA 467e
2	gene	10.506006	10.506094	positive	MGI_C57BL6J_4834298	Mir466p	miRBase:MI0014078,NCBI_Gene:100526497,ENSEMBL:ENSMUSG00000077113	MGI:4834298	miRNA gene	microRNA 466p
2	gene	10.506555	10.506681	positive	MGI_C57BL6J_5451828	Gm22051	ENSEMBL:ENSMUSG00000094330	MGI:5451828	miRNA gene	predicted gene, 22051
2	gene	10.506755	10.506855	positive	MGI_C57BL6J_5452455	Gm22678	ENSEMBL:ENSMUSG00000080624	MGI:5452455	miRNA gene	predicted gene, 22678
2	gene	10.507630	10.507714	positive	MGI_C57BL6J_3718540	Mir467d	miRBase:MI0005513,NCBI_Gene:100124447,ENSEMBL:ENSMUSG00000077021	MGI:3718540	miRNA gene	microRNA 467d
2	gene	10.507918	10.507990	positive	MGI_C57BL6J_3619454	Mir466	miRBase:MI0002401,NCBI_Gene:723922,ENSEMBL:ENSMUSG00000070099	MGI:3619454	miRNA gene	microRNA 466
2	gene	10.508453	10.508579	positive	MGI_C57BL6J_5451868	Gm22091	ENSEMBL:ENSMUSG00000080558	MGI:5451868	miRNA gene	predicted gene, 22091
2	gene	10.509016	10.509113	positive	MGI_C57BL6J_3718506	Mir297c	miRBase:MI0005492,NCBI_Gene:100124483,ENSEMBL:ENSMUSG00000076976	MGI:3718506	miRNA gene	microRNA 297c
2	gene	10.509296	10.509404	positive	MGI_C57BL6J_3629619	Mir669c	miRBase:MI0004673,NCBI_Gene:735273,ENSEMBL:ENSMUSG00000076118	MGI:3629619	miRNA gene	microRNA 669c
2	gene	10.509584	10.509687	positive	MGI_C57BL6J_5454119	Gm24342	ENSEMBL:ENSMUSG00000077095	MGI:5454119	miRNA gene	predicted gene, 24342
2	gene	10.509885	10.509984	positive	MGI_C57BL6J_5455040	Gm25263	ENSEMBL:ENSMUSG00000077104	MGI:5455040	miRNA gene	predicted gene, 25263
2	gene	10.510164	10.510260	positive	MGI_C57BL6J_3629622	Mir669a-2	miRBase:MI0004667,NCBI_Gene:735258,ENSEMBL:ENSMUSG00000076014	MGI:3629622	miRNA gene	microRNA 669a-2
2	gene	10.510461	10.510563	positive	MGI_C57BL6J_5452016	Gm22239	ENSEMBL:ENSMUSG00000092961	MGI:5452016	miRNA gene	predicted gene, 22239
2	gene	10.510791	10.510892	positive	MGI_C57BL6J_5452702	Gm22925	ENSEMBL:ENSMUSG00000092697	MGI:5452702	miRNA gene	predicted gene, 22925
2	gene	10.511370	10.511465	positive	MGI_C57BL6J_5453319	Gm23542	ENSEMBL:ENSMUSG00000088833	MGI:5453319	miRNA gene	predicted gene, 23542
2	gene	10.511667	10.511775	positive	MGI_C57BL6J_3629625	Mir297b	miRBase:MI0004674,NCBI_Gene:735281,ENSEMBL:ENSMUSG00000076222	MGI:3629625	miRNA gene	microRNA 297b
2	gene	10.511967	10.512062	positive	MGI_C57BL6J_3718531	Mir466d	miRBase:MI0005546,NCBI_Gene:100124465,ENSEMBL:ENSMUSG00000078031	MGI:3718531	miRNA gene	microRNA 466d
2	gene	10.512203	10.512299	positive	MGI_C57BL6J_5455869	Gm26092	ENSEMBL:ENSMUSG00000095699	MGI:5455869	miRNA gene	predicted gene, 26092
2	gene	10.512790	10.512887	positive	MGI_C57BL6J_3837026	Mir669m-1	miRBase:MI0009943,NCBI_Gene:100316701,ENSEMBL:ENSMUSG00000089570	MGI:3837026	miRNA gene	microRNA 669m-1
2	gene	10.513434	10.513531	positive	MGI_C57BL6J_3837027	Mir669m-2	miRBase:MI0009944,NCBI_Gene:100316834,ENSEMBL:ENSMUSG00000088980	MGI:3837027	miRNA gene	microRNA 669m-2
2	gene	10.513741	10.513834	positive	MGI_C57BL6J_4834299	Mir466n	miRBase:MI0014079,NCBI_Gene:100526524,ENSEMBL:ENSMUSG00000077991	MGI:4834299	miRNA gene	microRNA 466n
2	gene	10.514300	10.514395	positive	MGI_C57BL6J_3837028	Mir669o	miRBase:MI0009945,NCBI_Gene:100316702,ENSEMBL:ENSMUSG00000077086	MGI:3837028	miRNA gene	microRNA 669o
2	gene	10.514595	10.514674	positive	MGI_C57BL6J_3718536	Mir466g	miRBase:MI0005510,NCBI_Gene:100124495,ENSEMBL:ENSMUSG00000078025	MGI:3718536	miRNA gene	microRNA 466g
2	gene	10.514891	10.514971	positive	MGI_C57BL6J_3718537	Mir466h	miRBase:MI0005511,NCBI_Gene:100124446,ENSEMBL:ENSMUSG00000077941	MGI:3718537	miRNA gene	microRNA 466h
2	gene	10.515820	10.515921	positive	MGI_C57BL6J_3718465	Mir297a-3	miRBase:MI0005488,NCBI_Gene:100124482,ENSEMBL:ENSMUSG00000076956	MGI:3718465	miRNA gene	microRNA 297a-3
2	gene	10.516097	10.516217	positive	MGI_C57BL6J_3783378	Mir466l	miRBase:MI0006278,NCBI_Gene:100316769,ENSEMBL:ENSMUSG00000078060	MGI:3783378	miRNA gene	microRNA 466l
2	gene	10.517067	10.517164	positive	MGI_C57BL6J_3718466	Mir297a-4	miRBase:MI0005489,NCBI_Gene:100124435,ENSEMBL:ENSMUSG00000077954	MGI:3718466	miRNA gene	microRNA 297a-4
2	gene	10.517337	10.517426	positive	MGI_C57BL6J_5454583	Gm24806	ENSEMBL:ENSMUSG00000080686	MGI:5454583	miRNA gene	predicted gene, 24806
2	gene	10.517604	10.517730	positive	MGI_C57BL6J_3783387	Mir669i	miRBase:MI0006288,NCBI_Gene:100316668,ENSEMBL:ENSMUSG00000080657	MGI:3783387	miRNA gene	microRNA 669i
2	gene	10.518155	10.518279	positive	MGI_C57BL6J_3783386	Mir669h	miRBase:MI0006289,NCBI_Gene:100316831,ENSEMBL:ENSMUSG00000080594	MGI:3783386	miRNA gene	microRNA 669h
2	gene	10.715338	10.715369	positive	MGI_C57BL6J_3641823	Gm10852	NA	NA	protein coding gene	predicted gene 10852
2	gene	10.825745	10.828322	positive	MGI_C57BL6J_5590888	Gm31729	NCBI_Gene:102634050	MGI:5590888	lncRNA gene	predicted gene, 31729
2	pseudogene	10.893709	10.894520	positive	MGI_C57BL6J_5010732	Gm18547	NCBI_Gene:100417344,ENSEMBL:ENSMUSG00000103237	MGI:5010732	pseudogene	predicted gene, 18547
2	pseudogene	10.898671	10.899091	negative	MGI_C57BL6J_3652183	Gm13265	ENSEMBL:ENSMUSG00000081367	MGI:3652183	pseudogene	predicted gene 13265
2	pseudogene	10.958964	10.959964	negative	MGI_C57BL6J_3650829	Gm13263	NCBI_Gene:100040690,ENSEMBL:ENSMUSG00000082871	MGI:3650829	pseudogene	predicted gene 13263
2	gene	11.013808	11.013918	negative	MGI_C57BL6J_5610571	Gm37343	ENSEMBL:ENSMUSG00000102734	MGI:5610571	unclassified gene	predicted gene, 37343
2	gene	11.014762	11.014890	negative	MGI_C57BL6J_5453654	Gm23877	ENSEMBL:ENSMUSG00000089007	MGI:5453654	snoRNA gene	predicted gene, 23877
2	gene	11.036873	11.060129	positive	MGI_C57BL6J_3652184	Gm13264	NCBI_Gene:102634205,ENSEMBL:ENSMUSG00000085257	MGI:3652184	lncRNA gene	predicted gene 13264
2	gene	11.087781	11.087913	negative	MGI_C57BL6J_5456255	Gm26478	ENSEMBL:ENSMUSG00000084560	MGI:5456255	snRNA gene	predicted gene, 26478
2	pseudogene	11.090830	11.091763	positive	MGI_C57BL6J_3649442	Gm13297	NCBI_Gene:100040703,ENSEMBL:ENSMUSG00000081693	MGI:3649442	pseudogene	predicted gene 13297
2	pseudogene	11.098739	11.100264	negative	MGI_C57BL6J_3649472	Gm13294	NCBI_Gene:667192,ENSEMBL:ENSMUSG00000083900	MGI:3649472	pseudogene	predicted gene 13294
2	gene	11.171904	11.301226	positive	MGI_C57BL6J_97601	Prkcq	NCBI_Gene:18761,ENSEMBL:ENSMUSG00000026778	MGI:97601	protein coding gene	protein kinase C, theta
2	gene	11.181012	11.181940	positive	MGI_C57BL6J_5610160	Gm36932	ENSEMBL:ENSMUSG00000103774	MGI:5610160	unclassified gene	predicted gene, 36932
2	gene	11.190641	11.193312	negative	MGI_C57BL6J_5610748	Gm37520	ENSEMBL:ENSMUSG00000103253	MGI:5610748	unclassified gene	predicted gene, 37520
2	gene	11.227297	11.229863	positive	MGI_C57BL6J_5610994	Gm37766	ENSEMBL:ENSMUSG00000102992	MGI:5610994	unclassified gene	predicted gene, 37766
2	gene	11.315372	11.319874	negative	MGI_C57BL6J_5611399	Gm38171	ENSEMBL:ENSMUSG00000102196	MGI:5611399	lncRNA gene	predicted gene, 38171
2	gene	11.319591	11.334161	negative	MGI_C57BL6J_5591061	Gm31902	NCBI_Gene:102634279	MGI:5591061	lncRNA gene	predicted gene, 31902
2	gene	11.332825	11.333713	positive	MGI_C57BL6J_5611079	Gm37851	ENSEMBL:ENSMUSG00000102894	MGI:5611079	unclassified gene	predicted gene, 37851
2	gene	11.338366	11.398501	negative	MGI_C57BL6J_1924793	8030442B05Rik	NCBI_Gene:77543,ENSEMBL:ENSMUSG00000102674	MGI:1924793	lncRNA gene	RIKEN cDNA 8030442B05 gene
2	gene	11.339488	11.344111	positive	MGI_C57BL6J_3649469	Gm13293	NCBI_Gene:100503147,ENSEMBL:ENSMUSG00000086006	MGI:3649469	lncRNA gene	predicted gene 13293
2	gene	11.365241	11.367451	negative	MGI_C57BL6J_5610958	Gm37730	ENSEMBL:ENSMUSG00000103223	MGI:5610958	unclassified gene	predicted gene, 37730
2	gene	11.383445	11.393046	positive	MGI_C57BL6J_3649284	Gm13291	NCBI_Gene:108168739,ENSEMBL:ENSMUSG00000086491	MGI:3649284	lncRNA gene	predicted gene 13291
2	gene	11.383787	11.384907	negative	MGI_C57BL6J_1918282	4933403L11Rik	ENSEMBL:ENSMUSG00000103321	MGI:1918282	unclassified gene	RIKEN cDNA 4933403L11 gene
2	pseudogene	11.408849	11.410049	negative	MGI_C57BL6J_3649470	Gm13292	NCBI_Gene:100040898,ENSEMBL:ENSMUSG00000082424	MGI:3649470	pseudogene	predicted gene 13292
2	pseudogene	11.420205	11.421439	positive	MGI_C57BL6J_3649473	Gm13296	NCBI_Gene:667211,ENSEMBL:ENSMUSG00000082314	MGI:3649473	pseudogene	predicted gene 13296
2	gene	11.422527	11.447447	negative	MGI_C57BL6J_5591149	Gm31990	NCBI_Gene:102634398	MGI:5591149	lncRNA gene	predicted gene, 31990
2	gene	11.471430	11.554077	negative	MGI_C57BL6J_2181202	Pfkfb3	NCBI_Gene:170768,ENSEMBL:ENSMUSG00000026773	MGI:2181202	protein coding gene	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
2	gene	11.521524	11.530836	positive	MGI_C57BL6J_3641824	Gm10851	NCBI_Gene:100038528,ENSEMBL:ENSMUSG00000102329	MGI:3641824	lncRNA gene	predicted gene 10851
2	gene	11.532596	11.534694	negative	MGI_C57BL6J_5611203	Gm37975	ENSEMBL:ENSMUSG00000102376	MGI:5611203	unclassified gene	predicted gene, 37975
2	gene	11.585437	11.604153	negative	MGI_C57BL6J_1924188	Rbm17	NCBI_Gene:76938,ENSEMBL:ENSMUSG00000037197	MGI:1924188	protein coding gene	RNA binding motif protein 17
2	pseudogene	11.607417	11.608696	negative	MGI_C57BL6J_3650840	Gm13260	NCBI_Gene:100418223,ENSEMBL:ENSMUSG00000082727	MGI:3650840	pseudogene	predicted gene 13260
2	gene	11.625606	11.626264	negative	MGI_C57BL6J_4937124	Gm17490	ENSEMBL:ENSMUSG00000091312	MGI:4937124	protein coding gene	predicted gene, 17490
2	gene	11.642792	11.693194	positive	MGI_C57BL6J_96549	Il2ra	NCBI_Gene:16184,ENSEMBL:ENSMUSG00000026770	MGI:96549	protein coding gene	interleukin 2 receptor, alpha chain
2	gene	11.682688	11.694588	negative	MGI_C57BL6J_5622645	Gm39760	NCBI_Gene:105244083	MGI:5622645	lncRNA gene	predicted gene, 39760
2	gene	11.683126	11.683546	positive	MGI_C57BL6J_5611109	Gm37881	ENSEMBL:ENSMUSG00000104101	MGI:5611109	unclassified gene	predicted gene, 37881
2	gene	11.693584	11.699526	positive	MGI_C57BL6J_5622644	Gm39759	NCBI_Gene:105244082	MGI:5622644	lncRNA gene	predicted gene, 39759
2	gene	11.705169	11.734317	positive	MGI_C57BL6J_104644	Il15ra	NCBI_Gene:16169,ENSEMBL:ENSMUSG00000023206	MGI:104644	protein coding gene	interleukin 15 receptor, alpha chain
2	gene	11.742573	11.777588	negative	MGI_C57BL6J_1354699	Fbh1	NCBI_Gene:50755,ENSEMBL:ENSMUSG00000058594	MGI:1354699	protein coding gene	F-box DNA helicase 1
2	gene	11.743779	11.745188	negative	MGI_C57BL6J_5826368	Gm46731	NCBI_Gene:108168740	MGI:5826368	protein coding gene	predicted gene, 46731
2	gene	11.777753	11.790329	positive	MGI_C57BL6J_2444796	Ankrd16	NCBI_Gene:320816,ENSEMBL:ENSMUSG00000047909	MGI:2444796	protein coding gene	ankyrin repeat domain 16
2	pseudogene	11.900082	11.916902	positive	MGI_C57BL6J_5593927	Gm34768	NCBI_Gene:102638132,ENSEMBL:ENSMUSG00000103542	MGI:5593927	pseudogene	predicted gene, 34768
2	gene	11.925843	11.927868	positive	MGI_C57BL6J_5591363	Gm32204	NCBI_Gene:102634672	MGI:5591363	protein coding gene	predicted gene, 32204
2	pseudogene	12.082359	12.084148	negative	MGI_C57BL6J_3650665	Gm13310	NCBI_Gene:667247,ENSEMBL:ENSMUSG00000080801	MGI:3650665	pseudogene	predicted gene 13310
2	gene	12.106632	12.301922	negative	MGI_C57BL6J_109442	Itga8	NCBI_Gene:241226,ENSEMBL:ENSMUSG00000026768	MGI:109442	protein coding gene	integrin alpha 8
2	gene	12.128643	12.129742	negative	MGI_C57BL6J_5610929	Gm37701	ENSEMBL:ENSMUSG00000104174	MGI:5610929	unclassified gene	predicted gene, 37701
2	gene	12.300946	12.312315	positive	MGI_C57BL6J_2443735	E030013I19Rik	NCBI_Gene:338535,ENSEMBL:ENSMUSG00000086843	MGI:2443735	lncRNA gene	RIKEN cDNA E030013I19 gene
2	gene	12.347263	12.419490	negative	MGI_C57BL6J_1914210	Mindy3	NCBI_Gene:66960,ENSEMBL:ENSMUSG00000026767	MGI:1914210	protein coding gene	MINDY lysine 48 deubiquitinase 3
2	gene	12.357095	12.358496	negative	MGI_C57BL6J_5610517	Gm37289	ENSEMBL:ENSMUSG00000102630	MGI:5610517	unclassified gene	predicted gene, 37289
2	gene	12.372212	12.375271	negative	MGI_C57BL6J_5610483	Gm37255	ENSEMBL:ENSMUSG00000104449	MGI:5610483	unclassified gene	predicted gene, 37255
2	gene	12.389872	12.392483	negative	MGI_C57BL6J_5611242	Gm38014	ENSEMBL:ENSMUSG00000104406	MGI:5611242	unclassified gene	predicted gene, 38014
2	pseudogene	12.421595	12.422026	negative	MGI_C57BL6J_3649673	Gm13321	NCBI_Gene:100504380,ENSEMBL:ENSMUSG00000083547	MGI:3649673	pseudogene	predicted gene 13321
2	gene	12.697417	12.706853	positive	MGI_C57BL6J_5610793	Gm37565	ENSEMBL:ENSMUSG00000104045	MGI:5610793	lncRNA gene	predicted gene, 37565
2	gene	12.924034	13.003455	positive	MGI_C57BL6J_107372	Pter	NCBI_Gene:19212,ENSEMBL:ENSMUSG00000026730	MGI:107372	protein coding gene	phosphotriesterase related
2	gene	13.001887	13.011806	negative	MGI_C57BL6J_2387350	C1ql3	NCBI_Gene:227580,ENSEMBL:ENSMUSG00000049630	MGI:2387350	protein coding gene	C1q-like 3
2	gene	13.004365	13.007600	positive	MGI_C57BL6J_5611052	Gm37824	ENSEMBL:ENSMUSG00000104459	MGI:5611052	unclassified gene	predicted gene, 37824
2	gene	13.009886	13.012486	positive	MGI_C57BL6J_5611039	Gm37811	ENSEMBL:ENSMUSG00000102900	MGI:5611039	unclassified gene	predicted gene, 37811
2	gene	13.012624	13.014236	positive	MGI_C57BL6J_5610584	Gm37356	ENSEMBL:ENSMUSG00000103599	MGI:5610584	unclassified gene	predicted gene, 37356
2	gene	13.036126	13.040104	positive	MGI_C57BL6J_5610970	Gm37742	ENSEMBL:ENSMUSG00000103143	MGI:5610970	unclassified gene	predicted gene, 37742
2	gene	13.042601	13.045493	negative	MGI_C57BL6J_1924181	1700016C23Rik	NA	NA	unclassified gene	RIKEN cDNA 1700016C23 gene
2	gene	13.076821	13.271416	negative	MGI_C57BL6J_103040	Rsu1	NCBI_Gene:20163,ENSEMBL:ENSMUSG00000026727	MGI:103040	protein coding gene	Ras suppressor protein 1
2	gene	13.116176	13.118435	negative	MGI_C57BL6J_5611384	Gm38156	ENSEMBL:ENSMUSG00000103360	MGI:5611384	unclassified gene	predicted gene, 38156
2	gene	13.149539	13.149962	positive	MGI_C57BL6J_1924760	9330179A15Rik	NA	NA	unclassified gene	RIKEN cDNA 9330179A15 gene
2	gene	13.161751	13.163623	negative	MGI_C57BL6J_5611008	Gm37780	ENSEMBL:ENSMUSG00000102691	MGI:5611008	unclassified gene	predicted gene, 37780
2	gene	13.226828	13.227014	positive	MGI_C57BL6J_5530922	Gm27540	ENSEMBL:ENSMUSG00000099246	MGI:5530922	unclassified non-coding RNA gene	predicted gene, 27540
2	gene	13.238939	13.240627	negative	MGI_C57BL6J_5610388	Gm37160	ENSEMBL:ENSMUSG00000103232	MGI:5610388	unclassified gene	predicted gene, 37160
2	gene	13.271540	13.325827	positive	MGI_C57BL6J_3651704	Gm13270	NCBI_Gene:105244084,ENSEMBL:ENSMUSG00000086358	MGI:3651704	lncRNA gene	predicted gene 13270
2	gene	13.276338	13.491876	negative	MGI_C57BL6J_1931256	Cubn	NCBI_Gene:65969,ENSEMBL:ENSMUSG00000026726	MGI:1931256	protein coding gene	cubilin (intrinsic factor-cobalamin receptor)
2	gene	13.509014	13.544974	negative	MGI_C57BL6J_1274787	Trdmt1	NCBI_Gene:13434,ENSEMBL:ENSMUSG00000026723	MGI:1274787	protein coding gene	tRNA aspartic acid methyltransferase 1
2	gene	13.558323	13.571736	positive	MGI_C57BL6J_3642007	Gm9875	NCBI_Gene:105244085	MGI:3642007	lncRNA gene	predicted gene 9875
2	gene	13.573927	13.582826	positive	MGI_C57BL6J_98932	Vim	NCBI_Gene:22352,ENSEMBL:ENSMUSG00000026728	MGI:98932	protein coding gene	vimentin
2	gene	13.651018	13.794734	negative	MGI_C57BL6J_2386797	St8sia6	NCBI_Gene:241230,ENSEMBL:ENSMUSG00000003418	MGI:2386797	protein coding gene	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
2	gene	13.672516	13.674434	positive	MGI_C57BL6J_5610354	Gm37126	ENSEMBL:ENSMUSG00000104354	MGI:5610354	lncRNA gene	predicted gene, 37126
2	gene	13.850282	14.056135	negative	MGI_C57BL6J_1353592	Hacd1	NCBI_Gene:30963,ENSEMBL:ENSMUSG00000063275	MGI:1353592	protein coding gene	3-hydroxyacyl-CoA dehydratase 1
2	gene	14.016086	14.020049	negative	MGI_C57BL6J_2442341	D930036K23Rik	ENSEMBL:ENSMUSG00000102553	MGI:2442341	unclassified gene	RIKEN cDNA D930036K23 gene
2	gene	14.020978	14.021396	negative	MGI_C57BL6J_1917846	5730447C08Rik	NA	NA	unclassified gene	RIKEN cDNA 5730447C08 gene
2	gene	14.037825	14.040423	negative	MGI_C57BL6J_5611122	Gm37894	ENSEMBL:ENSMUSG00000103926	MGI:5611122	unclassified gene	predicted gene, 37894
2	gene	14.070332	14.073934	negative	MGI_C57BL6J_1918207	Stamos	NCBI_Gene:70957,ENSEMBL:ENSMUSG00000086657	MGI:1918207	lncRNA gene	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand
2	gene	14.073654	14.149634	positive	MGI_C57BL6J_1329014	Stam	NCBI_Gene:20844,ENSEMBL:ENSMUSG00000026718	MGI:1329014	protein coding gene	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
2	gene	14.149820	14.153297	positive	MGI_C57BL6J_5610727	Gm37499	ENSEMBL:ENSMUSG00000103901	MGI:5610727	unclassified gene	predicted gene, 37499
2	gene	14.174523	14.221993	positive	MGI_C57BL6J_1919309	Tmem236	NCBI_Gene:625286,ENSEMBL:ENSMUSG00000061531	MGI:1919309	protein coding gene	transmembrane protein 236
2	pseudogene	14.189623	14.189763	negative	MGI_C57BL6J_3649935	Gm13320	ENSEMBL:ENSMUSG00000083545	MGI:3649935	pseudogene	predicted gene 13320
2	gene	14.229392	14.332057	positive	MGI_C57BL6J_97142	Mrc1	NCBI_Gene:17533,ENSEMBL:ENSMUSG00000026712	MGI:97142	protein coding gene	mannose receptor, C type 1
2	gene	14.261003	14.261081	positive	MGI_C57BL6J_3718546	Mir511	miRBase:MI0005554,NCBI_Gene:100124488,ENSEMBL:ENSMUSG00000077897	MGI:3718546	miRNA gene	microRNA 511
2	gene	14.345677	14.347520	positive	MGI_C57BL6J_5610925	Gm37697	ENSEMBL:ENSMUSG00000103475	MGI:5610925	unclassified gene	predicted gene, 37697
2	gene	14.388316	14.494978	positive	MGI_C57BL6J_2139274	Slc39a12	NCBI_Gene:277468,ENSEMBL:ENSMUSG00000036949	MGI:2139274	protein coding gene	solute carrier family 39 (zinc transporter), member 12
2	gene	14.483090	14.483821	positive	MGI_C57BL6J_1924732	C030041M11Rik	NA	NA	unclassified gene	RIKEN cDNA C030041M11 gene
2	gene	14.512591	14.573345	positive	MGI_C57BL6J_3652181	Gm13266	NCBI_Gene:102634777,ENSEMBL:ENSMUSG00000084901	MGI:3652181	lncRNA gene	predicted gene 13266
2	gene	14.598741	14.603664	negative	MGI_C57BL6J_5591900	Gm32741	NCBI_Gene:102635384	MGI:5591900	lncRNA gene	predicted gene, 32741
2	gene	14.603088	14.988811	positive	MGI_C57BL6J_894644	Cacnb2	NCBI_Gene:12296,ENSEMBL:ENSMUSG00000057914	MGI:894644	protein coding gene	calcium channel, voltage-dependent, beta 2 subunit
2	pseudogene	14.603990	14.604611	negative	MGI_C57BL6J_3708655	Gm10849	ENSEMBL:ENSMUSG00000075525	MGI:3708655	pseudogene	predicted gene 10849
2	gene	14.611217	14.613837	positive	MGI_C57BL6J_5611333	Gm38105	ENSEMBL:ENSMUSG00000104153	MGI:5611333	unclassified gene	predicted gene, 38105
2	pseudogene	14.626822	14.631297	negative	MGI_C57BL6J_3651947	Gm13268	NCBI_Gene:100041164,ENSEMBL:ENSMUSG00000070271	MGI:3651947	pseudogene	predicted gene 13268
2	pseudogene	14.672255	14.672972	positive	MGI_C57BL6J_3651094	Gm13312	ENSEMBL:ENSMUSG00000083633	MGI:3651094	pseudogene	predicted gene 13312
2	gene	14.673404	14.674812	positive	MGI_C57BL6J_1920357	2900092N22Rik	ENSEMBL:ENSMUSG00000104034	MGI:1920357	unclassified gene	RIKEN cDNA 2900092N22 gene
2	pseudogene	14.691394	14.691728	negative	MGI_C57BL6J_3651092	Gm13314	ENSEMBL:ENSMUSG00000081008	MGI:3651092	pseudogene	predicted gene 13314
2	pseudogene	14.692097	14.693317	negative	MGI_C57BL6J_3651093	Gm13311	NCBI_Gene:102635164,ENSEMBL:ENSMUSG00000082542	MGI:3651093	pseudogene	predicted gene 13311
2	gene	14.703153	14.704717	positive	MGI_C57BL6J_1920255	2900072G11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900072G11 gene
2	gene	14.706834	14.739722	negative	MGI_C57BL6J_3641917	Gm10848	ENSEMBL:ENSMUSG00000104106	MGI:3641917	lncRNA gene	predicted gene 10848
2	gene	14.707665	14.710338	positive	MGI_C57BL6J_5610234	Gm37006	ENSEMBL:ENSMUSG00000103885	MGI:5610234	unclassified gene	predicted gene, 37006
2	pseudogene	14.720642	14.722622	positive	MGI_C57BL6J_3651096	Gm13315	NCBI_Gene:625342,ENSEMBL:ENSMUSG00000083305	MGI:3651096	pseudogene	predicted gene 13315
2	gene	14.735546	14.737927	negative	MGI_C57BL6J_5611501	Gm38273	ENSEMBL:ENSMUSG00000103050	MGI:5611501	unclassified gene	predicted gene, 38273
2	gene	14.740046	14.767024	negative	MGI_C57BL6J_3651949	Gm13269	NCBI_Gene:102634949,ENSEMBL:ENSMUSG00000087086	MGI:3651949	lncRNA gene	predicted gene 13269
2	pseudogene	14.811844	14.812538	negative	MGI_C57BL6J_3651097	Gm13316	NCBI_Gene:100418447,ENSEMBL:ENSMUSG00000085281	MGI:3651097	pseudogene	predicted gene 13316
2	gene	14.886696	14.888135	positive	MGI_C57BL6J_1924580	C030011G24Rik	NA	NA	unclassified gene	RIKEN cDNA C030011G24 gene
2	gene	14.944908	14.946844	positive	MGI_C57BL6J_5610665	Gm37437	ENSEMBL:ENSMUSG00000102673	MGI:5610665	unclassified gene	predicted gene, 37437
2	gene	14.966198	14.967523	positive	MGI_C57BL6J_5611119	Gm37891	ENSEMBL:ENSMUSG00000104271	MGI:5611119	unclassified gene	predicted gene, 37891
2	gene	14.991522	15.055069	negative	MGI_C57BL6J_1921705	Nsun6	NCBI_Gene:74455,ENSEMBL:ENSMUSG00000026707	MGI:1921705	protein coding gene	NOL1/NOP2/Sun domain family member 6
2	gene	15.031801	15.034176	negative	MGI_C57BL6J_5610158	Gm36930	ENSEMBL:ENSMUSG00000103778	MGI:5610158	unclassified gene	predicted gene, 36930
2	gene	15.049395	15.082456	positive	MGI_C57BL6J_1923119	Arl5b	NCBI_Gene:75869,ENSEMBL:ENSMUSG00000017418	MGI:1923119	protein coding gene	ADP-ribosylation factor-like 5B
2	gene	15.056713	15.059473	positive	MGI_C57BL6J_5611485	Gm38257	ENSEMBL:ENSMUSG00000102258	MGI:5611485	unclassified gene	predicted gene, 38257
2	pseudogene	15.127600	15.128683	positive	MGI_C57BL6J_3651091	Gm13313	NCBI_Gene:633061,ENSEMBL:ENSMUSG00000083860	MGI:3651091	pseudogene	predicted gene 13313
2	pseudogene	15.342625	15.343420	positive	MGI_C57BL6J_3651223	Gm13367	NCBI_Gene:100416184,ENSEMBL:ENSMUSG00000080930	MGI:3651223	pseudogene	predicted gene 13367
2	pseudogene	15.385618	15.386587	positive	MGI_C57BL6J_3651974	Gm13366	NCBI_Gene:100416759,ENSEMBL:ENSMUSG00000083631	MGI:3651974	pseudogene	predicted gene 13366
2	pseudogene	15.396661	15.398198	positive	MGI_C57BL6J_3651225	Gm13365	NCBI_Gene:667329,ENSEMBL:ENSMUSG00000082632	MGI:3651225	pseudogene	predicted gene 13365
2	pseudogene	15.481876	15.482369	positive	MGI_C57BL6J_3651966	Gm13368	NCBI_Gene:227588,ENSEMBL:ENSMUSG00000081389	MGI:3651966	pseudogene	predicted gene 13368
2	gene	15.526479	16.255557	positive	MGI_C57BL6J_1928271	Malrd1	NCBI_Gene:102635496,ENSEMBL:ENSMUSG00000075520	MGI:1928271	protein coding gene	MAM and LDL receptor class A domain containing 1
2	gene	15.531113	15.532854	positive	MGI_C57BL6J_5610823	Gm37595	ENSEMBL:ENSMUSG00000103356	MGI:5610823	unclassified gene	predicted gene, 37595
2	pseudogene	15.956925	15.957537	positive	MGI_C57BL6J_3645486	Gm6587	NCBI_Gene:625457,ENSEMBL:ENSMUSG00000081245	MGI:3645486	pseudogene	predicted gene 6587
2	gene	16.021779	16.024507	negative	MGI_C57BL6J_5610644	Gm37416	NCBI_Gene:105244086,ENSEMBL:ENSMUSG00000103865	MGI:5610644	protein coding gene	predicted gene, 37416
2	pseudogene	16.268362	16.270791	negative	MGI_C57BL6J_3651285	Gm13319	NCBI_Gene:100852391	MGI:3651285	pseudogene	predicted gene 13319
2	gene	16.356210	16.761132	positive	MGI_C57BL6J_1914698	Plxdc2	NCBI_Gene:67448,ENSEMBL:ENSMUSG00000026748	MGI:1914698	protein coding gene	plexin domain containing 2
2	gene	16.457654	16.461843	positive	MGI_C57BL6J_5012223	Gm20038	NA	NA	unclassified gene	predicted gene%2c 20038
2	gene	16.692248	16.695626	positive	MGI_C57BL6J_2444687	9930032E11Rik	NA	NA	unclassified gene	RIKEN cDNA 9930032E11 gene
2	gene	16.918678	17.013726	negative	MGI_C57BL6J_1922319	4930515L03Rik	NCBI_Gene:75069	MGI:1922319	lncRNA gene	RIKEN cDNA 4930515L03 gene
2	gene	16.959909	16.960018	negative	MGI_C57BL6J_5454710	Gm24933	ENSEMBL:ENSMUSG00000076950	MGI:5454710	miRNA gene	predicted gene, 24933
2	pseudogene	16.978620	16.979849	negative	MGI_C57BL6J_3650196	Gm13326	NCBI_Gene:383665,ENSEMBL:ENSMUSG00000082235	MGI:3650196	pseudogene	predicted gene 13326
2	gene	17.017682	17.018646	negative	MGI_C57BL6J_1920285	2900073N21Rik	NA	NA	unclassified gene	RIKEN cDNA 2900073N21 gene
2	gene	17.061614	17.166869	negative	MGI_C57BL6J_5592161	Gm33002	NCBI_Gene:102635741	MGI:5592161	lncRNA gene	predicted gene, 33002
2	pseudogene	17.169158	17.173033	positive	MGI_C57BL6J_3650421	Gm13325	NCBI_Gene:100503105,ENSEMBL:ENSMUSG00000081525	MGI:3650421	pseudogene	predicted gene 13325
2	gene	17.181743	17.185487	negative	MGI_C57BL6J_3650424	Gm13322	ENSEMBL:ENSMUSG00000085193	MGI:3650424	lncRNA gene	predicted gene 13322
2	gene	17.343030	17.731464	negative	MGI_C57BL6J_1921353	Nebl	NCBI_Gene:74103,ENSEMBL:ENSMUSG00000053702	MGI:1921353	protein coding gene	nebulette
2	gene	17.365432	17.367973	positive	MGI_C57BL6J_2442913	A430023P06Rik	NA	NA	unclassified gene	RIKEN cDNA A430023P06 gene
2	gene	17.559060	17.559998	positive	MGI_C57BL6J_3650422	Gm13324	ENSEMBL:ENSMUSG00000085100	MGI:3650422	lncRNA gene	predicted gene 13324
2	gene	17.563514	17.563626	positive	MGI_C57BL6J_5531095	Mir6419	miRBase:MI0021957,NCBI_Gene:102465964,ENSEMBL:ENSMUSG00000099161	MGI:5531095	miRNA gene	microRNA 6419
2	pseudogene	17.796834	17.797984	negative	MGI_C57BL6J_3650423	Gm13323	NCBI_Gene:100417047,ENSEMBL:ENSMUSG00000081851	MGI:3650423	pseudogene	predicted gene 13323
2	gene	17.996417	17.996958	negative	MGI_C57BL6J_1915481	H2al2a	NCBI_Gene:68231,ENSEMBL:ENSMUSG00000062651	MGI:1915481	protein coding gene	H2A histone family member L2A
2	pseudogene	17.998241	17.998505	negative	MGI_C57BL6J_3650095	Gm13329	ENSEMBL:ENSMUSG00000081116	MGI:3650095	pseudogene	predicted gene 13329
2	gene	18.019767	18.035222	negative	MGI_C57BL6J_5592244	Gm33085	NCBI_Gene:102635846	MGI:5592244	lncRNA gene	predicted gene, 33085
2	gene	18.025187	18.037741	negative	MGI_C57BL6J_1925190	A930004D18Rik	NCBI_Gene:77940,ENSEMBL:ENSMUSG00000054057	MGI:1925190	protein coding gene	RIKEN cDNA A930004D18 gene
2	gene	18.027249	18.030577	positive	MGI_C57BL6J_5009925	Gm17762	NCBI_Gene:100034739	MGI:5009925	lncRNA gene	predicted gene, 17762
2	gene	18.032533	18.039633	positive	MGI_C57BL6J_3649452	Gm13330	ENSEMBL:ENSMUSG00000085319	MGI:3649452	lncRNA gene	predicted gene 13330
2	gene	18.036669	18.049051	negative	MGI_C57BL6J_1919918	Skida1	NCBI_Gene:72668,ENSEMBL:ENSMUSG00000054074	MGI:1919918	protein coding gene	SKI/DACH domain containing 1
2	gene	18.054193	18.056613	negative	MGI_C57BL6J_1917068	1810059C17Rik	ENSEMBL:ENSMUSG00000086340	MGI:1917068	lncRNA gene	RIKEN cDNA 1810059C17 gene
2	gene	18.055175	18.212390	positive	MGI_C57BL6J_1329038	Mllt10	NCBI_Gene:17354,ENSEMBL:ENSMUSG00000026743	MGI:1329038	protein coding gene	myeloid/lymphoid or mixed-lineage leukemia, translocated to, 10
2	gene	18.057572	18.064241	negative	MGI_C57BL6J_5622647	Gm39762	NCBI_Gene:105244088	MGI:5622647	lncRNA gene	predicted gene, 39762
2	gene	18.057846	18.057903	positive	MGI_C57BL6J_5531176	Mir7655	miRBase:MI0024995,NCBI_Gene:102466840,ENSEMBL:ENSMUSG00000099050	MGI:5531176	miRNA gene	microRNA 7655
2	gene	18.129452	18.129577	negative	MGI_C57BL6J_5453415	Gm23638	ENSEMBL:ENSMUSG00000092814	MGI:5453415	miRNA gene	predicted gene, 23638
2	gene	18.158687	18.158791	positive	MGI_C57BL6J_5454924	Gm25147	ENSEMBL:ENSMUSG00000064964	MGI:5454924	snRNA gene	predicted gene, 25147
2	pseudogene	18.178762	18.179442	negative	MGI_C57BL6J_3651067	Gm13351	NCBI_Gene:108168725,ENSEMBL:ENSMUSG00000081619	MGI:3651067	pseudogene	predicted gene 13351
2	gene	18.188864	18.196587	negative	MGI_C57BL6J_5622646	Gm39761	NCBI_Gene:105244087	MGI:5622646	lncRNA gene	predicted gene, 39761
2	gene	18.195654	18.392853	negative	MGI_C57BL6J_103268	Dnajc1	NCBI_Gene:13418,ENSEMBL:ENSMUSG00000026740	MGI:103268	protein coding gene	DnaJ heat shock protein family (Hsp40) member C1
2	pseudogene	18.249245	18.249845	negative	MGI_C57BL6J_3651066	Gm13350	NCBI_Gene:100462895,ENSEMBL:ENSMUSG00000083070	MGI:3651066	pseudogene	predicted gene 13350
2	pseudogene	18.338579	18.338989	negative	MGI_C57BL6J_3649966	Gm13349	ENSEMBL:ENSMUSG00000082520	MGI:3649966	pseudogene	predicted gene 13349
2	gene	18.424569	18.427607	negative	MGI_C57BL6J_5012278	Gm20093	NA	NA	unclassified gene	predicted gene%2c 20093
2	pseudogene	18.568126	18.568198	positive	MGI_C57BL6J_3650944	Gm13353	ENSEMBL:ENSMUSG00000081181	MGI:3650944	pseudogene	predicted gene 13353
2	gene	18.587044	18.587117	negative	MGI_C57BL6J_4413746	n-TNgtt9	NCBI_Gene:102467477	MGI:4413746	tRNA gene	nuclear encoded tRNA asparagine 9 (anticodon GTT)
2	pseudogene	18.638170	18.642326	negative	MGI_C57BL6J_3650085	Gm13355	NCBI_Gene:100328601,ENSEMBL:ENSMUSG00000082943	MGI:3650085	pseudogene	predicted gene 13355
2	pseudogene	18.645735	18.649346	negative	MGI_C57BL6J_3651070	Gm13352	NCBI_Gene:102636124,ENSEMBL:ENSMUSG00000086882	MGI:3651070	pseudogene	predicted gene 13352
2	gene	18.668574	18.672401	negative	MGI_C57BL6J_5592514	Gm33355	NCBI_Gene:102636227	MGI:5592514	lncRNA gene	predicted gene, 33355
2	gene	18.672384	18.676231	positive	MGI_C57BL6J_88218	Commd3	NCBI_Gene:12238,ENSEMBL:ENSMUSG00000051154	MGI:88218	protein coding gene	COMM domain containing 3
2	gene	18.677018	18.686629	positive	MGI_C57BL6J_88174	Bmi1	NCBI_Gene:12151,ENSEMBL:ENSMUSG00000026739	MGI:88174	protein coding gene	Bmi1 polycomb ring finger oncogene
2	gene	18.687502	18.690731	negative	MGI_C57BL6J_5826362	Gm46725	NCBI_Gene:108168727	MGI:5826362	protein coding gene	predicted gene, 46725
2	gene	18.694011	18.750413	positive	MGI_C57BL6J_3040687	Spag6	NCBI_Gene:381350,ENSEMBL:ENSMUSG00000037708	MGI:3040687	protein coding gene	sperm associated antigen 6
2	gene	18.694052	18.699037	positive	MGI_C57BL6J_3757726	Gm13334	NA	NA	protein coding gene	predicted gene 13334
2	gene	18.742709	18.760862	negative	MGI_C57BL6J_3781541	Gm3363	NCBI_Gene:100041479	MGI:3781541	lncRNA gene	predicted gene 3363
2	gene	18.742715	18.760862	negative	MGI_C57BL6J_5142004	Gm20539	ENSEMBL:ENSMUSG00000092353	MGI:5142004	lncRNA gene	predicted gene 20539
2	pseudogene	18.758984	18.759764	positive	MGI_C57BL6J_3649264	Gm13333	NCBI_Gene:667493,ENSEMBL:ENSMUSG00000081139	MGI:3649264	pseudogene	predicted gene 13333
2	gene	18.799245	18.801818	negative	MGI_C57BL6J_1914024	Carlr	NCBI_Gene:66774,ENSEMBL:ENSMUSG00000097638	MGI:1914024	lncRNA gene	cardiac and apoptosis-related long non-coding RNA
2	gene	18.842255	18.998400	negative	MGI_C57BL6J_1298206	Pip4k2a	NCBI_Gene:18718,ENSEMBL:ENSMUSG00000026737	MGI:1298206	protein coding gene	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
2	gene	18.873384	18.875174	negative	MGI_C57BL6J_5592693	Gm33534	NCBI_Gene:102636479	MGI:5592693	lncRNA gene	predicted gene, 33534
2	gene	18.916652	18.918882	negative	MGI_C57BL6J_5012284	Gm20099	NA	NA	unclassified gene	predicted gene%2c 20099
2	gene	18.965492	18.968245	negative	MGI_C57BL6J_2444571	A130001G05Rik	NA	NA	unclassified gene	RIKEN cDNA A130001G05 gene
2	gene	18.998319	18.999804	positive	MGI_C57BL6J_1921879	4930426L09Rik	NCBI_Gene:74629,ENSEMBL:ENSMUSG00000026736	MGI:1921879	lncRNA gene	RIKEN cDNA 4930426L09 gene
2	gene	19.006817	19.016919	positive	MGI_C57BL6J_5592751	Gm33592	NCBI_Gene:102636559	MGI:5592751	lncRNA gene	predicted gene, 33592
2	pseudogene	19.101701	19.103098	negative	MGI_C57BL6J_3649261	Gm13332	NCBI_Gene:667521,ENSEMBL:ENSMUSG00000083281	MGI:3649261	pseudogene	predicted gene 13332
2	gene	19.198865	19.310243	positive	MGI_C57BL6J_1918132	Armc3	NCBI_Gene:70882,ENSEMBL:ENSMUSG00000037683	MGI:1918132	protein coding gene	armadillo repeat containing 3
2	gene	19.344317	19.352251	positive	MGI_C57BL6J_1918902	4930447M23Rik	NCBI_Gene:108871,ENSEMBL:ENSMUSG00000087674	MGI:1918902	lncRNA gene	RIKEN cDNA 4930447M23 gene
2	gene	19.371411	19.394976	positive	MGI_C57BL6J_1923717	Msrb2	NCBI_Gene:76467,ENSEMBL:ENSMUSG00000023094	MGI:1923717	protein coding gene	methionine sulfoxide reductase B2
2	gene	19.415605	19.431180	positive	MGI_C57BL6J_5593099	Gm33940	NCBI_Gene:102637028,ENSEMBL:ENSMUSG00000109733	MGI:5593099	lncRNA gene	predicted gene, 33940
2	gene	19.429104	19.431983	negative	MGI_C57BL6J_3649239	Gm13344	ENSEMBL:ENSMUSG00000087103	MGI:3649239	lncRNA gene	predicted gene 13344
2	gene	19.441508	19.446674	negative	MGI_C57BL6J_3651438	Ptf1aos	NCBI_Gene:102637107,ENSEMBL:ENSMUSG00000085388	MGI:3651438	antisense lncRNA gene	pancreas specific transcription factor 1a, opposite strand
2	gene	19.445663	19.447501	positive	MGI_C57BL6J_1328312	Ptf1a	NCBI_Gene:19213,ENSEMBL:ENSMUSG00000026735	MGI:1328312	protein coding gene	pancreas specific transcription factor, 1a
2	gene	19.451828	19.454995	positive	MGI_C57BL6J_1921419	1810010K12Rik	ENSEMBL:ENSMUSG00000056329	MGI:1921419	lncRNA gene	RIKEN cDNA 1810010K12 gene
2	gene	19.462837	19.553914	negative	MGI_C57BL6J_1918087	4921504E06Rik	NCBI_Gene:70909,ENSEMBL:ENSMUSG00000026734	MGI:1918087	protein coding gene	RIKEN cDNA 4921504E06 gene
2	pseudogene	19.509090	19.509317	negative	MGI_C57BL6J_3649240	Gm13345	ENSEMBL:ENSMUSG00000084160	MGI:3649240	pseudogene	predicted gene 13345
2	gene	19.570098	19.577472	positive	MGI_C57BL6J_5622649	Gm39764	NCBI_Gene:105244090	MGI:5622649	lncRNA gene	predicted gene, 39764
2	gene	19.634034	19.637019	negative	MGI_C57BL6J_3649255	Gm13348	NCBI_Gene:102637193,ENSEMBL:ENSMUSG00000086621	MGI:3649255	lncRNA gene	predicted gene 13348
2	pseudogene	19.652244	19.652348	negative	MGI_C57BL6J_3649694	Gm13343	ENSEMBL:ENSMUSG00000080227	MGI:3649694	pseudogene	predicted gene 13343
2	gene	19.655806	19.657897	negative	MGI_C57BL6J_3781408	Gm3230	NCBI_Gene:100041244	MGI:3781408	lncRNA gene	predicted gene 3230
2	gene	19.657752	19.660590	positive	MGI_C57BL6J_1918448	Otud1	NCBI_Gene:71198,ENSEMBL:ENSMUSG00000043415	MGI:1918448	protein coding gene	OTU domain containing 1
2	gene	19.676711	19.686157	negative	MGI_C57BL6J_3649698	Gm13346	ENSEMBL:ENSMUSG00000087246	MGI:3649698	lncRNA gene	predicted gene 13346
2	pseudogene	19.677251	19.678603	positive	MGI_C57BL6J_3649701	Gm13347	NCBI_Gene:667564,ENSEMBL:ENSMUSG00000083893	MGI:3649701	pseudogene	predicted gene 13347
2	gene	19.691288	19.691419	positive	MGI_C57BL6J_5454447	Gm24670	ENSEMBL:ENSMUSG00000077342	MGI:5454447	snoRNA gene	predicted gene, 24670
2	gene	19.888653	19.888728	positive	MGI_C57BL6J_5690849	Gm44457	ENSEMBL:ENSMUSG00000105927	MGI:5690849	miRNA gene	predicted gene, 44457
2	gene	19.909763	20.810713	positive	MGI_C57BL6J_95454	Etl4	NCBI_Gene:208618,ENSEMBL:ENSMUSG00000036617	MGI:95454	protein coding gene	enhancer trap locus 4
2	gene	19.934863	19.934953	positive	MGI_C57BL6J_5455636	Gm25859	ENSEMBL:ENSMUSG00000065644	MGI:5455636	snoRNA gene	predicted gene, 25859
2	pseudogene	19.964650	19.967434	negative	MGI_C57BL6J_3651169	Gm13361	NCBI_Gene:100041302,ENSEMBL:ENSMUSG00000083777	MGI:3651169	pseudogene	predicted gene 13361
2	pseudogene	19.992266	19.995055	positive	MGI_C57BL6J_3651407	Gm13363	NCBI_Gene:433406,ENSEMBL:ENSMUSG00000060795	MGI:3651407	pseudogene	predicted gene 13363
2	gene	20.007040	20.011380	positive	MGI_C57BL6J_3641737	Gm16495	NA	NA	unclassified gene	predicted gene 16495
2	pseudogene	20.035393	20.037966	negative	MGI_C57BL6J_3652147	Gm13360	NCBI_Gene:654360,ENSEMBL:ENSMUSG00000082164	MGI:3652147	pseudogene	predicted gene 13360
2	pseudogene	20.234905	20.236064	negative	MGI_C57BL6J_3651185	Gm13328	NCBI_Gene:667609,ENSEMBL:ENSMUSG00000081128	MGI:3651185	pseudogene	predicted gene 13328
2	gene	20.280519	20.280625	positive	MGI_C57BL6J_5453747	Gm23970	ENSEMBL:ENSMUSG00000065253	MGI:5453747	snRNA gene	predicted gene, 23970
2	gene	20.298474	20.333259	negative	MGI_C57BL6J_4937998	Gm17171	NCBI_Gene:102637381,ENSEMBL:ENSMUSG00000091457	MGI:4937998	lncRNA gene	predicted gene 17171
2	gene	20.420570	20.432934	negative	MGI_C57BL6J_3651482	Gm13335	ENSEMBL:ENSMUSG00000085477	MGI:3651482	lncRNA gene	predicted gene 13335
2	gene	20.536997	20.539301	positive	MGI_C57BL6J_3026949	8030447M02Rik	NA	NA	unclassified gene	RIKEN cDNA 8030447M02 gene
2	gene	20.559804	20.559892	positive	MGI_C57BL6J_5530828	Gm27446	ENSEMBL:ENSMUSG00000098575	MGI:5530828	unclassified non-coding RNA gene	predicted gene, 27446
2	gene	20.709375	20.713234	negative	MGI_C57BL6J_3652150	Gm13362	ENSEMBL:ENSMUSG00000086418	MGI:3652150	lncRNA gene	predicted gene 13362
2	gene	20.847919	20.968881	negative	MGI_C57BL6J_1918685	Arhgap21	NCBI_Gene:71435,ENSEMBL:ENSMUSG00000036591	MGI:1918685	protein coding gene	Rho GTPase activating protein 21
2	gene	20.921860	20.931389	negative	MGI_C57BL6J_3649647	Gm13380	ENSEMBL:ENSMUSG00000085206	MGI:3649647	lncRNA gene	predicted gene 13380
2	gene	20.968874	20.970348	positive	MGI_C57BL6J_3649913	Gm13375	NCBI_Gene:433408,ENSEMBL:ENSMUSG00000075514	MGI:3649913	lncRNA gene	predicted gene 13375
2	pseudogene	21.044808	21.141954	negative	MGI_C57BL6J_3649914	Gm13377	NCBI_Gene:675912,ENSEMBL:ENSMUSG00000086821	MGI:3649914	pseudogene	predicted gene 13377
2	gene	21.097099	21.120659	positive	MGI_C57BL6J_3649912	Gm13376	ENSEMBL:ENSMUSG00000087219	MGI:3649912	lncRNA gene	predicted gene 13376
2	gene	21.140920	21.144206	positive	MGI_C57BL6J_3045281	C130046B21Rik	NA	NA	unclassified gene	RIKEN cDNA C130046B21 gene
2	gene	21.171083	21.171213	positive	MGI_C57BL6J_5455145	Gm25368	ENSEMBL:ENSMUSG00000089472	MGI:5455145	rRNA gene	predicted gene, 25368
2	gene	21.180731	21.205365	negative	MGI_C57BL6J_1918483	Enkur	NCBI_Gene:71233,ENSEMBL:ENSMUSG00000026679	MGI:1918483	protein coding gene	enkurin, TRPC channel interacting protein
2	gene	21.197690	21.197866	negative	MGI_C57BL6J_5452784	Gm23007	ENSEMBL:ENSMUSG00000089576	MGI:5452784	unclassified non-coding RNA gene	predicted gene, 23007
2	gene	21.205357	21.215009	positive	MGI_C57BL6J_2139347	Thnsl1	NCBI_Gene:208967,ENSEMBL:ENSMUSG00000048550	MGI:2139347	protein coding gene	threonine synthase-like 1 (bacterial)
2	pseudogene	21.244102	21.247680	positive	MGI_C57BL6J_3650302	Gm13378	NCBI_Gene:100416185,ENSEMBL:ENSMUSG00000084071	MGI:3650302	pseudogene	predicted gene 13378
2	gene	21.341925	21.369111	negative	MGI_C57BL6J_3651762	Gm13327	ENSEMBL:ENSMUSG00000085680	MGI:3651762	lncRNA gene	predicted gene 13327
2	gene	21.367542	21.830547	positive	MGI_C57BL6J_2441697	Gpr158	NCBI_Gene:241263,ENSEMBL:ENSMUSG00000045967	MGI:2441697	protein coding gene	G protein-coupled receptor 158
2	pseudogene	21.442709	21.443618	negative	MGI_C57BL6J_3649905	Gm13379	NCBI_Gene:100416869,ENSEMBL:ENSMUSG00000080846	MGI:3649905	pseudogene	predicted gene 13379
2	gene	21.794933	21.795055	negative	MGI_C57BL6J_5454663	Gm24886	ENSEMBL:ENSMUSG00000077572	MGI:5454663	snoRNA gene	predicted gene, 24886
2	gene	21.795101	21.817155	negative	MGI_C57BL6J_5622651	Gm39766	NCBI_Gene:105244092	MGI:5622651	lncRNA gene	predicted gene, 39766
2	gene	21.878833	21.964167	negative	MGI_C57BL6J_5622652	Gm39767	NCBI_Gene:105244093	MGI:5622652	lncRNA gene	predicted gene, 39767
2	gene	21.880330	21.882870	positive	MGI_C57BL6J_3642097	Gm10846	NA	NA	unclassified gene	predicted gene 10846
2	pseudogene	22.067756	22.069522	positive	MGI_C57BL6J_3650269	Gm13337	NCBI_Gene:637235,ENSEMBL:ENSMUSG00000081467	MGI:3650269	pseudogene	predicted gene 13337
2	gene	22.227503	22.618252	positive	MGI_C57BL6J_2183924	Myo3a	NCBI_Gene:667663,ENSEMBL:ENSMUSG00000025716	MGI:2183924	protein coding gene	myosin IIIA
2	pseudogene	22.410432	22.410752	negative	MGI_C57BL6J_3650441	Gm13342	NCBI_Gene:102637566,ENSEMBL:ENSMUSG00000082516	MGI:3650441	pseudogene	predicted gene 13342
2	pseudogene	22.587291	22.587962	negative	MGI_C57BL6J_3650228	Gm13341	ENSEMBL:ENSMUSG00000083863	MGI:3650228	pseudogene	predicted gene 13341
2	pseudogene	22.588103	22.589647	negative	MGI_C57BL6J_3650227	Gm13340	ENSEMBL:ENSMUSG00000083563	MGI:3650227	pseudogene	predicted gene 13340
2	pseudogene	22.590024	22.590533	negative	MGI_C57BL6J_3650221	Gm13339	ENSEMBL:ENSMUSG00000082884	MGI:3650221	pseudogene	predicted gene 13339
2	gene	22.621422	22.693877	positive	MGI_C57BL6J_95634	Gad2	NCBI_Gene:14417,ENSEMBL:ENSMUSG00000026787	MGI:95634	protein coding gene	glutamic acid decarboxylase 2
2	gene	22.654283	22.654350	positive	MGI_C57BL6J_4950406	Mir3967	miRBase:MI0016976,NCBI_Gene:100628608,ENSEMBL:ENSMUSG00000106199	MGI:4950406	miRNA gene	microRNA 3967
2	gene	22.666658	22.666752	positive	MGI_C57BL6J_5453413	Gm23636	ENSEMBL:ENSMUSG00000092811	MGI:5453413	miRNA gene	predicted gene, 23636
2	pseudogene	22.712398	22.713871	positive	MGI_C57BL6J_3651856	Gm13338	NCBI_Gene:100046638,ENSEMBL:ENSMUSG00000083453	MGI:3651856	pseudogene	predicted gene 13338
2	gene	22.755984	22.762273	positive	MGI_C57BL6J_1921545	1700092C17Rik	ENSEMBL:ENSMUSG00000085353	MGI:1921545	lncRNA gene	RIKEN cDNA 1700092C17 gene
2	gene	22.755989	22.875653	positive	MGI_C57BL6J_1861354	Apbb1ip	NCBI_Gene:54519,ENSEMBL:ENSMUSG00000026786	MGI:1861354	protein coding gene	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
2	pseudogene	22.762744	22.763078	negative	MGI_C57BL6J_3651267	Gm13356	ENSEMBL:ENSMUSG00000083057	MGI:3651267	pseudogene	predicted gene 13356
2	pseudogene	22.895321	22.895736	negative	MGI_C57BL6J_2441774	A130006I12Rik	ENSEMBL:ENSMUSG00000069136	MGI:2441774	pseudogene	RIKEN cDNA A130006I12 gene
2	gene	22.895504	22.940266	positive	MGI_C57BL6J_1889278	Pdss1	NCBI_Gene:56075,ENSEMBL:ENSMUSG00000026784	MGI:1889278	protein coding gene	prenyl (solanesyl) diphosphate synthase, subunit 1
2	gene	22.902388	22.902507	positive	MGI_C57BL6J_5455321	Gm25544	ENSEMBL:ENSMUSG00000084625	MGI:5455321	snoRNA gene	predicted gene, 25544
2	pseudogene	22.913260	22.913883	negative	MGI_C57BL6J_3652321	Gm14441	NCBI_Gene:100416283,ENSEMBL:ENSMUSG00000081861	MGI:3652321	pseudogene	predicted gene 14441
2	gene	22.925608	22.926329	negative	MGI_C57BL6J_1923932	1500002K03Rik	NA	NA	unclassified gene	RIKEN cDNA 1500002K03 gene
2	gene	22.939989	23.040241	negative	MGI_C57BL6J_104913	Abi1	NCBI_Gene:11308,ENSEMBL:ENSMUSG00000058835	MGI:104913	protein coding gene	abl-interactor 1
2	gene	22.991494	22.993452	negative	MGI_C57BL6J_1919530	2210402A03Rik	NA	NA	unclassified gene	RIKEN cDNA 2210402A03 gene
2	pseudogene	23.019131	23.019667	negative	MGI_C57BL6J_3651263	Gm13357	ENSEMBL:ENSMUSG00000083650	MGI:3651263	pseudogene	predicted gene 13357
2	gene	23.067689	23.115558	positive	MGI_C57BL6J_1921409	Acbd5	NCBI_Gene:74159,ENSEMBL:ENSMUSG00000026781	MGI:1921409	protein coding gene	acyl-Coenzyme A binding domain containing 5
2	gene	23.115606	23.156024	negative	MGI_C57BL6J_1914371	Mastl	NCBI_Gene:67121,ENSEMBL:ENSMUSG00000026779	MGI:1914371	protein coding gene	microtubule associated serine/threonine kinase-like
2	gene	23.155442	23.199260	positive	MGI_C57BL6J_1351651	Yme1l1	NCBI_Gene:27377,ENSEMBL:ENSMUSG00000026775	MGI:1351651	protein coding gene	YME1-like 1 (S. cerevisiae)
2	pseudogene	23.202033	23.203683	positive	MGI_C57BL6J_3650165	Gm13423	NCBI_Gene:100416062,ENSEMBL:ENSMUSG00000081648	MGI:3650165	pseudogene	predicted gene 13423
2	gene	23.203425	23.267172	positive	MGI_C57BL6J_1918231	Fem1al	NCBI_Gene:70981,ENSEMBL:ENSMUSG00000026774	MGI:1918231	protein coding gene	fem-1 homolog A like
2	pseudogene	23.235120	23.235932	positive	MGI_C57BL6J_3650167	Gm13422	NCBI_Gene:664835,ENSEMBL:ENSMUSG00000084098	MGI:3650167	pseudogene	predicted gene 13422
2	gene	23.320924	23.401986	positive	MGI_C57BL6J_107491	Nxph2	NCBI_Gene:18232,ENSEMBL:ENSMUSG00000069132	MGI:107491	protein coding gene	neurexophilin 2
2	gene	23.353095	23.367102	negative	MGI_C57BL6J_5593928	Gm34769	NCBI_Gene:102638133	MGI:5593928	lncRNA gene	predicted gene, 34769
2	gene	23.492928	23.494448	negative	MGI_C57BL6J_3028029	A330106F07Rik	NA	NA	unclassified gene	RIKEN cDNA A330106F07 gene
2	gene	23.492931	23.494448	positive	MGI_C57BL6J_5611537	Gm38309	ENSEMBL:ENSMUSG00000102704	MGI:5611537	unclassified gene	predicted gene, 38309
2	gene	23.506220	23.572129	negative	MGI_C57BL6J_1924107	Spopl	NCBI_Gene:76857,ENSEMBL:ENSMUSG00000026771	MGI:1924107	protein coding gene	speckle-type BTB/POZ protein-like
2	pseudogene	23.508662	23.510095	positive	MGI_C57BL6J_3649454	Gm13331	NCBI_Gene:664822,ENSEMBL:ENSMUSG00000081519	MGI:3649454	pseudogene	predicted gene 13331
2	pseudogene	23.680182	23.681590	positive	MGI_C57BL6J_1313300	Sh3d2c-ps1	NCBI_Gene:20406,ENSEMBL:ENSMUSG00000083729	MGI:1313300	pseudogene	SH3 domain protein 2C, pseudogene 1
2	gene	23.823053	23.823227	positive	MGI_C57BL6J_5456100	Gm26323	ENSEMBL:ENSMUSG00000088368	MGI:5456100	unclassified non-coding RNA gene	predicted gene, 26323
2	pseudogene	23.908441	23.908590	positive	MGI_C57BL6J_3649898	Gm13392	ENSEMBL:ENSMUSG00000083373	MGI:3649898	pseudogene	predicted gene 13392
2	gene	24.002910	24.049758	negative	MGI_C57BL6J_2153181	Hnmt	NCBI_Gene:140483,ENSEMBL:ENSMUSG00000026986	MGI:2153181	protein coding gene	histamine N-methyltransferase
2	gene	24.071366	24.096595	negative	MGI_C57BL6J_2684058	Tbpl2	NCBI_Gene:227606,ENSEMBL:ENSMUSG00000061809	MGI:2684058	protein coding gene	TATA box binding protein like 2
2	gene	24.153161	24.160519	positive	MGI_C57BL6J_1916927	Il1f8	NCBI_Gene:69677,ENSEMBL:ENSMUSG00000026985	MGI:1916927	protein coding gene	interleukin 1 family, member 8
2	gene	24.171587	24.172073	positive	MGI_C57BL6J_1916936	2310066D07Rik	NA	NA	unclassified gene	RIKEN cDNA 2310066D07 gene
2	pseudogene	24.178834	24.180317	positive	MGI_C57BL6J_3650681	Gm13410	NCBI_Gene:215253,ENSEMBL:ENSMUSG00000083116	MGI:3650681	pseudogene	predicted gene 13410
2	gene	24.186476	24.193568	positive	MGI_C57BL6J_2449929	Il1f9	NCBI_Gene:215257,ENSEMBL:ENSMUSG00000044103	MGI:2449929	protein coding gene	interleukin 1 family, member 9
2	gene	24.215417	24.225702	positive	MGI_C57BL6J_1859324	Il1f6	NCBI_Gene:54448,ENSEMBL:ENSMUSG00000026984	MGI:1859324	protein coding gene	interleukin 1 family, member 6
2	gene	24.231868	24.233651	positive	MGI_C57BL6J_5610931	Gm37703	ENSEMBL:ENSMUSG00000104173	MGI:5610931	unclassified gene	predicted gene, 37703
2	pseudogene	24.261657	24.267451	negative	MGI_C57BL6J_3651609	Gm13409	NCBI_Gene:620156,ENSEMBL:ENSMUSG00000083172	MGI:3651609	pseudogene	predicted gene 13409
2	gene	24.276954	24.283426	positive	MGI_C57BL6J_1859325	Il1f5	NCBI_Gene:54450,ENSEMBL:ENSMUSG00000026983	MGI:1859325	protein coding gene	interleukin 1 family, member 5 (delta)
2	gene	24.291196	24.293820	positive	MGI_C57BL6J_2652548	Il1f10	NCBI_Gene:215274,ENSEMBL:ENSMUSG00000046845	MGI:2652548	protein coding gene	interleukin 1 family, member 10
2	gene	24.322424	24.322956	positive	MGI_C57BL6J_3651013	Gm13411	ENSEMBL:ENSMUSG00000085999	MGI:3651013	lncRNA gene	predicted gene 13411
2	gene	24.336853	24.351494	positive	MGI_C57BL6J_96547	Il1rn	NCBI_Gene:16181,ENSEMBL:ENSMUSG00000026981	MGI:96547	protein coding gene	interleukin 1 receptor antagonist
2	gene	24.367559	24.414954	positive	MGI_C57BL6J_2674093	Psd4	NCBI_Gene:215632,ENSEMBL:ENSMUSG00000026979	MGI:2674093	protein coding gene	pleckstrin and Sec7 domain containing 4
2	gene	24.420551	24.480095	negative	MGI_C57BL6J_97492	Pax8	NCBI_Gene:18510,ENSEMBL:ENSMUSG00000026976	MGI:97492	protein coding gene	paired box 8
2	gene	24.440418	24.486855	positive	MGI_C57BL6J_3651241	Gm13415	NCBI_Gene:102638285,ENSEMBL:ENSMUSG00000085057	MGI:3651241	lncRNA gene	predicted gene 13415
2	pseudogene	24.483495	24.484080	positive	MGI_C57BL6J_5521036	Gm27193	ENSEMBL:ENSMUSG00000099120	MGI:5521036	pseudogene	predicted gene 27193
2	pseudogene	24.494032	24.495717	positive	MGI_C57BL6J_3650378	Gm13418	NCBI_Gene:433410,ENSEMBL:ENSMUSG00000082307	MGI:3650378	pseudogene	predicted gene 13418
2	gene	24.522235	24.585542	positive	MGI_C57BL6J_5622654	Gm39769	NCBI_Gene:105244095	MGI:5622654	lncRNA gene	predicted gene, 39769
2	gene	24.545492	24.566697	negative	MGI_C57BL6J_3652159	Gm13417	ENSEMBL:ENSMUSG00000085330	MGI:3652159	lncRNA gene	predicted gene 13417
2	gene	24.588566	24.591225	positive	MGI_C57BL6J_5611611	Gm38383	ENSEMBL:ENSMUSG00000102591	MGI:5611611	unclassified gene	predicted gene, 38383
2	pseudogene	24.592573	24.594513	negative	MGI_C57BL6J_3652158	Gm13416	NCBI_Gene:664938,ENSEMBL:ENSMUSG00000084241	MGI:3652158	pseudogene	predicted gene 13416
2	gene	24.601365	24.601689	positive	MGI_C57BL6J_5455232	Gm25455	ENSEMBL:ENSMUSG00000088571	MGI:5455232	unclassified non-coding RNA gene	predicted gene, 25455
2	gene	24.603860	24.763200	negative	MGI_C57BL6J_88296	Cacna1b	NCBI_Gene:12287,ENSEMBL:ENSMUSG00000004113	MGI:88296	protein coding gene	calcium channel, voltage-dependent, N type, alpha 1B subunit
2	pseudogene	24.674701	24.675346	positive	MGI_C57BL6J_3651862	Gm13459	ENSEMBL:ENSMUSG00000083973	MGI:3651862	pseudogene	predicted gene 13459
2	gene	24.789928	24.919643	negative	MGI_C57BL6J_1924933	Ehmt1	NCBI_Gene:77683,ENSEMBL:ENSMUSG00000036893	MGI:1924933	protein coding gene	euchromatic histone methyltransferase 1
2	gene	24.874532	24.876329	negative	MGI_C57BL6J_5611375	Gm38147	ENSEMBL:ENSMUSG00000103162	MGI:5611375	unclassified gene	predicted gene, 38147
2	gene	24.889448	24.893866	negative	MGI_C57BL6J_5610367	Gm37139	ENSEMBL:ENSMUSG00000102875	MGI:5610367	unclassified gene	predicted gene, 37139
2	gene	24.925352	24.935335	negative	MGI_C57BL6J_2446136	Arrdc1	NCBI_Gene:215705,ENSEMBL:ENSMUSG00000026972	MGI:2446136	protein coding gene	arrestin domain containing 1
2	gene	24.936831	24.936956	positive	MGI_C57BL6J_5452652	Gm22875	ENSEMBL:ENSMUSG00000093190	MGI:5452652	miRNA gene	predicted gene, 22875
2	gene	24.949777	24.962075	positive	MGI_C57BL6J_1914437	Zmynd19	NCBI_Gene:67187,ENSEMBL:ENSMUSG00000026974	MGI:1914437	protein coding gene	zinc finger, MYND domain containing 19
2	gene	24.962171	24.973471	positive	MGI_C57BL6J_1914478	Dph7	NCBI_Gene:67228,ENSEMBL:ENSMUSG00000026975	MGI:1914478	protein coding gene	diphthamine biosynethesis 7
2	gene	24.972470	24.975098	negative	MGI_C57BL6J_1333816	Mrpl41	NCBI_Gene:107733,ENSEMBL:ENSMUSG00000036850	MGI:1333816	protein coding gene	mitochondrial ribosomal protein L41
2	gene	24.975306	25.054072	positive	MGI_C57BL6J_2385325	Pnpla7	NCBI_Gene:241274,ENSEMBL:ENSMUSG00000036833	MGI:2385325	protein coding gene	patatin-like phospholipase domain containing 7
2	pseudogene	24.985947	24.986499	positive	MGI_C57BL6J_3651012	Gm13370	NCBI_Gene:100046290,ENSEMBL:ENSMUSG00000084383	MGI:3651012	pseudogene	predicted gene 13370
2	pseudogene	24.993197	24.995894	negative	MGI_C57BL6J_3651010	Gm13369	NCBI_Gene:102638359,ENSEMBL:ENSMUSG00000083796	MGI:3651010	pseudogene	predicted gene 13369
2	gene	25.006152	25.006258	negative	MGI_C57BL6J_5455295	Gm25518	ENSEMBL:ENSMUSG00000065798	MGI:5455295	snRNA gene	predicted gene, 25518
2	gene	25.031350	25.031453	negative	MGI_C57BL6J_5454652	Gm24875	ENSEMBL:ENSMUSG00000089513	MGI:5454652	snRNA gene	predicted gene, 24875
2	gene	25.054355	25.062881	positive	MGI_C57BL6J_1861755	Nsmf	NCBI_Gene:56876,ENSEMBL:ENSMUSG00000006476	MGI:1861755	protein coding gene	NMDA receptor synaptonuclear signaling and neuronal migration factor
2	gene	25.055109	25.055175	negative	MGI_C57BL6J_5454105	Gm24328	ENSEMBL:ENSMUSG00000092845	MGI:5454105	miRNA gene	predicted gene, 24328
2	gene	25.059811	25.059873	positive	MGI_C57BL6J_5531397	Mir7664	miRBase:MI0025004,NCBI_Gene:102465989,ENSEMBL:ENSMUSG00000099320	MGI:5531397	miRNA gene	microRNA 7664
2	gene	25.070376	25.072673	negative	MGI_C57BL6J_5622655	Gm39770	NCBI_Gene:105244096	MGI:5622655	lncRNA gene	predicted gene, 39770
2	gene	25.080123	25.085719	positive	MGI_C57BL6J_1919340	Entpd8	NCBI_Gene:72090,ENSEMBL:ENSMUSG00000036813	MGI:1919340	protein coding gene	ectonucleoside triphosphate diphosphohydrolase 8
2	gene	25.085667	25.095205	negative	MGI_C57BL6J_2449980	Noxa1	NCBI_Gene:241275,ENSEMBL:ENSMUSG00000036805	MGI:2449980	protein coding gene	NADPH oxidase activator 1
2	gene	25.121680	25.165932	negative	MGI_C57BL6J_3651242	Gm13387	NCBI_Gene:329358,ENSEMBL:ENSMUSG00000087028	MGI:3651242	lncRNA gene	predicted gene 13387
2	gene	25.180758	25.183339	positive	MGI_C57BL6J_1914372	Nrarp	NCBI_Gene:67122,ENSEMBL:ENSMUSG00000078202	MGI:1914372	protein coding gene	Notch-regulated ankyrin repeat protein
2	gene	25.180781	25.183339	negative	MGI_C57BL6J_5611515	Gm38287	ENSEMBL:ENSMUSG00000103217	MGI:5611515	lncRNA gene	predicted gene, 38287
2	gene	25.192720	25.196886	negative	MGI_C57BL6J_2442720	Tor4a	NCBI_Gene:227612,ENSEMBL:ENSMUSG00000059555	MGI:2442720	protein coding gene	torsin family 4, member A
2	gene	25.199712	25.211489	negative	MGI_C57BL6J_1931035	Nelfb	NCBI_Gene:58202,ENSEMBL:ENSMUSG00000013465	MGI:1931035	protein coding gene	negative elongation factor complex member B
2	gene	25.208623	25.208727	positive	MGI_C57BL6J_5452349	Gm22572	ENSEMBL:ENSMUSG00000064919	MGI:5452349	snRNA gene	predicted gene, 22572
2	gene	25.212207	25.218701	negative	MGI_C57BL6J_1921722	Stpg3	NCBI_Gene:74472,ENSEMBL:ENSMUSG00000036770	MGI:1921722	protein coding gene	sperm tail PG rich repeat containing 3
2	gene	25.214719	25.222281	positive	MGI_C57BL6J_3605773	Fam166a	NCBI_Gene:68222,ENSEMBL:ENSMUSG00000026969	MGI:3605773	protein coding gene	family with sequence similarity 166, member A
2	gene	25.222158	25.224702	negative	MGI_C57BL6J_1915472	Tubb4b	NCBI_Gene:227613,ENSEMBL:ENSMUSG00000036752	MGI:1915472	protein coding gene	tubulin, beta 4B class IVB
2	gene	25.228897	25.234364	negative	MGI_C57BL6J_2159410	Slc34a3	NCBI_Gene:142681,ENSEMBL:ENSMUSG00000006469	MGI:2159410	protein coding gene	solute carrier family 34 (sodium phosphate), member 3
2	gene	25.234476	25.236787	negative	MGI_C57BL6J_2685603	Rnf224	NCBI_Gene:329360,ENSEMBL:ENSMUSG00000089953	MGI:2685603	protein coding gene	ring finger protein 224
2	gene	25.238818	25.242452	negative	MGI_C57BL6J_1915109	Cysrt1	NCBI_Gene:67859,ENSEMBL:ENSMUSG00000036731	MGI:1915109	protein coding gene	cysteine rich tail 1
2	gene	25.242255	25.244262	positive	MGI_C57BL6J_1916096	Rnf208	NCBI_Gene:68846,ENSEMBL:ENSMUSG00000044628	MGI:1916096	protein coding gene	ring finger protein 208
2	gene	25.244813	25.256022	negative	MGI_C57BL6J_1926047	Ndor1	NCBI_Gene:78797,ENSEMBL:ENSMUSG00000006471,ENSEMBL:ENSMUSG00000115018,ENSEMBL:ENSMUSG00000115074	MGI:1926047	protein coding gene	NADPH dependent diflavin oxidoreductase 1
2	gene	25.255439	25.256352	positive	MGI_C57BL6J_2443597	Tmem203	NCBI_Gene:227615,ENSEMBL:ENSMUSG00000078201	MGI:2443597	protein coding gene	transmembrane protein 203
2	gene	25.262598	25.269886	positive	MGI_C57BL6J_2139535	Tprn	NCBI_Gene:97031,ENSEMBL:ENSMUSG00000048707	MGI:2139535	protein coding gene	taperin
2	gene	25.271039	25.272438	negative	MGI_C57BL6J_1915725	Ssna1	NCBI_Gene:68475,ENSEMBL:ENSMUSG00000026966	MGI:1915725	protein coding gene	SS nuclear autoantigen 1
2	gene	25.272466	25.285916	positive	MGI_C57BL6J_2139135	Anapc2	NCBI_Gene:99152,ENSEMBL:ENSMUSG00000026965	MGI:2139135	protein coding gene	anaphase promoting complex subunit 2
2	gene	25.288145	25.289189	positive	MGI_C57BL6J_1925467	Tmem210	NCBI_Gene:78217,ENSEMBL:ENSMUSG00000026963	MGI:1925467	protein coding gene	transmembrane protein 210
2	gene	25.289911	25.291193	positive	MGI_C57BL6J_2385129	Lrrc26	NCBI_Gene:227618,ENSEMBL:ENSMUSG00000026961	MGI:2385129	protein coding gene	leucine rich repeat containing 26
2	gene	25.291177	25.319199	negative	MGI_C57BL6J_95819	Grin1	NCBI_Gene:14810,ENSEMBL:ENSMUSG00000026959	MGI:95819	protein coding gene	glutamate receptor, ionotropic, NMDA1 (zeta 1)
2	gene	25.291220	25.298928	positive	MGI_C57BL6J_2443867	Grin1os	NCBI_Gene:320354,ENSEMBL:ENSMUSG00000085830	MGI:2443867	antisense lncRNA gene	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand
2	gene	25.300288	25.300605	negative	MGI_C57BL6J_1925907	2900034K13Rik	NA	NA	unclassified gene	RIKEN cDNA 2900034K13 gene
2	gene	25.327450	25.332571	negative	MGI_C57BL6J_3035233	AA543186	NCBI_Gene:100272219,ENSEMBL:ENSMUSG00000097345	MGI:3035233	lncRNA gene	expressed sequence AA543186
2	gene	25.332338	25.352213	positive	MGI_C57BL6J_2684954	Man1b1	NCBI_Gene:227619,ENSEMBL:ENSMUSG00000036646	MGI:2684954	protein coding gene	mannosidase, alpha, class 1B, member 1
2	gene	25.339651	25.339745	positive	MGI_C57BL6J_5454997	Gm25220	ENSEMBL:ENSMUSG00000088171	MGI:5454997	snRNA gene	predicted gene, 25220
2	gene	25.352276	25.356545	negative	MGI_C57BL6J_1933213	Dpp7	NCBI_Gene:83768,ENSEMBL:ENSMUSG00000026958	MGI:1933213	protein coding gene	dipeptidylpeptidase 7
2	gene	25.357507	25.358001	positive	MGI_C57BL6J_5826369	Gm46732	NCBI_Gene:108168741	MGI:5826369	lncRNA gene	predicted gene, 46732
2	gene	25.359889	25.366097	negative	MGI_C57BL6J_2443318	Uap1l1	NCBI_Gene:227620,ENSEMBL:ENSMUSG00000026956	MGI:2443318	protein coding gene	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
2	gene	25.372035	25.378213	positive	MGI_C57BL6J_1919330	Sapcd2	NCBI_Gene:72080,ENSEMBL:ENSMUSG00000026955	MGI:1919330	protein coding gene	suppressor APC domain containing 2
2	gene	25.395874	25.401323	positive	MGI_C57BL6J_1096863	Entpd2	NCBI_Gene:12496,ENSEMBL:ENSMUSG00000015085	MGI:1096863	protein coding gene	ectonucleoside triphosphate diphosphohydrolase 2
2	gene	25.399351	25.409494	positive	MGI_C57BL6J_1099802	Npdc1	NCBI_Gene:18146,ENSEMBL:ENSMUSG00000015094	MGI:1099802	protein coding gene	neural proliferation, differentiation and control 1
2	gene	25.422351	25.426374	positive	MGI_C57BL6J_107692	Fut7	NCBI_Gene:14347,ENSEMBL:ENSMUSG00000036587	MGI:107692	protein coding gene	fucosyltransferase 7
2	gene	25.428604	25.448544	positive	MGI_C57BL6J_99606	Abca2	NCBI_Gene:11305,ENSEMBL:ENSMUSG00000026944	MGI:99606	protein coding gene	ATP-binding cassette, sub-family A (ABC1), member 2
2	gene	25.442779	25.442834	positive	MGI_C57BL6J_4834301	Mir3087	miRBase:MI0014080,NCBI_Gene:100526555,ENSEMBL:ENSMUSG00000104741	MGI:4834301	miRNA gene	microRNA 3087
2	gene	25.455120	25.461276	negative	MGI_C57BL6J_2442831	Paxx	NCBI_Gene:227622,ENSEMBL:ENSMUSG00000047617	MGI:2442831	protein coding gene	non-homologous end joining factor
2	gene	25.456838	25.458776	positive	MGI_C57BL6J_1916704	Clic3	NCBI_Gene:69454,ENSEMBL:ENSMUSG00000015093	MGI:1916704	protein coding gene	chloride intracellular channel 3
2	gene	25.466709	25.470110	negative	MGI_C57BL6J_99261	Ptgds	NCBI_Gene:19215,ENSEMBL:ENSMUSG00000015090	MGI:99261	protein coding gene	prostaglandin D2 synthase (brain)
2	gene	25.475304	25.478556	negative	MGI_C57BL6J_5594446	Gm35287	NCBI_Gene:102638811	MGI:5594446	lncRNA gene	predicted gene, 35287
2	gene	25.490845	25.494061	negative	MGI_C57BL6J_1924951	Lcn12	NCBI_Gene:77701,ENSEMBL:ENSMUSG00000026943	MGI:1924951	protein coding gene	lipocalin 12
2	gene	25.498650	25.501719	negative	MGI_C57BL6J_88237	C8g	NCBI_Gene:69379,ENSEMBL:ENSMUSG00000015083	MGI:88237	protein coding gene	complement component 8, gamma polypeptide
2	gene	25.500750	25.505471	positive	MGI_C57BL6J_1354731	Fbxw5	NCBI_Gene:30839,ENSEMBL:ENSMUSG00000015095	MGI:1354731	protein coding gene	F-box and WD-40 domain protein 5
2	gene	25.517982	25.546940	negative	MGI_C57BL6J_101835	Traf2	NCBI_Gene:22030,ENSEMBL:ENSMUSG00000026942	MGI:101835	protein coding gene	TNF receptor-associated factor 2
2	pseudogene	25.543479	25.543926	positive	MGI_C57BL6J_3651454	Gm13433	NCBI_Gene:102638962,ENSEMBL:ENSMUSG00000083043	MGI:3651454	pseudogene	predicted gene 13433
2	gene	25.547922	25.557811	negative	MGI_C57BL6J_5594635	Gm35476	NCBI_Gene:102639074	MGI:5594635	lncRNA gene	predicted gene, 35476
2	pseudogene	25.554309	25.554549	negative	MGI_C57BL6J_3651455	Gm13432	ENSEMBL:ENSMUSG00000083528	MGI:3651455	pseudogene	predicted gene 13432
2	gene	25.557821	25.562082	positive	MGI_C57BL6J_1891227	Edf1	NCBI_Gene:59022,ENSEMBL:ENSMUSG00000015092	MGI:1891227	protein coding gene	endothelial differentiation-related factor 1
2	gene	25.563112	25.574845	negative	MGI_C57BL6J_2685841	Mamdc4	NCBI_Gene:381352,ENSEMBL:ENSMUSG00000026941	MGI:2685841	protein coding gene	MAM domain containing 4
2	gene	25.573430	25.575224	negative	MGI_C57BL6J_1922704	Phpt1	NCBI_Gene:75454,ENSEMBL:ENSMUSG00000036504	MGI:1922704	protein coding gene	phosphohistidine phosphatase 1
2	gene	25.575416	25.581757	negative	MGI_C57BL6J_2685842	Ajm1	NCBI_Gene:381353,ENSEMBL:ENSMUSG00000029419	MGI:2685842	protein coding gene	apical junction component 1
2	gene	25.575431	25.580099	positive	MGI_C57BL6J_5477196	Gm26702	ENSEMBL:ENSMUSG00000097872	MGI:5477196	lncRNA gene	predicted gene, 26702
2	gene	25.583018	25.608521	negative	MGI_C57BL6J_2442633	Rabl6	NCBI_Gene:227624,ENSEMBL:ENSMUSG00000015087	MGI:2442633	protein coding gene	RAB, member RAS oncogene family-like 6
2	gene	25.607892	25.631761	positive	MGI_C57BL6J_3701343	Fcnaos	NCBI_Gene:102639143,ENSEMBL:ENSMUSG00000052403	MGI:3701343	antisense lncRNA gene	ficolin A, opposite strand
2	gene	25.608629	25.617678	negative	MGI_C57BL6J_1924308	Ccdc183	NCBI_Gene:77058,ENSEMBL:ENSMUSG00000026940	MGI:1924308	protein coding gene	coiled-coil domain containing 183
2	gene	25.620066	25.622040	negative	MGI_C57BL6J_1098773	Tmem141	NCBI_Gene:51875,ENSEMBL:ENSMUSG00000026939	MGI:1098773	protein coding gene	transmembrane protein 141
2	gene	25.624666	25.635444	negative	MGI_C57BL6J_1340905	Fcna	NCBI_Gene:14133,ENSEMBL:ENSMUSG00000026938	MGI:1340905	protein coding gene	ficolin A
2	gene	25.635518	25.640260	positive	MGI_C57BL6J_5594789	Gm35630	NCBI_Gene:102639282	MGI:5594789	lncRNA gene	predicted gene, 35630
2	gene	25.644097	25.648801	positive	MGI_C57BL6J_5592908	Lcn15	NCBI_Gene:102636769,ENSEMBL:ENSMUSG00000118473	MGI:5592908	protein coding gene	lipocalin 15
2	gene	25.653118	25.656217	positive	MGI_C57BL6J_2135945	Lcn8	NCBI_Gene:78076,ENSEMBL:ENSMUSG00000036449	MGI:2135945	protein coding gene	lipocalin 8
2	gene	25.657932	25.662230	positive	MGI_C57BL6J_1277241	Lcn5	NCBI_Gene:13863,ENSEMBL:ENSMUSG00000026937	MGI:1277241	protein coding gene	lipocalin 5
2	gene	25.676631	25.681608	positive	MGI_C57BL6J_3045364	Lcn6	NCBI_Gene:620709,ENSEMBL:ENSMUSG00000045684	MGI:3045364	protein coding gene	lipocalin 6
2	gene	25.682726	25.686081	positive	MGI_C57BL6J_1925000	Lcn10	NCBI_Gene:332578,ENSEMBL:ENSMUSG00000047356	MGI:1925000	protein coding gene	lipocalin 10
2	gene	25.697576	25.703326	positive	MGI_C57BL6J_2387617	Obp2a	NCBI_Gene:227627,ENSEMBL:ENSMUSG00000062061	MGI:2387617	protein coding gene	odorant binding protein 2A
2	gene	25.705850	25.709716	negative	MGI_C57BL6J_3603401	A230005M16Rik	ENSEMBL:ENSMUSG00000087612	MGI:3603401	lncRNA gene	RIKEN cDNA A230005M16 gene
2	gene	25.706739	25.707721	positive	MGI_C57BL6J_88184	Bmyc	NCBI_Gene:107771,ENSEMBL:ENSMUSG00000049086	MGI:88184	protein coding gene	brain expressed myelocytomatosis oncogene
2	gene	25.714109	25.740115	positive	MGI_C57BL6J_3651927	Obp2b	NCBI_Gene:383678,ENSEMBL:ENSMUSG00000079539	MGI:3651927	protein coding gene	odorant binding protein 2B
2	gene	25.765569	25.768099	positive	MGI_C57BL6J_102669	Lcn3	NCBI_Gene:16820,ENSEMBL:ENSMUSG00000026936	MGI:102669	protein coding gene	lipocalin 3
2	gene	25.771820	25.815936	negative	MGI_C57BL6J_1918353	Glt6d1	NCBI_Gene:71103,ENSEMBL:ENSMUSG00000036401	MGI:1918353	protein coding gene	glycosyltransferase 6 domain containing 1
2	gene	25.777017	25.780279	positive	MGI_C57BL6J_2684955	Lcn11	NCBI_Gene:227630,ENSEMBL:ENSMUSG00000069080	MGI:2684955	protein coding gene	lipocalin 11
2	gene	25.782257	25.787022	positive	MGI_C57BL6J_3651926	Gm13539	NCBI_Gene:620858,ENSEMBL:ENSMUSG00000085484	MGI:3651926	lncRNA gene	predicted gene 13539
2	gene	25.783940	25.794650	negative	MGI_C57BL6J_3702043	Gm13538	ENSEMBL:ENSMUSG00000090073	MGI:3702043	lncRNA gene	predicted gene 13538
2	gene	25.814503	25.815771	positive	MGI_C57BL6J_5594848	Gm35689	NCBI_Gene:102639357	MGI:5594848	lncRNA gene	predicted gene, 35689
2	gene	25.823087	25.825546	positive	MGI_C57BL6J_1924954	Lcn9	NCBI_Gene:77704,ENSEMBL:ENSMUSG00000023210	MGI:1924954	protein coding gene	lipocalin 9
2	gene	25.842995	25.847248	negative	MGI_C57BL6J_2684956	Sohlh1	NCBI_Gene:227631,ENSEMBL:ENSMUSG00000059625	MGI:2684956	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 1
2	gene	25.863734	25.918273	positive	MGI_C57BL6J_1924627	Kcnt1	NCBI_Gene:227632,ENSEMBL:ENSMUSG00000058740	MGI:1924627	protein coding gene	potassium channel, subfamily T, member 1
2	gene	25.923344	25.924809	negative	MGI_C57BL6J_1923393	6230426I18Rik	NA	NA	unclassified gene	RIKEN cDNA 6230426I18 gene
2	gene	25.926838	25.983458	negative	MGI_C57BL6J_3036242	Camsap1	NCBI_Gene:227634,ENSEMBL:ENSMUSG00000026933	MGI:3036242	protein coding gene	calmodulin regulated spectrin-associated protein 1
2	pseudogene	25.994547	25.995183	negative	MGI_C57BL6J_3649446	Gm13542	ENSEMBL:ENSMUSG00000082357	MGI:3649446	pseudogene	predicted gene 13542
2	gene	25.996958	26.021781	negative	MGI_C57BL6J_1920995	Ubac1	NCBI_Gene:98766,ENSEMBL:ENSMUSG00000036352	MGI:1920995	protein coding gene	ubiquitin associated domain containing 1
2	gene	26.055535	26.123220	negative	MGI_C57BL6J_1915241	Nacc2	NCBI_Gene:67991,ENSEMBL:ENSMUSG00000026932	MGI:1915241	protein coding gene	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
2	gene	26.059010	26.060275	positive	MGI_C57BL6J_3650406	Gm13554	ENSEMBL:ENSMUSG00000087515	MGI:3650406	lncRNA gene	predicted gene 13554
2	pseudogene	26.136807	26.140521	negative	MGI_C57BL6J_1924939	Tmem250-ps	NCBI_Gene:109299,ENSEMBL:ENSMUSG00000087679	MGI:1924939	pseudogene	transmembrane protein 250, pseudogene
2	gene	26.138546	26.139543	positive	MGI_C57BL6J_1916345	1810012K08Rik	ENSEMBL:ENSMUSG00000087595	MGI:1916345	lncRNA gene	RIKEN cDNA 1810012K08 gene
2	gene	26.174761	26.178580	negative	MGI_C57BL6J_5594904	Gm35745	NCBI_Gene:102639430	MGI:5594904	lncRNA gene	predicted gene, 35745
2	gene	26.186729	26.191678	negative	MGI_C57BL6J_3650620	Gm13553	ENSEMBL:ENSMUSG00000085545	MGI:3650620	lncRNA gene	predicted gene 13553
2	gene	26.200212	26.208289	negative	MGI_C57BL6J_102673	Lhx3	NCBI_Gene:16871,ENSEMBL:ENSMUSG00000026934	MGI:102673	protein coding gene	LIM homeobox protein 3
2	gene	26.206702	26.209283	positive	MGI_C57BL6J_5521039	Gm27196	ENSEMBL:ENSMUSG00000098977	MGI:5521039	lncRNA gene	predicted gene 27196
2	gene	26.208637	26.237525	negative	MGI_C57BL6J_2387194	Qsox2	NCBI_Gene:227638,ENSEMBL:ENSMUSG00000036327	MGI:2387194	protein coding gene	quiescin Q6 sulfhydryl oxidase 2
2	gene	26.243449	26.300476	negative	MGI_C57BL6J_3045295	Ccdc187	NCBI_Gene:329366,ENSEMBL:ENSMUSG00000048038	MGI:3045295	protein coding gene	coiled-coil domain containing 187
2	gene	26.243469	26.257554	negative	MGI_C57BL6J_1924731	C030048H21Rik	NA	NA	protein coding gene	RIKEN cDNA C030048H21 gene
2	gene	26.293958	26.302044	positive	MGI_C57BL6J_5594966	Gm35807	NCBI_Gene:102639508	MGI:5594966	lncRNA gene	predicted gene, 35807
2	gene	26.314574	26.348237	positive	MGI_C57BL6J_1915089	Gpsm1	NCBI_Gene:67839,ENSEMBL:ENSMUSG00000026930	MGI:1915089	protein coding gene	G-protein signalling modulator 1 (AGS3-like, C. elegans)
2	gene	26.348118	26.352110	negative	MGI_C57BL6J_106559	Dnlz	NCBI_Gene:52838,ENSEMBL:ENSMUSG00000075467	MGI:106559	protein coding gene	DNL-type zinc finger
2	gene	26.352176	26.361530	negative	MGI_C57BL6J_2685628	Card9	NCBI_Gene:332579,ENSEMBL:ENSMUSG00000026928	MGI:2685628	protein coding gene	caspase recruitment domain family, member 9
2	gene	26.352645	26.371952	positive	MGI_C57BL6J_3651238	Gm13562	ENSEMBL:ENSMUSG00000086779	MGI:3651238	lncRNA gene	predicted gene 13562
2	gene	26.362765	26.380665	negative	MGI_C57BL6J_2443935	Snapc4	NCBI_Gene:227644,ENSEMBL:ENSMUSG00000036281	MGI:2443935	protein coding gene	small nuclear RNA activating complex, polypeptide 4
2	gene	26.381526	26.389018	positive	MGI_C57BL6J_3652052	Gm13563	ENSEMBL:ENSMUSG00000085767	MGI:3652052	lncRNA gene	predicted gene 13563
2	gene	26.382798	26.389316	negative	MGI_C57BL6J_1915362	Entr1	NCBI_Gene:68112,ENSEMBL:ENSMUSG00000026927	MGI:1915362	protein coding gene	endosome associated trafficking regulator 1
2	gene	26.383358	26.385156	positive	MGI_C57BL6J_1924526	9430022A06Rik	NA	NA	unclassified gene	RIKEN cDNA 9430022A06 gene
2	gene	26.389339	26.397122	positive	MGI_C57BL6J_1918568	Pmpca	NCBI_Gene:66865,ENSEMBL:ENSMUSG00000026926	MGI:1918568	protein coding gene	peptidase (mitochondrial processing) alpha
2	gene	26.396249	26.409219	negative	MGI_C57BL6J_1927753	Inpp5e	NCBI_Gene:64436,ENSEMBL:ENSMUSG00000026925	MGI:1927753	protein coding gene	inositol polyphosphate-5-phosphatase E
2	gene	26.409431	26.446060	negative	MGI_C57BL6J_2139207	Sec16a	NCBI_Gene:227648,ENSEMBL:ENSMUSG00000026924	MGI:2139207	protein coding gene	SEC16 homolog A, endoplasmic reticulum export factor
2	gene	26.445605	26.459390	positive	MGI_C57BL6J_3698435	0610009E02Rik	NCBI_Gene:100125929,ENSEMBL:ENSMUSG00000086714	MGI:3698435	lncRNA gene	RIKEN cDNA 0610009E02 gene
2	gene	26.457144	26.458316	positive	MGI_C57BL6J_3702049	Gm13568	ENSEMBL:ENSMUSG00000085543	MGI:3702049	lncRNA gene	predicted gene 13568
2	gene	26.457902	26.516663	negative	MGI_C57BL6J_97363	Notch1	NCBI_Gene:18128,ENSEMBL:ENSMUSG00000026923	MGI:97363	protein coding gene	notch 1
2	gene	26.470059	26.470119	negative	MGI_C57BL6J_5530913	Mir6996	miRBase:MI0022844,NCBI_Gene:102465602,ENSEMBL:ENSMUSG00000098548	MGI:5530913	miRNA gene	microRNA 6996
2	gene	26.503927	26.505347	positive	MGI_C57BL6J_5595137	Gm35978	NCBI_Gene:102639736	MGI:5595137	lncRNA gene	predicted gene, 35978
2	gene	26.547417	26.555171	negative	MGI_C57BL6J_5595330	Gm36171	NCBI_Gene:102639989	MGI:5595330	lncRNA gene	predicted gene, 36171
2	pseudogene	26.558625	26.559193	positive	MGI_C57BL6J_3649552	Gm13358	ENSEMBL:ENSMUSG00000082864	MGI:3649552	pseudogene	predicted gene 13358
2	gene	26.580014	26.593120	positive	MGI_C57BL6J_2449923	Egfl7	NCBI_Gene:353156,ENSEMBL:ENSMUSG00000026921	MGI:2449923	protein coding gene	EGF-like domain 7
2	gene	26.586639	26.635634	positive	MGI_C57BL6J_5141997	Gm20532	ENSEMBL:ENSMUSG00000092356	MGI:5141997	protein coding gene	predicted gene 20532
2	gene	26.591357	26.591429	positive	MGI_C57BL6J_2676811	Mir126a	miRBase:MI0000153,NCBI_Gene:387145,ENSEMBL:ENSMUSG00000065540	MGI:2676811	miRNA gene	microRNA 126a
2	gene	26.591363	26.591420	negative	MGI_C57BL6J_5562755	Mir126b	miRBase:MI0025035,NCBI_Gene:102465787,ENSEMBL:ENSMUSG00000105799	MGI:5562755	miRNA gene	microRNA 126b
2	gene	26.593057	26.604417	negative	MGI_C57BL6J_1914762	Agpat2	NCBI_Gene:67512,ENSEMBL:ENSMUSG00000026922	MGI:1914762	protein coding gene	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
2	gene	26.605994	26.617362	negative	MGI_C57BL6J_5622657	Gm39772	NCBI_Gene:105244098	MGI:5622657	lncRNA gene	predicted gene, 39772
2	gene	26.628457	26.636497	positive	MGI_C57BL6J_1927576	Dipk1b	NCBI_Gene:56279,ENSEMBL:ENSMUSG00000036186	MGI:1927576	protein coding gene	divergent protein kinase domain 1B
2	gene	26.637176	26.640244	negative	MGI_C57BL6J_1919341	Snhg7	NCBI_Gene:72091	MGI:1919341	lncRNA gene	small nucleolar RNA host gene 7
2	gene	26.637847	26.637985	negative	MGI_C57BL6J_4360066	Snora43	NCBI_Gene:100306955,ENSEMBL:ENSMUSG00000064858,ENSEMBL:ENSMUSG00000097052	MGI:4360066	snoRNA gene	small nucleolar RNA, H/ACA box 43
2	gene	26.639190	26.639321	negative	MGI_C57BL6J_4360060	Snora17	NCBI_Gene:100306954,ENSEMBL:ENSMUSG00000077192	MGI:4360060	snoRNA gene	small nucleolar RNA, H/ACA box 17
2	gene	26.640372	26.645944	positive	MGI_C57BL6J_3045374	Snhg7os	NCBI_Gene:329369,ENSEMBL:ENSMUSG00000086775	MGI:3045374	antisense lncRNA gene	small nucleolar RNA host gene 7, opposite strand
2	gene	26.648328	26.652042	positive	MGI_C57BL6J_3780410	Gm2240	NCBI_Gene:100039446	MGI:3780410	protein coding gene	predicted gene 2240
2	gene	26.667674	26.671282	negative	MGI_C57BL6J_102668	Lcn4	NCBI_Gene:16821,ENSEMBL:ENSMUSG00000026919	MGI:102668	protein coding gene	lipocalin 4
2	pseudogene	26.722387	26.723081	negative	MGI_C57BL6J_3651940	Gm13359	NCBI_Gene:669582,ENSEMBL:ENSMUSG00000082951	MGI:3651940	pseudogene	predicted gene 13359
2	gene	26.731726	26.736753	positive	MGI_C57BL6J_5622658	Gm39773	NCBI_Gene:105244099	MGI:5622658	protein coding gene	predicted gene, 39773
2	gene	26.782155	26.787257	negative	MGI_C57BL6J_5622659	Gm39774	NCBI_Gene:105244100	MGI:5622659	protein coding gene	predicted gene, 39774
2	gene	26.842496	26.864995	negative	MGI_C57BL6J_2135738	Abo	NCBI_Gene:80908,ENSEMBL:ENSMUSG00000015787	MGI:2135738	protein coding gene	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)
2	gene	26.888628	26.902879	negative	MGI_C57BL6J_98447	Surf6	NCBI_Gene:20935,ENSEMBL:ENSMUSG00000036160	MGI:98447	protein coding gene	surfeit gene 6
2	gene	26.905262	26.910677	negative	MGI_C57BL6J_98446	Med22	NCBI_Gene:20933,ENSEMBL:ENSMUSG00000015776	MGI:98446	protein coding gene	mediator complex subunit 22
2	gene	26.910725	26.913318	positive	MGI_C57BL6J_1353472	Rpl7a	NCBI_Gene:27176,ENSEMBL:ENSMUSG00000062647	MGI:1353472	protein coding gene	ribosomal protein L7A
2	gene	26.911261	26.911334	positive	MGI_C57BL6J_5453746	Gm23969	ENSEMBL:ENSMUSG00000065258	MGI:5453746	snoRNA gene	predicted gene, 23969
2	gene	26.912218	26.912291	positive	MGI_C57BL6J_5452656	Gm22879	ENSEMBL:ENSMUSG00000064829	MGI:5452656	snoRNA gene	predicted gene, 22879
2	gene	26.912530	26.912600	positive	MGI_C57BL6J_5453911	Gm24134	ENSEMBL:ENSMUSG00000065295	MGI:5453911	snoRNA gene	predicted gene, 24134
2	gene	26.913378	26.916530	negative	MGI_C57BL6J_98443	Surf1	NCBI_Gene:20930,ENSEMBL:ENSMUSG00000015790	MGI:98443	protein coding gene	surfeit gene 1
2	gene	26.916365	26.920183	positive	MGI_C57BL6J_98444	Surf2	NCBI_Gene:20931,ENSEMBL:ENSMUSG00000014873	MGI:98444	protein coding gene	surfeit gene 2
2	gene	26.920040	26.933928	negative	MGI_C57BL6J_98445	Surf4	NCBI_Gene:20932,ENSEMBL:ENSMUSG00000014867	MGI:98445	protein coding gene	surfeit gene 4
2	gene	26.928248	26.933268	negative	MGI_C57BL6J_5595750	Gm36591	NCBI_Gene:102640555	MGI:5595750	lncRNA gene	predicted gene, 36591
2	gene	26.933519	26.953496	positive	MGI_C57BL6J_2685557	Stkld1	NCBI_Gene:279029,ENSEMBL:ENSMUSG00000049897	MGI:2685557	protein coding gene	serine/threonine kinase-like domain containing 1
2	gene	26.949199	26.952664	negative	MGI_C57BL6J_5622660	Gm39775	NCBI_Gene:105244101	MGI:5622660	lncRNA gene	predicted gene, 39775
2	gene	26.953563	26.964537	negative	MGI_C57BL6J_2684957	Rexo4	NCBI_Gene:227656,ENSEMBL:ENSMUSG00000052406	MGI:2684957	protein coding gene	REX4, 3’-5’ exonuclease
2	gene	26.970009	26.975684	negative	MGI_C57BL6J_5595808	Gm36649	NCBI_Gene:102640631	MGI:5595808	lncRNA gene	predicted gene, 36649
2	gene	26.973416	27.009628	positive	MGI_C57BL6J_2685556	Adamts13	NCBI_Gene:279028,ENSEMBL:ENSMUSG00000014852	MGI:2685556	protein coding gene	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13
2	gene	27.009855	27.021089	positive	MGI_C57BL6J_1924317	Cacfd1	NCBI_Gene:381356,ENSEMBL:ENSMUSG00000015488	MGI:1924317	protein coding gene	calcium channel flower domain containing 1
2	gene	27.021363	27.027998	negative	MGI_C57BL6J_2443286	Slc2a6	NCBI_Gene:227659,ENSEMBL:ENSMUSG00000036067	MGI:2443286	protein coding gene	solute carrier family 2 (facilitated glucose transporter), member 6
2	pseudogene	27.034680	27.035557	positive	MGI_C57BL6J_3651605	Gm13397	NCBI_Gene:665315,ENSEMBL:ENSMUSG00000083335	MGI:3651605	pseudogene	predicted gene 13397
2	gene	27.036679	27.040858	positive	MGI_C57BL6J_3652315	Gm13398	NCBI_Gene:102640749,ENSEMBL:ENSMUSG00000087364	MGI:3652315	lncRNA gene	predicted gene 13398
2	gene	27.061636	27.072179	negative	MGI_C57BL6J_1913389	Mymk	NCBI_Gene:66139,ENSEMBL:ENSMUSG00000009214	MGI:1913389	protein coding gene	myomaker, myoblast fusion factor
2	gene	27.079340	27.108981	positive	MGI_C57BL6J_1925044	Adamtsl2	NCBI_Gene:77794,ENSEMBL:ENSMUSG00000036040	MGI:1925044	protein coding gene	ADAMTS-like 2
2	gene	27.100759	27.102705	negative	MGI_C57BL6J_5596041	Gm36882	NCBI_Gene:102640936	MGI:5596041	lncRNA gene	predicted gene, 36882
2	gene	27.110379	27.142491	negative	MGI_C57BL6J_1926106	Fam163b	NCBI_Gene:109349,ENSEMBL:ENSMUSG00000009216	MGI:1926106	protein coding gene	family with sequence similarity 163, member B
2	gene	27.144898	27.162703	negative	MGI_C57BL6J_3652314	Dbhos	NCBI_Gene:329371,ENSEMBL:ENSMUSG00000085008	MGI:3652314	antisense lncRNA gene	dopamine beta hydroxylase, opposite strand
2	gene	27.165233	27.183204	positive	MGI_C57BL6J_94864	Dbh	NCBI_Gene:13166,ENSEMBL:ENSMUSG00000000889	MGI:94864	protein coding gene	dopamine beta hydroxylase
2	gene	27.188393	27.248337	negative	MGI_C57BL6J_2183102	Sardh	NCBI_Gene:192166,ENSEMBL:ENSMUSG00000009614	MGI:2183102	protein coding gene	sarcosine dehydrogenase
2	gene	27.189382	27.234710	positive	MGI_C57BL6J_4937898	Sardhos	ENSEMBL:ENSMUSG00000091192	MGI:4937898	antisense lncRNA gene	sarcosine dehydrogenase, opposite strand
2	gene	27.262104	27.427608	negative	MGI_C57BL6J_102718	Vav2	NCBI_Gene:22325,ENSEMBL:ENSMUSG00000009621	MGI:102718	protein coding gene	vav 2 oncogene
2	gene	27.326704	27.331297	positive	MGI_C57BL6J_3035071	AA645442	ENSEMBL:ENSMUSG00000086669	MGI:3035071	lncRNA gene	expressed sequence AA645442
2	gene	27.401852	27.401951	positive	MGI_C57BL6J_5453826	Gm24049	ENSEMBL:ENSMUSG00000076364	MGI:5453826	miRNA gene	predicted gene, 24049
2	gene	27.442321	27.444223	positive	MGI_C57BL6J_106557	Brd3os	NCBI_Gene:100504116,ENSEMBL:ENSMUSG00000109946	MGI:106557	protein coding gene	bromodomain containing 3, opposite strand
2	gene	27.445576	27.507662	negative	MGI_C57BL6J_1914632	Brd3	NCBI_Gene:67382,ENSEMBL:ENSMUSG00000026918	MGI:1914632	protein coding gene	bromodomain containing 3
2	gene	27.450549	27.450630	negative	MGI_C57BL6J_5490891	Mir7578	miRBase:MI0024714,NCBI_Gene:102466836,ENSEMBL:ENSMUSG00000098812	MGI:5490891	miRNA gene	microRNA 7578
2	pseudogene	27.482772	27.483348	positive	MGI_C57BL6J_5010733	Gm18548	NCBI_Gene:100417345	MGI:5010733	pseudogene	predicted gene, 18548
2	gene	27.515147	27.536535	positive	MGI_C57BL6J_2155884	Wdr5	NCBI_Gene:140858,ENSEMBL:ENSMUSG00000026917	MGI:2155884	protein coding gene	WD repeat domain 5
2	gene	27.539805	27.539930	negative	MGI_C57BL6J_5455318	Gm25541	ENSEMBL:ENSMUSG00000080538	MGI:5455318	snRNA gene	predicted gene, 25541
2	gene	27.540158	27.545219	positive	MGI_C57BL6J_3649922	Gm13421	NCBI_Gene:105244102,ENSEMBL:ENSMUSG00000085929	MGI:3649922	lncRNA gene	predicted gene 13421
2	gene	27.577654	27.578897	positive	MGI_C57BL6J_5622661	Gm39776	NCBI_Gene:105244103	MGI:5622661	lncRNA gene	predicted gene, 39776
2	gene	27.676440	27.763319	positive	MGI_C57BL6J_98214	Rxra	NCBI_Gene:20181,ENSEMBL:ENSMUSG00000015846	MGI:98214	protein coding gene	retinoid X receptor alpha
2	gene	27.832686	27.838405	negative	MGI_C57BL6J_5622662	Gm39777	NCBI_Gene:105244104	MGI:5622662	lncRNA gene	predicted gene, 39777
2	gene	27.882925	27.887052	negative	MGI_C57BL6J_3590515	2810430I11Rik	ENSEMBL:ENSMUSG00000085766	MGI:3590515	lncRNA gene	RIKEN cDNA 2810430I11 gene
2	gene	27.886395	28.039514	positive	MGI_C57BL6J_88457	Col5a1	NCBI_Gene:12831,ENSEMBL:ENSMUSG00000026837	MGI:88457	protein coding gene	collagen, type V, alpha 1
2	gene	28.025417	28.030437	negative	MGI_C57BL6J_3650806	Gm13372	ENSEMBL:ENSMUSG00000086560	MGI:3650806	lncRNA gene	predicted gene 13372
2	gene	28.076378	28.084903	negative	MGI_C57BL6J_1341158	Fcnb	NCBI_Gene:14134,ENSEMBL:ENSMUSG00000026835	MGI:1341158	protein coding gene	ficolin B
2	gene	28.092032	28.093514	negative	MGI_C57BL6J_3650807	Gm13371	ENSEMBL:ENSMUSG00000085693	MGI:3650807	lncRNA gene	predicted gene 13371
2	gene	28.094131	28.132308	positive	MGI_C57BL6J_2443559	F730016J06Rik	NCBI_Gene:100504177,ENSEMBL:ENSMUSG00000086425	MGI:2443559	lncRNA gene	RIKEN cDNA F730016J06 gene
2	gene	28.192992	28.230736	positive	MGI_C57BL6J_1860437	Olfm1	NCBI_Gene:56177,ENSEMBL:ENSMUSG00000026833	MGI:1860437	protein coding gene	olfactomedin 1
2	gene	28.314940	28.404698	negative	MGI_C57BL6J_3650390	Gm13373	NCBI_Gene:102632087,ENSEMBL:ENSMUSG00000087196	MGI:3650390	lncRNA gene	predicted gene 13373
2	gene	28.446155	28.455508	positive	MGI_C57BL6J_2685193	Ppp1r26	NCBI_Gene:241289,ENSEMBL:ENSMUSG00000035829	MGI:2685193	protein coding gene	protein phosphatase 1, regulatory subunit 26
2	gene	28.462001	28.466332	negative	MGI_C57BL6J_1916577	1700007K13Rik	NCBI_Gene:69327,ENSEMBL:ENSMUSG00000026831	MGI:1916577	protein coding gene	RIKEN cDNA 1700007K13 gene
2	gene	28.465956	28.471178	positive	MGI_C57BL6J_2153089	Mrps2	NCBI_Gene:118451,ENSEMBL:ENSMUSG00000035772	MGI:2153089	protein coding gene	mitochondrial ribosomal protein S2
2	pseudogene	28.477089	28.478117	positive	MGI_C57BL6J_3650393	Rpsa-ps9	NCBI_Gene:665412,ENSEMBL:ENSMUSG00000082895	MGI:3650393	pseudogene	ribosomal protein SA, pseudogene 9
2	gene	28.479214	28.506030	positive	MGI_C57BL6J_2449143	Gbgt1	NCBI_Gene:227671,ENSEMBL:ENSMUSG00000026829	MGI:2449143	protein coding gene	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
2	gene	28.506095	28.507773	positive	MGI_C57BL6J_3642322	Gm10134	ENSEMBL:ENSMUSG00000063611	MGI:3642322	protein coding gene	predicted gene 10134
2	gene	28.513089	28.553082	positive	MGI_C57BL6J_107485	Ralgds	NCBI_Gene:19730,ENSEMBL:ENSMUSG00000026821	MGI:107485	protein coding gene	ral guanine nucleotide dissociation stimulator
2	gene	28.555795	28.563403	negative	MGI_C57BL6J_88374	Cel	NCBI_Gene:12613,ENSEMBL:ENSMUSG00000026818	MGI:88374	protein coding gene	carboxyl ester lipase
2	gene	28.562197	28.576698	positive	MGI_C57BL6J_3649650	Gm13381	ENSEMBL:ENSMUSG00000087667	MGI:3649650	lncRNA gene	predicted gene 13381
2	gene	28.566245	28.583751	negative	MGI_C57BL6J_1917489	Gtf3c5	NCBI_Gene:70239,ENSEMBL:ENSMUSG00000026816	MGI:1917489	protein coding gene	general transcription factor IIIC, polypeptide 5
2	gene	28.595127	28.595230	positive	MGI_C57BL6J_5452452	Gm22675	ENSEMBL:ENSMUSG00000089055	MGI:5452452	snRNA gene	predicted gene, 22675
2	gene	28.608195	28.608286	positive	MGI_C57BL6J_5452601	Gm22824	ENSEMBL:ENSMUSG00000078061	MGI:5452601	miRNA gene	predicted gene, 22824
2	gene	28.609450	28.621982	negative	MGI_C57BL6J_1276578	Gfi1b	NCBI_Gene:14582,ENSEMBL:ENSMUSG00000026815	MGI:1276578	protein coding gene	growth factor independent 1B
2	gene	28.641189	28.691172	positive	MGI_C57BL6J_1929183	Tsc1	NCBI_Gene:64930,ENSEMBL:ENSMUSG00000026812	MGI:1929183	protein coding gene	TSC complex subunit 1
2	gene	28.692080	28.699727	negative	MGI_C57BL6J_1917237	Spaca9	NCBI_Gene:69987,ENSEMBL:ENSMUSG00000026809	MGI:1917237	protein coding gene	sperm acrosome associated 9
2	gene	28.698222	28.813165	positive	MGI_C57BL6J_1916120	Ak8	NCBI_Gene:68870,ENSEMBL:ENSMUSG00000026807	MGI:1916120	protein coding gene	adenylate kinase 8
2	gene	28.733278	28.733351	positive	MGI_C57BL6J_4834302	Mir3088	miRBase:MI0014081,NCBI_Gene:100526498,ENSEMBL:ENSMUSG00000092832	MGI:4834302	miRNA gene	microRNA 3088
2	pseudogene	28.793350	28.793569	negative	MGI_C57BL6J_3651038	Gm13385	ENSEMBL:ENSMUSG00000082796	MGI:3651038	pseudogene	predicted gene 13385
2	pseudogene	28.807062	28.807840	negative	MGI_C57BL6J_3650788	Gm13386	NCBI_Gene:665643,ENSEMBL:ENSMUSG00000083115	MGI:3650788	pseudogene	predicted gene 13386
2	gene	28.822299	28.840360	negative	MGI_C57BL6J_2138937	Gtf3c4	NCBI_Gene:269252,ENSEMBL:ENSMUSG00000035666	MGI:2138937	protein coding gene	general transcription factor IIIC, polypeptide 4
2	gene	28.840406	28.905575	positive	MGI_C57BL6J_2682639	Ddx31	NCBI_Gene:227674,ENSEMBL:ENSMUSG00000026806	MGI:2682639	protein coding gene	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
2	gene	28.907679	28.918433	negative	MGI_C57BL6J_1859288	Barhl1	NCBI_Gene:54422,ENSEMBL:ENSMUSG00000026805	MGI:1859288	protein coding gene	BarH like homeobox 1
2	gene	28.926949	29.055274	negative	MGI_C57BL6J_2685669	Cfap77	NCBI_Gene:329375,ENSEMBL:ENSMUSG00000079502	MGI:2685669	protein coding gene	cilia and flagella associated protein 77
2	pseudogene	28.933429	28.934627	negative	MGI_C57BL6J_3651848	Gm13394	NCBI_Gene:100033452,ENSEMBL:ENSMUSG00000083773	MGI:3651848	pseudogene	predicted gene 13394
2	gene	29.060199	29.087656	positive	MGI_C57BL6J_105044	Ttf1	NCBI_Gene:22130,ENSEMBL:ENSMUSG00000026803	MGI:105044	protein coding gene	transcription termination factor, RNA polymerase I
2	gene	29.088666	29.094501	positive	MGI_C57BL6J_3649783	Gm13393	ENSEMBL:ENSMUSG00000086519	MGI:3649783	lncRNA gene	predicted gene 13393
2	pseudogene	29.093835	29.094345	negative	MGI_C57BL6J_3651850	Gm13396	NCBI_Gene:100417515,ENSEMBL:ENSMUSG00000082788	MGI:3651850	pseudogene	predicted gene 13396
2	gene	29.122587	29.182471	positive	MGI_C57BL6J_2443480	Setx	NCBI_Gene:269254,ENSEMBL:ENSMUSG00000043535	MGI:2443480	protein coding gene	senataxin
2	gene	29.194541	29.253005	negative	MGI_C57BL6J_2159341	Ntng2	NCBI_Gene:171171,ENSEMBL:ENSMUSG00000035513	MGI:2159341	protein coding gene	netrin G2
2	gene	29.245107	29.253006	negative	MGI_C57BL6J_1923470	6530402F18Rik	NCBI_Gene:76220,ENSEMBL:ENSMUSG00000079499	MGI:1923470	lncRNA gene	RIKEN cDNA 6530402F18 gene
2	gene	29.346810	29.524793	positive	MGI_C57BL6J_1916225	Med27	NCBI_Gene:68975,ENSEMBL:ENSMUSG00000026799	MGI:1916225	protein coding gene	mediator complex subunit 27
2	gene	29.349842	29.396459	negative	MGI_C57BL6J_3649787	Gm13402	ENSEMBL:ENSMUSG00000086994	MGI:3649787	lncRNA gene	predicted gene 13402
2	gene	29.459194	29.459328	positive	MGI_C57BL6J_5454753	Gm24976	ENSEMBL:ENSMUSG00000089597	MGI:5454753	rRNA gene	predicted gene, 24976
2	gene	29.475215	29.475294	negative	MGI_C57BL6J_5531247	Mir133c	miRBase:MI0021863,NCBI_Gene:102465170,ENSEMBL:ENSMUSG00000098539	MGI:5531247	miRNA gene	microRNA 133c
2	pseudogene	29.498212	29.498502	positive	MGI_C57BL6J_3649786	Gm13401	ENSEMBL:ENSMUSG00000082413	MGI:3649786	pseudogene	predicted gene 13401
2	gene	29.542637	29.546756	negative	MGI_C57BL6J_5589920	Gm30761	NCBI_Gene:102632776	MGI:5589920	lncRNA gene	predicted gene, 30761
2	gene	29.619720	29.740978	positive	MGI_C57BL6J_104580	Rapgef1	NCBI_Gene:107746,ENSEMBL:ENSMUSG00000039844	MGI:104580	protein coding gene	Rap guanine nucleotide exchange factor (GEF) 1
2	pseudogene	29.738335	29.738665	negative	MGI_C57BL6J_3708656	Gm9823	ENSEMBL:ENSMUSG00000048316	MGI:3708656	pseudogene	predicted gene 9823
2	gene	29.743169	29.751726	negative	MGI_C57BL6J_3649917	Gm13420	NCBI_Gene:433415,ENSEMBL:ENSMUSG00000079497	MGI:3649917	protein coding gene	predicted gene 13420
2	gene	29.759312	29.764089	positive	MGI_C57BL6J_3650473	Gm13547	NCBI_Gene:433416,ENSEMBL:ENSMUSG00000075425	MGI:3650473	protein coding gene	predicted gene 13547
2	gene	29.761223	29.788502	negative	MGI_C57BL6J_2442186	Trub2	NCBI_Gene:227682,ENSEMBL:ENSMUSG00000039826	MGI:2442186	protein coding gene	TruB pseudouridine (psi) synthase family member 2
2	gene	29.787493	29.797935	positive	MGI_C57BL6J_1098826	Coq4	NCBI_Gene:227683,ENSEMBL:ENSMUSG00000026798	MGI:1098826	protein coding gene	coenzyme Q4
2	gene	29.802634	29.817522	positive	MGI_C57BL6J_1347347	Slc27a4	NCBI_Gene:26569,ENSEMBL:ENSMUSG00000059316	MGI:1347347	protein coding gene	solute carrier family 27 (fatty acid transporter), member 4
2	gene	29.820075	29.845002	positive	MGI_C57BL6J_1915455	Urm1	NCBI_Gene:68205,ENSEMBL:ENSMUSG00000069020	MGI:1915455	protein coding gene	ubiquitin related modifier 1
2	gene	29.845071	29.846245	negative	MGI_C57BL6J_3781264	Gm3088	NA	NA	unclassified non-coding RNA gene	predicted gene 3088
2	gene	29.845100	29.882845	positive	MGI_C57BL6J_2139134	Cercam	NCBI_Gene:99151,ENSEMBL:ENSMUSG00000039787	MGI:2139134	protein coding gene	cerebral endothelial cell adhesion molecule
2	gene	29.845631	29.845727	negative	MGI_C57BL6J_3618754	Mir219a-2	miRBase:MI0000741,NCBI_Gene:723904,ENSEMBL:ENSMUSG00000065485	MGI:3618754	miRNA gene	microRNA 219a-2
2	gene	29.845647	29.845711	positive	MGI_C57BL6J_5562756	Mir219b	miRBase:MI0024990,NCBI_Gene:102466839,ENSEMBL:ENSMUSG00000105010	MGI:5562756	miRNA gene	microRNA 219b
2	gene	29.868723	29.870317	negative	MGI_C57BL6J_1917569	2600006K01Rik	ENSEMBL:ENSMUSG00000039798	MGI:1917569	lncRNA gene	RIKEN cDNA 2600006K01 gene
2	gene	29.889014	29.931746	positive	MGI_C57BL6J_1098824	Odf2	NCBI_Gene:18286,ENSEMBL:ENSMUSG00000026790	MGI:1098824	protein coding gene	outer dense fiber of sperm tails 2
2	gene	29.931427	29.931523	negative	MGI_C57BL6J_5453642	Gm23865	ENSEMBL:ENSMUSG00000088348	MGI:5453642	snRNA gene	predicted gene, 23865
2	gene	29.935409	29.960371	positive	MGI_C57BL6J_1921662	Gle1	NCBI_Gene:74412,ENSEMBL:ENSMUSG00000019715	MGI:1921662	protein coding gene	GLE1 RNA export mediator (yeast)
2	gene	29.962174	29.965035	positive	MGI_C57BL6J_5622664	Gm39779	NCBI_Gene:105244106	MGI:5622664	lncRNA gene	predicted gene, 39779
2	gene	29.965560	30.031451	positive	MGI_C57BL6J_98386	Sptan1	NCBI_Gene:20740,ENSEMBL:ENSMUSG00000057738	MGI:98386	protein coding gene	spectrin alpha, non-erythrocytic 1
2	gene	29.995950	29.996020	positive	MGI_C57BL6J_5530692	Mir6997	miRBase:MI0022845,NCBI_Gene:102465603,ENSEMBL:ENSMUSG00000098453	MGI:5530692	miRNA gene	microRNA 6997
2	gene	30.031546	30.048881	negative	MGI_C57BL6J_1919070	Wdr34	NCBI_Gene:71820,ENSEMBL:ENSMUSG00000039715	MGI:1919070	protein coding gene	WD repeat domain 34
2	gene	30.048962	30.049378	positive	MGI_C57BL6J_1924032	2410198J08Rik	NA	NA	unclassified gene	RIKEN cDNA 2410198J08 gene
2	gene	30.054916	30.054953	negative	MGI_C57BL6J_2180203	Tmlhe	NA	NA	protein coding gene	trimethyllysine hydroxylase%2c epsilon
2	gene	30.057378	30.072577	positive	MGI_C57BL6J_1860267	Set	NCBI_Gene:56086,ENSEMBL:ENSMUSG00000054766	MGI:1860267	protein coding gene	SET nuclear oncogene
2	gene	30.077541	30.091022	positive	MGI_C57BL6J_2388285	Pkn3	NCBI_Gene:263803,ENSEMBL:ENSMUSG00000026785	MGI:2388285	protein coding gene	protein kinase N3
2	gene	30.090944	30.093648	negative	MGI_C57BL6J_1913470	Zdhhc12	NCBI_Gene:66220,ENSEMBL:ENSMUSG00000015335	MGI:1913470	protein coding gene	zinc finger, DHHC domain containing 12
2	gene	30.097283	30.125258	negative	MGI_C57BL6J_2442511	Zer1	NCBI_Gene:227693,ENSEMBL:ENSMUSG00000039686	MGI:2442511	protein coding gene	zyg-11 related, cell cycle regulator
2	gene	30.124072	30.126329	positive	MGI_C57BL6J_3781325	Gm3146	NA	NA	unclassified gene	predicted gene 3146
2	gene	30.133746	30.152013	positive	MGI_C57BL6J_2385326	Tbc1d13	NCBI_Gene:70296,ENSEMBL:ENSMUSG00000039678	MGI:2385326	protein coding gene	TBC1 domain family, member 13
2	pseudogene	30.159283	30.161600	positive	MGI_C57BL6J_3615375	Slc39a1-ps	NCBI_Gene:194642,ENSEMBL:ENSMUSG00000085401	MGI:3615375	pseudogene	solute carrier family 39 (zinc transporter), member 1, pseudogene
2	gene	30.162606	30.170335	positive	MGI_C57BL6J_5590239	Gm31080	NCBI_Gene:102633192	MGI:5590239	lncRNA gene	predicted gene, 31080
2	gene	30.171407	30.174069	positive	MGI_C57BL6J_1261433	Endog	NCBI_Gene:13804,ENSEMBL:ENSMUSG00000015337	MGI:1261433	protein coding gene	endonuclease G
2	gene	30.173447	30.178495	negative	MGI_C57BL6J_106544	Spout1	NCBI_Gene:227695,ENSEMBL:ENSMUSG00000039660	MGI:106544	protein coding gene	SPOUT domain containing methyltransferase 1
2	gene	30.185124	30.206758	negative	MGI_C57BL6J_1917516	Kyat1	NCBI_Gene:70266,ENSEMBL:ENSMUSG00000039648	MGI:1917516	protein coding gene	kynurenine aminotransferase 1
2	gene	30.205887	30.209507	positive	MGI_C57BL6J_5590360	Gm31201	NCBI_Gene:102633356	MGI:5590360	lncRNA gene	predicted gene, 31201
2	gene	30.236795	30.238223	negative	MGI_C57BL6J_1914600	1700084E18Rik	NCBI_Gene:67350,ENSEMBL:ENSMUSG00000100747	MGI:1914600	lncRNA gene	RIKEN cDNA 1700084E18 gene
2	gene	30.237715	30.263790	positive	MGI_C57BL6J_2652847	Lrrc8a	NCBI_Gene:241296,ENSEMBL:ENSMUSG00000007476	MGI:2652847	protein coding gene	leucine rich repeat containing 8A VRAC subunit A
2	gene	30.240567	30.282148	positive	MGI_C57BL6J_5547771	Gm28035	ENSEMBL:ENSMUSG00000099041	MGI:5547771	protein coding gene	predicted gene, 28035
2	gene	30.266203	30.282149	positive	MGI_C57BL6J_3612860	Phyhd1	NCBI_Gene:227696,ENSEMBL:ENSMUSG00000079484	MGI:3612860	protein coding gene	phytanoyl-CoA dioxygenase domain containing 1
2	gene	30.281043	30.301078	positive	MGI_C57BL6J_5547774	Gm28038	ENSEMBL:ENSMUSG00000098794	MGI:5547774	protein coding gene	predicted gene, 28038
2	gene	30.284229	30.286354	negative	MGI_C57BL6J_2677836	Dolk	NCBI_Gene:227697,ENSEMBL:ENSMUSG00000075419	MGI:2677836	protein coding gene	dolichol kinase
2	gene	30.286397	30.344266	positive	MGI_C57BL6J_2446190	Nup188	NCBI_Gene:227699,ENSEMBL:ENSMUSG00000052533	MGI:2446190	protein coding gene	nucleoporin 188
2	gene	30.298866	30.299322	positive	MGI_C57BL6J_5622665	Gm39780	NCBI_Gene:105244107	MGI:5622665	lncRNA gene	predicted gene, 39780
2	gene	30.306067	30.323986	negative	MGI_C57BL6J_3650368	Gm14471	ENSEMBL:ENSMUSG00000084892	MGI:3650368	lncRNA gene	predicted gene 14471
2	gene	30.344777	30.359337	negative	MGI_C57BL6J_2385131	Sh3glb2	NCBI_Gene:227700,ENSEMBL:ENSMUSG00000026860	MGI:2385131	protein coding gene	SH3-domain GRB2-like endophilin B2
2	gene	30.364198	30.385521	positive	MGI_C57BL6J_1922035	Miga2	NCBI_Gene:108958,ENSEMBL:ENSMUSG00000026858	MGI:1922035	protein coding gene	mitoguardin 2
2	gene	30.367676	30.367771	positive	MGI_C57BL6J_6096149	Gm47292	ENSEMBL:ENSMUSG00000105537	MGI:6096149	miRNA gene	predicted gene, 47292
2	gene	30.392254	30.400529	positive	MGI_C57BL6J_1914093	Dolpp1	NCBI_Gene:57170,ENSEMBL:ENSMUSG00000026856	MGI:1914093	protein coding gene	dolichyl pyrophosphate phosphatase 1
2	gene	30.400471	30.415813	negative	MGI_C57BL6J_109501	Crat	NCBI_Gene:12908,ENSEMBL:ENSMUSG00000026853	MGI:109501	protein coding gene	carnitine acetyltransferase
2	gene	30.413716	30.415338	positive	MGI_C57BL6J_3826604	Gm16323	ENSEMBL:ENSMUSG00000087435	MGI:3826604	lncRNA gene	predicted gene 16323
2	gene	30.416039	30.447807	positive	MGI_C57BL6J_1346006	Ptpa	NCBI_Gene:110854,ENSEMBL:ENSMUSG00000039515	MGI:1346006	protein coding gene	protein phosphatase 2 protein activator
2	gene	30.471537	30.474219	negative	MGI_C57BL6J_1919750	Ier5l	NCBI_Gene:72500,ENSEMBL:ENSMUSG00000089762	MGI:1919750	protein coding gene	immediate early response 5-like
2	gene	30.475447	30.489052	positive	MGI_C57BL6J_5590450	Gm31291	NCBI_Gene:102633475	MGI:5590450	lncRNA gene	predicted gene, 31291
2	gene	30.497826	30.502128	positive	MGI_C57BL6J_5622666	Gm39781	NCBI_Gene:105244108	MGI:5622666	lncRNA gene	predicted gene, 39781
2	gene	30.534550	30.539022	positive	MGI_C57BL6J_3649724	Gm14487	NCBI_Gene:102633942,ENSEMBL:ENSMUSG00000085275	MGI:3649724	lncRNA gene	predicted gene 14487
2	gene	30.544429	30.547844	positive	MGI_C57BL6J_5590744	Gm31585	NCBI_Gene:102633860	MGI:5590744	lncRNA gene	predicted gene, 31585
2	gene	30.595040	30.608945	positive	MGI_C57BL6J_1925867	Cstad	NCBI_Gene:78617,ENSEMBL:ENSMUSG00000047363	MGI:1925867	protein coding gene	CSA-conditional, T cell activation-dependent protein
2	gene	30.629210	30.689210	positive	MGI_C57BL6J_1924766	9330198N18Rik	NCBI_Gene:77516,ENSEMBL:ENSMUSG00000086405	MGI:1924766	lncRNA gene	RIKEN cDNA 9330198N18 gene
2	gene	30.647544	30.655643	negative	MGI_C57BL6J_5591475	Gm32316	NCBI_Gene:102634821	MGI:5591475	lncRNA gene	predicted gene, 32316
2	gene	30.658164	30.678011	negative	MGI_C57BL6J_3649723	Gm14486	NCBI_Gene:665635,ENSEMBL:ENSMUSG00000087268	MGI:3649723	lncRNA gene	predicted gene 14486
2	gene	30.713147	30.721520	negative	MGI_C57BL6J_3649725	Gm14488	NCBI_Gene:100038700,ENSEMBL:ENSMUSG00000075416	MGI:3649725	lncRNA gene	predicted gene 14488
2	gene	30.721210	30.721293	positive	MGI_C57BL6J_4834303	Mir3089	miRBase:MI0014082,NCBI_Gene:100526499,ENSEMBL:ENSMUSG00000093091	MGI:4834303	miRNA gene	microRNA 3089
2	gene	30.721563	30.723783	negative	MGI_C57BL6J_5622667	Gm39782	NCBI_Gene:105244109	MGI:5622667	lncRNA gene	predicted gene, 39782
2	gene	30.771515	30.783618	positive	MGI_C57BL6J_5622668	Gm39783	NCBI_Gene:105244110	MGI:5622668	lncRNA gene	predicted gene, 39783
2	gene	30.783661	30.787232	negative	MGI_C57BL6J_5622669	Gm39784	NCBI_Gene:105244111	MGI:5622669	lncRNA gene	predicted gene, 39784
2	gene	30.794769	30.803723	negative	MGI_C57BL6J_1923631	1700001O22Rik	NCBI_Gene:73598,ENSEMBL:ENSMUSG00000044320	MGI:1923631	protein coding gene	RIKEN cDNA 1700001O22 gene
2	gene	30.803793	30.807429	positive	MGI_C57BL6J_1925448	4930527E20Rik	ENSEMBL:ENSMUSG00000085491	MGI:1925448	lncRNA gene	RIKEN cDNA 4930527E20 gene
2	gene	30.807779	30.823033	positive	MGI_C57BL6J_1913867	Ntmt1	NCBI_Gene:66617,ENSEMBL:ENSMUSG00000026857	MGI:1913867	protein coding gene	N-terminal Xaa-Pro-Lys N-methyltransferase 1
2	gene	30.823097	30.830333	negative	MGI_C57BL6J_1919573	Asb6	NCBI_Gene:72323,ENSEMBL:ENSMUSG00000039483	MGI:1919573	protein coding gene	ankyrin repeat and SOCS box-containing 6
2	gene	30.834972	30.881251	positive	MGI_C57BL6J_98218	Prrx2	NCBI_Gene:20204,ENSEMBL:ENSMUSG00000039476	MGI:98218	protein coding gene	paired related homeobox 2
2	gene	30.889471	30.929863	negative	MGI_C57BL6J_1927593	Ptges	NCBI_Gene:64292,ENSEMBL:ENSMUSG00000050737	MGI:1927593	protein coding gene	prostaglandin E synthase
2	gene	30.912085	30.930314	negative	MGI_C57BL6J_5622670	Gm39785	NCBI_Gene:105244112	MGI:5622670	lncRNA gene	predicted gene, 39785
2	pseudogene	30.923657	30.924357	negative	MGI_C57BL6J_3649558	Gm13400	NCBI_Gene:606546,ENSEMBL:ENSMUSG00000084143	MGI:3649558	pseudogene	predicted gene 13400
2	gene	30.952939	30.963458	positive	MGI_C57BL6J_1353605	Tor1b	NCBI_Gene:30934,ENSEMBL:ENSMUSG00000026848	MGI:1353605	protein coding gene	torsin family 1, member B
2	gene	30.960561	30.967933	negative	MGI_C57BL6J_1353568	Tor1a	NCBI_Gene:30931,ENSEMBL:ENSMUSG00000026849	MGI:1353568	protein coding gene	torsin family 1, member A (torsin A)
2	gene	30.970693	30.982201	negative	MGI_C57BL6J_2385132	BC005624	NCBI_Gene:227707,ENSEMBL:ENSMUSG00000026851	MGI:2385132	protein coding gene	cDNA sequence BC005624
2	gene	30.982279	31.023586	positive	MGI_C57BL6J_1921520	Usp20	NCBI_Gene:74270,ENSEMBL:ENSMUSG00000026854	MGI:1921520	protein coding gene	ubiquitin specific peptidase 20
2	gene	30.988250	30.996970	negative	MGI_C57BL6J_5622671	Gm39786	NCBI_Gene:105244113	MGI:5622671	lncRNA gene	predicted gene, 39786
2	gene	31.026206	31.142028	negative	MGI_C57BL6J_109606	Fnbp1	NCBI_Gene:14269,ENSEMBL:ENSMUSG00000075415	MGI:109606	protein coding gene	formin binding protein 1
2	gene	31.146457	31.152291	negative	MGI_C57BL6J_2445152	D330023K18Rik	NCBI_Gene:320973,ENSEMBL:ENSMUSG00000087269	MGI:2445152	lncRNA gene	RIKEN cDNA D330023K18 gene
2	gene	31.152316	31.218775	positive	MGI_C57BL6J_2139054	Gpr107	NCBI_Gene:277463,ENSEMBL:ENSMUSG00000000194	MGI:2139054	protein coding gene	G protein-coupled receptor 107
2	gene	31.189691	31.189814	positive	MGI_C57BL6J_5452293	Gm22516	ENSEMBL:ENSMUSG00000088891	MGI:5452293	snoRNA gene	predicted gene, 22516
2	gene	31.209470	31.211347	negative	MGI_C57BL6J_3649515	Gm13405	ENSEMBL:ENSMUSG00000087430	MGI:3649515	lncRNA gene	predicted gene 13405
2	gene	31.245743	31.295989	positive	MGI_C57BL6J_109166	Ncs1	NCBI_Gene:14299,ENSEMBL:ENSMUSG00000062661	MGI:109166	protein coding gene	neuronal calcium sensor 1
2	gene	31.307613	31.314488	negative	MGI_C57BL6J_5592025	Gm32866	NCBI_Gene:102635568	MGI:5592025	lncRNA gene	predicted gene, 32866
2	gene	31.314178	31.460738	positive	MGI_C57BL6J_2677838	Hmcn2	NCBI_Gene:665700,ENSEMBL:ENSMUSG00000055632	MGI:2677838	protein coding gene	hemicentin 2
2	gene	31.470207	31.520672	positive	MGI_C57BL6J_88090	Ass1	NCBI_Gene:11898,ENSEMBL:ENSMUSG00000076441	MGI:88090	protein coding gene	argininosuccinate synthetase 1
2	gene	31.527876	31.552067	negative	MGI_C57BL6J_5592111	Gm32952	NCBI_Gene:102635675	MGI:5592111	lncRNA gene	predicted gene, 32952
2	pseudogene	31.551901	31.552695	negative	MGI_C57BL6J_3652100	Gm13426	NCBI_Gene:100416172,ENSEMBL:ENSMUSG00000084226	MGI:3652100	pseudogene	predicted gene 13426
2	gene	31.572651	31.617526	positive	MGI_C57BL6J_2443699	Fubp3	NCBI_Gene:320267,ENSEMBL:ENSMUSG00000026843	MGI:2443699	protein coding gene	far upstream element (FUSE) binding protein 3
2	gene	31.612421	31.612484	positive	MGI_C57BL6J_5531406	Mir6998	miRBase:MI0022846,NCBI_Gene:102466214,ENSEMBL:ENSMUSG00000098904	MGI:5531406	miRNA gene	microRNA 6998
2	gene	31.633453	31.640589	negative	MGI_C57BL6J_3649915	Gm13425	ENSEMBL:ENSMUSG00000085224	MGI:3649915	lncRNA gene	predicted gene 13425
2	gene	31.634216	31.655795	positive	MGI_C57BL6J_2685844	Prdm12	NCBI_Gene:381359,ENSEMBL:ENSMUSG00000079466	MGI:2685844	protein coding gene	PR domain containing 12
2	pseudogene	31.660470	31.661427	positive	MGI_C57BL6J_3649648	Gm13424	ENSEMBL:ENSMUSG00000083143	MGI:3649648	pseudogene	predicted gene 13424
2	gene	31.670715	31.681349	positive	MGI_C57BL6J_2385133	Exosc2	NCBI_Gene:227715,ENSEMBL:ENSMUSG00000039356	MGI:2385133	protein coding gene	exosome component 2
2	gene	31.676364	31.688469	negative	MGI_C57BL6J_3650808	Gm13427	NCBI_Gene:108168742,ENSEMBL:ENSMUSG00000087549	MGI:3650808	lncRNA gene	predicted gene 13427
2	gene	31.688354	31.807093	positive	MGI_C57BL6J_87859	Abl1	NCBI_Gene:11350,ENSEMBL:ENSMUSG00000026842	MGI:87859	protein coding gene	c-abl oncogene 1, non-receptor tyrosine kinase
2	gene	31.806166	31.810580	negative	MGI_C57BL6J_3630329	Qrfp	NCBI_Gene:227717,ENSEMBL:ENSMUSG00000043102	MGI:3630329	protein coding gene	pyroglutamylated RFamide peptide
2	gene	31.813290	31.846647	negative	MGI_C57BL6J_2138953	Fibcd1	NCBI_Gene:98970,ENSEMBL:ENSMUSG00000026841	MGI:2138953	protein coding gene	fibrinogen C domain containing 1
2	gene	31.886934	31.892417	negative	MGI_C57BL6J_3649406	Gm13441	ENSEMBL:ENSMUSG00000086356	MGI:3649406	lncRNA gene	predicted gene 13441
2	gene	31.887281	31.946539	positive	MGI_C57BL6J_1344394	Lamc3	NCBI_Gene:23928,ENSEMBL:ENSMUSG00000026840	MGI:1344394	protein coding gene	laminin gamma 3
2	gene	31.948454	31.949083	positive	MGI_C57BL6J_1916143	1110064A23Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 1110064A23 gene
2	gene	31.950139	31.973442	positive	MGI_C57BL6J_1919598	Aif1l	NCBI_Gene:108897,ENSEMBL:ENSMUSG00000001864	MGI:1919598	protein coding gene	allograft inflammatory factor 1-like
2	gene	31.961690	31.962547	negative	MGI_C57BL6J_3650661	Gm13442	ENSEMBL:ENSMUSG00000085737	MGI:3650661	lncRNA gene	predicted gene 13442
2	gene	31.974418	32.053975	positive	MGI_C57BL6J_1095411	Nup214	NCBI_Gene:227720,ENSEMBL:ENSMUSG00000001855	MGI:1095411	protein coding gene	nucleoporin 214
2	pseudogene	31.985059	31.986464	positive	MGI_C57BL6J_3651499	Gm13608	NCBI_Gene:100417346,ENSEMBL:ENSMUSG00000081480	MGI:3651499	pseudogene	predicted gene 13608
2	gene	32.016644	32.017887	negative	MGI_C57BL6J_3651299	Gm13609	NCBI_Gene:102636087,ENSEMBL:ENSMUSG00000086192	MGI:3651299	lncRNA gene	predicted gene 13609
2	gene	32.050055	32.087436	negative	MGI_C57BL6J_2443569	Fam78a	NCBI_Gene:241303,ENSEMBL:ENSMUSG00000050592	MGI:2443569	protein coding gene	family with sequence similarity 78, member A
2	gene	32.050086	32.064911	negative	MGI_C57BL6J_4413442	Gm16534	ENSEMBL:ENSMUSG00000090157	MGI:4413442	lncRNA gene	predicted gene 16534
2	gene	32.050946	32.051008	positive	MGI_C57BL6J_5530945	Mir7674	miRBase:MI0025015,NCBI_Gene:102466844,ENSEMBL:ENSMUSG00000099075	MGI:5530945	miRNA gene	microRNA 7674
2	gene	32.082362	32.082638	positive	MGI_C57BL6J_1922887	1700020L05Rik	NA	NA	unclassified gene	RIKEN cDNA 1700020L05 gene
2	gene	32.085296	32.087409	positive	MGI_C57BL6J_5592285	Gm33126	NCBI_Gene:102635909	MGI:5592285	lncRNA gene	predicted gene, 33126
2	gene	32.095516	32.110820	positive	MGI_C57BL6J_2445183	Plpp7	NCBI_Gene:227721,ENSEMBL:ENSMUSG00000051373	MGI:2445183	protein coding gene	phospholipid phosphatase 7 (inactive)
2	gene	32.151082	32.234537	positive	MGI_C57BL6J_1923304	Prrc2b	NCBI_Gene:227723,ENSEMBL:ENSMUSG00000039262	MGI:1923304	protein coding gene	proline-rich coiled-coil 2B
2	gene	32.173171	32.173249	positive	MGI_C57BL6J_5531187	Gm27805	ENSEMBL:ENSMUSG00000099155	MGI:5531187	miRNA gene	predicted gene, 27805
2	gene	32.221970	32.222054	positive	MGI_C57BL6J_5451969	Gm22192	ENSEMBL:ENSMUSG00000094382	MGI:5451969	snoRNA gene	predicted gene, 22192
2	gene	32.225653	32.225737	positive	MGI_C57BL6J_5455409	Gm25632	ENSEMBL:ENSMUSG00000094251	MGI:5455409	snoRNA gene	predicted gene, 25632
2	gene	32.227328	32.228524	positive	MGI_C57BL6J_2442006	E030004H24Rik	NA	NA	unclassified gene	RIKEN cDNA E030004H24 gene
2	gene	32.232782	32.236382	negative	MGI_C57BL6J_3651297	Gm13610	ENSEMBL:ENSMUSG00000086216	MGI:3651297	lncRNA gene	predicted gene 13610
2	gene	32.236590	32.255005	positive	MGI_C57BL6J_2138994	Pomt1	NCBI_Gene:99011,ENSEMBL:ENSMUSG00000039254	MGI:2138994	protein coding gene	protein-O-mannosyltransferase 1
2	gene	32.255002	32.260246	negative	MGI_C57BL6J_98904	Uck1	NCBI_Gene:22245,ENSEMBL:ENSMUSG00000002550	MGI:98904	protein coding gene	uridine-cytidine kinase 1
2	pseudogene	32.271810	32.272204	positive	MGI_C57BL6J_3651300	Gm13611	NCBI_Gene:100504319,ENSEMBL:ENSMUSG00000066068	MGI:3651300	pseudogene	predicted gene 13611
2	gene	32.278805	32.288128	negative	MGI_C57BL6J_1920181	Swi5	NCBI_Gene:72931,ENSEMBL:ENSMUSG00000044627	MGI:1920181	protein coding gene	SWI5 recombination repair homolog (yeast)
2	gene	32.287384	32.307921	positive	MGI_C57BL6J_2139395	Golga2	NCBI_Gene:99412,ENSEMBL:ENSMUSG00000002546	MGI:2139395	protein coding gene	golgi autoantigen, golgin subfamily a, 2
2	gene	32.308471	32.353339	negative	MGI_C57BL6J_107384	Dnm1	NCBI_Gene:13429,ENSEMBL:ENSMUSG00000026825	MGI:107384	protein coding gene	dynamin 1
2	gene	32.318265	32.318343	positive	MGI_C57BL6J_5453140	Gm23363	NCBI_Gene:104795665,ENSEMBL:ENSMUSG00000092765	MGI:5453140	miRNA gene	predicted gene, 23363
2	gene	32.318460	32.318569	positive	MGI_C57BL6J_2676865	Mir199b	miRBase:MI0000714,NCBI_Gene:387239,ENSEMBL:ENSMUSG00000092807	MGI:2676865	miRNA gene	microRNA 199b
2	gene	32.352327	32.380970	positive	MGI_C57BL6J_1920234	Ciz1	NCBI_Gene:68379,ENSEMBL:ENSMUSG00000039205	MGI:1920234	protein coding gene	CDKN1A interacting zinc finger protein 1
2	gene	32.355759	32.357691	positive	MGI_C57BL6J_5622672	Gm39787	NCBI_Gene:105244115	MGI:5622672	lncRNA gene	predicted gene, 39787
2	gene	32.377097	32.381938	negative	MGI_C57BL6J_1920987	1110008P14Rik	NCBI_Gene:73737,ENSEMBL:ENSMUSG00000039195	MGI:1920987	protein coding gene	RIKEN cDNA 1110008P14 gene
2	gene	32.384633	32.388252	negative	MGI_C57BL6J_96757	Lcn2	NCBI_Gene:16819,ENSEMBL:ENSMUSG00000026822	MGI:96757	protein coding gene	lipocalin 2
2	gene	32.395890	32.405772	positive	MGI_C57BL6J_1917592	Ptges2	NCBI_Gene:96979,ENSEMBL:ENSMUSG00000026820	MGI:1917592	protein coding gene	prostaglandin E synthase 2
2	pseudogene	32.406040	32.406712	positive	MGI_C57BL6J_3650613	Gm13413	NCBI_Gene:100504342,ENSEMBL:ENSMUSG00000083004	MGI:3650613	pseudogene	predicted gene 13413
2	gene	32.414487	32.451470	negative	MGI_C57BL6J_1915913	Slc25a25	NCBI_Gene:227731,ENSEMBL:ENSMUSG00000026819	MGI:1915913	protein coding gene	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
2	gene	32.450457	32.456953	positive	MGI_C57BL6J_1918504	Naif1	NCBI_Gene:71254,ENSEMBL:ENSMUSG00000039164	MGI:1918504	protein coding gene	nuclear apoptosis inducing factor 1
2	gene	32.487988	32.492148	positive	MGI_C57BL6J_5610397	Gm37169	ENSEMBL:ENSMUSG00000103175	MGI:5610397	unclassified gene	predicted gene, 37169
2	gene	32.525031	32.527990	positive	MGI_C57BL6J_3650612	Gm13412	ENSEMBL:ENSMUSG00000085017	MGI:3650612	lncRNA gene	predicted gene 13412
2	gene	32.535332	32.569756	positive	MGI_C57BL6J_2138935	Fam102a	NCBI_Gene:98952,ENSEMBL:ENSMUSG00000039157	MGI:2138935	protein coding gene	family with sequence similarity 102, member A
2	gene	32.570858	32.573579	positive	MGI_C57BL6J_1330238	Dpm2	NCBI_Gene:13481,ENSEMBL:ENSMUSG00000026810	MGI:1330238	protein coding gene	dolichol-phosphate (beta-D) mannosyltransferase 2
2	gene	32.574183	32.575684	negative	MGI_C57BL6J_2441749	9430097D07Rik	NCBI_Gene:319245,ENSEMBL:ENSMUSG00000075405	MGI:2441749	protein coding gene	RIKEN cDNA 9430097D07 gene
2	gene	32.574797	32.583782	positive	MGI_C57BL6J_2448520	Pip5kl1	NCBI_Gene:227733,ENSEMBL:ENSMUSG00000046854	MGI:2448520	protein coding gene	phosphatidylinositol-4-phosphate 5-kinase-like 1
2	gene	32.587078	32.599698	positive	MGI_C57BL6J_1341894	St6galnac4	NCBI_Gene:20448,ENSEMBL:ENSMUSG00000079442	MGI:1341894	protein coding gene	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
2	gene	32.593469	32.593573	negative	MGI_C57BL6J_5453146	Gm23369	ENSEMBL:ENSMUSG00000093147	MGI:5453146	snRNA gene	predicted gene, 23369
2	gene	32.599709	32.620809	positive	MGI_C57BL6J_1355316	St6galnac6	NCBI_Gene:50935,ENSEMBL:ENSMUSG00000026811	MGI:1355316	protein coding gene	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
2	gene	32.621758	32.635058	positive	MGI_C57BL6J_87977	Ak1	NCBI_Gene:11636,ENSEMBL:ENSMUSG00000026817	MGI:87977	protein coding gene	adenylate kinase 1
2	gene	32.646595	32.682669	positive	MGI_C57BL6J_95392	Eng	NCBI_Gene:13805,ENSEMBL:ENSMUSG00000026814	MGI:95392	protein coding gene	endoglin
2	gene	32.652329	32.652414	positive	MGI_C57BL6J_3837035	Mir1954	miRBase:MI0009949,NCBI_Gene:100316776,ENSEMBL:ENSMUSG00000093336	MGI:3837035	miRNA gene	microRNA 1954
2	gene	32.675108	32.675172	positive	MGI_C57BL6J_6096147	Gm47291	ENSEMBL:ENSMUSG00000105312	MGI:6096147	miRNA gene	predicted gene, 47291
2	gene	32.675109	32.675245	positive	MGI_C57BL6J_5456013	Gm26236	ENSEMBL:ENSMUSG00000093277	MGI:5456013	snoRNA gene	predicted gene, 26236
2	gene	32.682609	32.704196	negative	MGI_C57BL6J_95576	Fpgs	NCBI_Gene:14287,ENSEMBL:ENSMUSG00000009566	MGI:95576	protein coding gene	folylpolyglutamyl synthetase
2	gene	32.687630	32.687766	negative	MGI_C57BL6J_5530930	Mir8093	miRBase:MI0026020,NCBI_Gene:102465885,ENSEMBL:ENSMUSG00000098972	MGI:5530930	miRNA gene	microRNA 8093
2	gene	32.705782	32.713076	negative	MGI_C57BL6J_1328368	Cdk9	NCBI_Gene:107951,ENSEMBL:ENSMUSG00000009555	MGI:1328368	protein coding gene	cyclin-dependent kinase 9 (CDC2-related kinase)
2	gene	32.712807	32.712888	negative	MGI_C57BL6J_4441431	Mir2861	miRBase:MI0013007,NCBI_Gene:100499514,ENSEMBL:ENSMUSG00000093280	MGI:4441431	miRNA gene	microRNA 2861
2	gene	32.712900	32.712972	negative	MGI_C57BL6J_4950394	Mir3960	miRBase:MI0016963,NCBI_Gene:100628606,ENSEMBL:ENSMUSG00000105841	MGI:4950394	miRNA gene	microRNA 3960
2	gene	32.713550	32.720787	positive	MGI_C57BL6J_5592616	Gm33457	NCBI_Gene:102636372	MGI:5592616	lncRNA gene	predicted gene, 33457
2	gene	32.721055	32.755512	positive	MGI_C57BL6J_1351631	Sh2d3c	NCBI_Gene:27387,ENSEMBL:ENSMUSG00000059013	MGI:1351631	protein coding gene	SH2 domain containing 3C
2	gene	32.732620	32.741016	negative	MGI_C57BL6J_1917980	6330409D20Rik	NCBI_Gene:70730,ENSEMBL:ENSMUSG00000009551	MGI:1917980	protein coding gene	RIKEN cDNA 6330409D20 gene
2	gene	32.757026	32.775661	negative	MGI_C57BL6J_2443048	Ttc16	NCBI_Gene:338348,ENSEMBL:ENSMUSG00000039021	MGI:2443048	protein coding gene	tetratricopeptide repeat domain 16
2	gene	32.757234	32.762250	positive	MGI_C57BL6J_1353596	Tor2a	NCBI_Gene:30933,ENSEMBL:ENSMUSG00000009563	MGI:1353596	protein coding gene	torsin family 2, member A
2	gene	32.775739	32.777597	positive	MGI_C57BL6J_1913779	Ptrh1	NCBI_Gene:329384,ENSEMBL:ENSMUSG00000053746	MGI:1913779	protein coding gene	peptidyl-tRNA hydrolase 1 homolog
2	gene	32.777381	32.784428	negative	MGI_C57BL6J_2447809	Cfap157	NCBI_Gene:227736,ENSEMBL:ENSMUSG00000038987	MGI:2447809	protein coding gene	cilia and flagella associated protein 157
2	gene	32.787602	32.847245	negative	MGI_C57BL6J_107363	Stxbp1	NCBI_Gene:20910,ENSEMBL:ENSMUSG00000026797	MGI:107363	protein coding gene	syntaxin binding protein 1
2	gene	32.831989	32.832116	positive	MGI_C57BL6J_5453942	Gm24165	ENSEMBL:ENSMUSG00000064652	MGI:5453942	snoRNA gene	predicted gene, 24165
2	gene	32.846186	32.850448	positive	MGI_C57BL6J_3651427	Gm13524	NCBI_Gene:105244117,ENSEMBL:ENSMUSG00000085397	MGI:3651427	lncRNA gene	predicted gene 13524
2	gene	32.873755	32.876001	negative	MGI_C57BL6J_3651426	Gm13523	ENSEMBL:ENSMUSG00000087496	MGI:3651426	lncRNA gene	predicted gene 13523
2	gene	32.876114	32.925254	positive	MGI_C57BL6J_2442910	Fam129b	NCBI_Gene:227737,ENSEMBL:ENSMUSG00000026796	MGI:2442910	protein coding gene	family with sequence similarity 129, member B
2	gene	32.885618	32.887858	positive	MGI_C57BL6J_2443424	D130056L21Rik	NA	NA	unclassified gene	RIKEN cDNA D130056L21 gene
2	gene	32.925215	32.961654	negative	MGI_C57BL6J_2684789	Lrsam1	NCBI_Gene:227738,ENSEMBL:ENSMUSG00000026792	MGI:2684789	protein coding gene	leucine rich repeat and sterile alpha motif containing 1
2	gene	32.961559	32.965345	positive	MGI_C57BL6J_98002	Rpl12	NCBI_Gene:269261,ENSEMBL:ENSMUSG00000038900	MGI:98002	protein coding gene	ribosomal protein L12
2	gene	32.963291	32.963420	positive	MGI_C57BL6J_2148176	Snora65	NCBI_Gene:104367,ENSEMBL:ENSMUSG00000065124	MGI:2148176	snoRNA gene	small nucleolar RNA, H/ACA box 65
2	gene	32.972981	32.982171	negative	MGI_C57BL6J_1860103	Slc2a8	NCBI_Gene:56017,ENSEMBL:ENSMUSG00000026791	MGI:1860103	protein coding gene	solute carrier family 2, (facilitated glucose transporter), member 8
2	gene	32.986224	33.131770	negative	MGI_C57BL6J_2139309	Garnl3	NCBI_Gene:99326,ENSEMBL:ENSMUSG00000038860	MGI:2139309	protein coding gene	GTPase activating RANGAP domain-like 3
2	gene	32.998527	33.002315	negative	MGI_C57BL6J_5611527	Gm38299	ENSEMBL:ENSMUSG00000104277	MGI:5611527	unclassified gene	predicted gene, 38299
2	gene	33.131709	33.132961	positive	MGI_C57BL6J_5592695	Gm33536	NCBI_Gene:102636481	MGI:5592695	lncRNA gene	predicted gene, 33536
2	gene	33.133417	33.371512	negative	MGI_C57BL6J_1922008	Ralgps1	NCBI_Gene:241308,ENSEMBL:ENSMUSG00000038831	MGI:1922008	protein coding gene	Ral GEF with PH domain and SH3 binding motif 1
2	gene	33.176441	33.185010	positive	MGI_C57BL6J_3651630	Gm13528	NCBI_Gene:105244118,ENSEMBL:ENSMUSG00000085087	MGI:3651630	lncRNA gene	predicted gene 13528
2	gene	33.211805	33.211941	negative	MGI_C57BL6J_5453323	Gm23546	ENSEMBL:ENSMUSG00000088836	MGI:5453323	snoRNA gene	predicted gene, 23546
2	gene	33.215951	33.247725	positive	MGI_C57BL6J_1347002	Angptl2	NCBI_Gene:26360,ENSEMBL:ENSMUSG00000004105	MGI:1347002	protein coding gene	angiopoietin-like 2
2	pseudogene	33.323171	33.323437	positive	MGI_C57BL6J_3651462	Gm13537	ENSEMBL:ENSMUSG00000082844	MGI:3651462	pseudogene	predicted gene 13537
2	gene	33.362994	33.363046	negative	MGI_C57BL6J_5455775	Gm25998	ENSEMBL:ENSMUSG00000093138	MGI:5455775	miRNA gene	predicted gene, 25998
2	gene	33.406108	33.431324	negative	MGI_C57BL6J_2685195	Zbtb34	NCBI_Gene:241311,ENSEMBL:ENSMUSG00000068966	MGI:2685195	protein coding gene	zinc finger and BTB domain containing 34
2	gene	33.446802	33.449207	positive	MGI_C57BL6J_3651924	Gm13536	ENSEMBL:ENSMUSG00000085742	MGI:3651924	lncRNA gene	predicted gene 13536
2	gene	33.450287	33.468655	negative	MGI_C57BL6J_1919084	Zbtb43	NCBI_Gene:71834,ENSEMBL:ENSMUSG00000026788	MGI:1919084	protein coding gene	zinc finger and BTB domain containing 43
2	gene	33.489757	33.507605	positive	MGI_C57BL6J_3651890	Gm13530	NCBI_Gene:102636561,ENSEMBL:ENSMUSG00000086939	MGI:3651890	lncRNA gene	predicted gene 13530
2	gene	33.512290	33.544499	negative	MGI_C57BL6J_5592801	Gm33642	NCBI_Gene:102636632	MGI:5592801	lncRNA gene	predicted gene, 33642
2	gene	33.552283	33.555511	negative	MGI_C57BL6J_5622674	Gm39789	NCBI_Gene:105244120	MGI:5622674	lncRNA gene	predicted gene, 39789
2	gene	33.560965	33.640973	negative	MGI_C57BL6J_1100513	Lmx1b	NCBI_Gene:16917,ENSEMBL:ENSMUSG00000038765	MGI:1100513	protein coding gene	LIM homeobox transcription factor 1 beta
2	gene	33.614398	33.614676	positive	MGI_C57BL6J_5611239	Gm38011	ENSEMBL:ENSMUSG00000104403	MGI:5611239	unclassified gene	predicted gene, 38011
2	gene	33.639682	33.640471	positive	MGI_C57BL6J_5622675	Gm39790	NCBI_Gene:105244121	MGI:5622675	lncRNA gene	predicted gene, 39790
2	gene	33.641193	33.646354	positive	MGI_C57BL6J_3639863	C130021I20Rik	NCBI_Gene:100504399,ENSEMBL:ENSMUSG00000052951	MGI:3639863	lncRNA gene	Riken cDNA C130021I20 gene
2	pseudogene	33.652389	33.652798	negative	MGI_C57BL6J_3649710	Gm13529	ENSEMBL:ENSMUSG00000081244	MGI:3649710	pseudogene	predicted gene 13529
2	gene	33.714606	33.718959	negative	MGI_C57BL6J_1924507	9430024E24Rik	NCBI_Gene:77257,ENSEMBL:ENSMUSG00000085463	MGI:1924507	lncRNA gene	RIKEN cDNA 9430024E24 gene
2	gene	33.729953	33.887946	negative	MGI_C57BL6J_1919793	Mvb12b	NCBI_Gene:72543,ENSEMBL:ENSMUSG00000038740	MGI:1919793	protein coding gene	multivesicular body subunit 12B
2	gene	33.794214	33.798487	positive	MGI_C57BL6J_5593015	Gm33856	NCBI_Gene:102636915	MGI:5593015	lncRNA gene	predicted gene, 33856
2	gene	33.805816	33.813591	positive	MGI_C57BL6J_2444126	Nron	NCBI_Gene:320482,ENSEMBL:ENSMUSG00000086484,ENSEMBL:ENSMUSG00000089596	MGI:2444126	lncRNA gene	non-protein coding RNA, repressor of NFAT
2	gene	33.898117	33.908399	negative	MGI_C57BL6J_5622677	Gm39792	NCBI_Gene:105244123	MGI:5622677	lncRNA gene	predicted gene, 39792
2	gene	33.928640	33.962519	negative	MGI_C57BL6J_5622678	Gm39793	NCBI_Gene:105244125	MGI:5622678	lncRNA gene	predicted gene, 39793
2	gene	33.935788	33.942145	negative	MGI_C57BL6J_3649380	Gm13403	ENSEMBL:ENSMUSG00000085987	MGI:3649380	lncRNA gene	predicted gene 13403
2	gene	33.942050	34.018155	positive	MGI_C57BL6J_3649379	Gm13404	NCBI_Gene:105244124,ENSEMBL:ENSMUSG00000086904	MGI:3649379	lncRNA gene	predicted gene 13404
2	gene	34.018289	34.107735	negative	MGI_C57BL6J_3045377	C230014O12Rik	NCBI_Gene:329387,ENSEMBL:ENSMUSG00000087461	MGI:3045377	lncRNA gene	RIKEN cDNA C230014O12 gene
2	gene	34.097397	34.111444	negative	MGI_C57BL6J_5613626	Gm38389	ENSEMBL:ENSMUSG00000103413	MGI:5613626	lncRNA gene	predicted gene, 38389
2	gene	34.171457	34.373142	negative	MGI_C57BL6J_97496	Pbx3	NCBI_Gene:18516,ENSEMBL:ENSMUSG00000038718	MGI:97496	protein coding gene	pre B cell leukemia homeobox 3
2	gene	34.287771	34.304440	positive	MGI_C57BL6J_2139494	C79798	ENSEMBL:ENSMUSG00000084908	MGI:2139494	lncRNA gene	expressed sequence C79798
2	gene	34.337582	34.341956	negative	MGI_C57BL6J_2444379	B930068K11Rik	NA	NA	unclassified gene	RIKEN cDNA B930068K11 gene
2	gene	34.406771	34.624958	positive	MGI_C57BL6J_2444554	Mapkap1	NCBI_Gene:227743,ENSEMBL:ENSMUSG00000038696	MGI:2444554	protein coding gene	mitogen-activated protein kinase associated protein 1
2	pseudogene	34.412988	34.413347	negative	MGI_C57BL6J_3650229	Gm13407	ENSEMBL:ENSMUSG00000083503	MGI:3650229	pseudogene	predicted gene 13407
2	gene	34.415741	34.417275	positive	MGI_C57BL6J_1923284	5830434F19Rik	NA	NA	unclassified gene	RIKEN cDNA 5830434F19 gene
2	pseudogene	34.436025	34.436582	negative	MGI_C57BL6J_3649758	Gm13406	NCBI_Gene:100416173,ENSEMBL:ENSMUSG00000083233	MGI:3649758	pseudogene	predicted gene 13406
2	gene	34.502626	34.503442	positive	MGI_C57BL6J_1921119	4930414H07Rik	NA	NA	unclassified gene	RIKEN cDNA 4930414H07 gene
2	gene	34.551556	34.580470	negative	MGI_C57BL6J_5593337	Gm34178	NCBI_Gene:102637343	MGI:5593337	lncRNA gene	predicted gene, 34178
2	pseudogene	34.564973	34.565842	positive	MGI_C57BL6J_3649613	Gm13408	NCBI_Gene:623448,ENSEMBL:ENSMUSG00000081992	MGI:3649613	pseudogene	predicted gene 13408
2	gene	34.608439	34.609367	positive	MGI_C57BL6J_1922742	1700007J24Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 1700007J24 gene
2	gene	34.639008	34.651471	positive	MGI_C57BL6J_5593531	Gm34372	NCBI_Gene:102637607	MGI:5593531	lncRNA gene	predicted gene, 34372
2	pseudogene	34.648856	34.650362	negative	MGI_C57BL6J_3652154	Gm13414	NCBI_Gene:623269,ENSEMBL:ENSMUSG00000087635	MGI:3652154	pseudogene	predicted gene 13414
2	gene	34.674594	34.755265	negative	MGI_C57BL6J_1913941	Gapvd1	NCBI_Gene:66691,ENSEMBL:ENSMUSG00000026867	MGI:1913941	protein coding gene	GTPase activating protein and VPS9 domains 1
2	gene	34.771970	34.777547	positive	MGI_C57BL6J_95835	Hspa5	NCBI_Gene:14828,ENSEMBL:ENSMUSG00000026864	MGI:95835	protein coding gene	heat shock protein 5
2	gene	34.774782	34.800164	negative	MGI_C57BL6J_2139530	Rabepk	NCBI_Gene:227746,ENSEMBL:ENSMUSG00000070953	MGI:2139530	protein coding gene	Rab9 effector protein with kelch motifs
2	gene	34.801653	34.802801	negative	MGI_C57BL6J_1924259	2700071L08Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 2700071L08 gene
2	gene	34.802318	34.811906	positive	MGI_C57BL6J_1925290	4930550L05Rik	NA	NA	unclassified gene	RIKEN cDNA 4930550L05 gene
2	gene	34.804364	34.826311	negative	MGI_C57BL6J_1353435	Fbxw2	NCBI_Gene:30050,ENSEMBL:ENSMUSG00000035949	MGI:1353435	protein coding gene	F-box and WD-40 domain protein 2
2	gene	34.826316	34.839728	positive	MGI_C57BL6J_5593812	Gm34653	NCBI_Gene:102637973,ENSEMBL:ENSMUSG00000107167	MGI:5593812	protein coding gene	predicted gene, 34653
2	pseudogene	34.830840	34.831110	positive	MGI_C57BL6J_3651671	Gm13419	ENSEMBL:ENSMUSG00000081904	MGI:3651671	pseudogene	predicted gene 13419
2	gene	34.849734	34.874968	negative	MGI_C57BL6J_1914248	Psmd5	NCBI_Gene:66998,ENSEMBL:ENSMUSG00000026869	MGI:1914248	protein coding gene	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
2	gene	34.870396	34.872450	positive	MGI_C57BL6J_1917730	5730407M17Rik	NA	NA	unclassified gene	RIKEN cDNA 5730407M17 gene
2	gene	34.874396	34.892133	positive	MGI_C57BL6J_1925246	Cutal	NCBI_Gene:77996,ENSEMBL:ENSMUSG00000026870	MGI:1925246	protein coding gene	cutA divalent cation tolerance homolog-like
2	gene	34.893752	34.914077	negative	MGI_C57BL6J_1921266	Phf19	NCBI_Gene:74016,ENSEMBL:ENSMUSG00000026873	MGI:1921266	protein coding gene	PHD finger protein 19
2	gene	34.912871	34.916014	positive	MGI_C57BL6J_3651456	Gm13448	ENSEMBL:ENSMUSG00000086001	MGI:3651456	lncRNA gene	predicted gene 13448
2	gene	34.916250	34.916353	positive	MGI_C57BL6J_5454682	Gm24905	ENSEMBL:ENSMUSG00000088754	MGI:5454682	snRNA gene	predicted gene, 24905
2	gene	34.941750	34.962548	negative	MGI_C57BL6J_101836	Traf1	NCBI_Gene:22029,ENSEMBL:ENSMUSG00000026875	MGI:101836	protein coding gene	TNF receptor-associated factor 1
2	gene	34.962703	34.963305	positive	MGI_C57BL6J_5826370	Gm46733	NCBI_Gene:108168743	MGI:5826370	lncRNA gene	predicted gene, 46733
2	pseudogene	34.964580	34.964919	negative	MGI_C57BL6J_3650133	Gm13450	NCBI_Gene:100504479,ENSEMBL:ENSMUSG00000083533	MGI:3650133	pseudogene	predicted gene 13450
2	gene	34.983329	35.067034	negative	MGI_C57BL6J_96031	Hc	NCBI_Gene:15139,ENSEMBL:ENSMUSG00000026874	MGI:96031	protein coding gene	hemolytic complement
2	gene	34.993973	35.013446	positive	MGI_C57BL6J_3651453	Gm13449	ENSEMBL:ENSMUSG00000085599	MGI:3651453	lncRNA gene	predicted gene 13449
2	gene	35.063521	35.068478	positive	MGI_C57BL6J_5622679	Gm39794	NCBI_Gene:105244126	MGI:5622679	lncRNA gene	predicted gene, 39794
2	gene	35.081861	35.101543	negative	MGI_C57BL6J_2138853	AI182371	NCBI_Gene:98870,ENSEMBL:ENSMUSG00000035875	MGI:2138853	protein coding gene	expressed sequence AI182371
2	gene	35.100778	35.104380	positive	MGI_C57BL6J_5826371	Gm46734	NCBI_Gene:108168744	MGI:5826371	lncRNA gene	predicted gene, 46734
2	gene	35.109492	35.178822	positive	MGI_C57BL6J_1889576	Cntrl	NCBI_Gene:26920,ENSEMBL:ENSMUSG00000057110	MGI:1889576	protein coding gene	centriolin
2	gene	35.180205	35.201120	negative	MGI_C57BL6J_1915615	Rab14	NCBI_Gene:68365,ENSEMBL:ENSMUSG00000026878	MGI:1915615	protein coding gene	RAB14, member RAS oncogene family
2	gene	35.223695	35.254166	positive	MGI_C57BL6J_3652204	Gm13605	NCBI_Gene:100504493,ENSEMBL:ENSMUSG00000084768	MGI:3652204	lncRNA gene	predicted gene 13605
2	gene	35.256359	35.307902	positive	MGI_C57BL6J_95851	Gsn	NCBI_Gene:227753,ENSEMBL:ENSMUSG00000026879	MGI:95851	protein coding gene	gelsolin
2	gene	35.262665	35.266812	negative	MGI_C57BL6J_5622681	Gm39796	NCBI_Gene:105244128	MGI:5622681	lncRNA gene	predicted gene, 39796
2	gene	35.267662	35.280451	negative	MGI_C57BL6J_5622680	Gm39795	NCBI_Gene:105244127	MGI:5622680	lncRNA gene	predicted gene, 39795
2	gene	35.280390	35.282010	positive	MGI_C57BL6J_5663265	Gm43128	ENSEMBL:ENSMUSG00000106961	MGI:5663265	unclassified gene	predicted gene 43128
2	gene	35.313986	35.337009	negative	MGI_C57BL6J_95403	Stom	NCBI_Gene:13830,ENSEMBL:ENSMUSG00000026880	MGI:95403	protein coding gene	stomatin
2	pseudogene	35.340338	35.340987	positive	MGI_C57BL6J_3649615	Gm13443	NCBI_Gene:654354,ENSEMBL:ENSMUSG00000075391	MGI:3649615	pseudogene	predicted gene 13443
2	gene	35.354218	35.367729	negative	MGI_C57BL6J_1923109	4930568D16Rik	NCBI_Gene:75859,ENSEMBL:ENSMUSG00000026882	MGI:1923109	protein coding gene	RIKEN cDNA 4930568D16 gene
2	gene	35.375562	35.397175	negative	MGI_C57BL6J_1922104	4930402F06Rik	NCBI_Gene:74854,ENSEMBL:ENSMUSG00000079421	MGI:1922104	protein coding gene	RIKEN cDNA 4930402F06 gene
2	gene	35.376280	35.387709	positive	MGI_C57BL6J_5622682	Gm39797	NCBI_Gene:105244129	MGI:5622682	lncRNA gene	predicted gene, 39797
2	gene	35.400179	35.464381	negative	MGI_C57BL6J_95704	Ggta1	NCBI_Gene:14594,ENSEMBL:ENSMUSG00000035778	MGI:95704	protein coding gene	glycoprotein galactosyltransferase alpha 1, 3
2	gene	35.436321	35.437311	negative	MGI_C57BL6J_5663898	Gm43761	ENSEMBL:ENSMUSG00000106856	MGI:5663898	unclassified gene	predicted gene 43761
2	pseudogene	35.483380	35.483905	negative	MGI_C57BL6J_3649616	Gm13444	NCBI_Gene:100418291,ENSEMBL:ENSMUSG00000081841	MGI:3649616	pseudogene	predicted gene 13444
2	pseudogene	35.491207	35.491929	negative	MGI_C57BL6J_3649614	Gm13445	NCBI_Gene:666042,ENSEMBL:ENSMUSG00000081421	MGI:3649614	pseudogene	predicted gene 13445
2	gene	35.492024	35.504928	negative	MGI_C57BL6J_5594419	Gm35260	NCBI_Gene:102638778	MGI:5594419	lncRNA gene	predicted gene, 35260
2	gene	35.502647	35.506092	positive	MGI_C57BL6J_5594361	Gm35202	NCBI_Gene:108168745,ENSEMBL:ENSMUSG00000085668	MGI:5594361	lncRNA gene	predicted gene, 35202
2	gene	35.549534	35.558702	negative	MGI_C57BL6J_3649869	Gm13446	NCBI_Gene:100042194,ENSEMBL:ENSMUSG00000086555	MGI:3649869	lncRNA gene	predicted gene 13446
2	gene	35.558266	35.730994	positive	MGI_C57BL6J_1916851	Dab2ip	NCBI_Gene:69601,ENSEMBL:ENSMUSG00000026883	MGI:1916851	protein coding gene	disabled 2 interacting protein
2	gene	35.751226	35.979913	negative	MGI_C57BL6J_1921660	Ttll11	NCBI_Gene:74410,ENSEMBL:ENSMUSG00000026885	MGI:1921660	protein coding gene	tubulin tyrosine ligase-like family, member 11
2	gene	35.762865	35.765879	negative	MGI_C57BL6J_5663897	Gm43760	ENSEMBL:ENSMUSG00000107106	MGI:5663897	unclassified gene	predicted gene 43760
2	gene	35.819190	35.823385	positive	MGI_C57BL6J_1924915	9030204H09Rik	NCBI_Gene:77665,ENSEMBL:ENSMUSG00000086449	MGI:1924915	lncRNA gene	RIKEN cDNA 9030204H09 gene
2	gene	35.840416	35.847182	positive	MGI_C57BL6J_3641721	Gm10829	NCBI_Gene:108168746,ENSEMBL:ENSMUSG00000106994	MGI:3641721	lncRNA gene	predicted gene 10829
2	gene	35.882598	35.930556	positive	MGI_C57BL6J_5594555	Gm35396	NCBI_Gene:102638963	MGI:5594555	lncRNA gene	predicted gene, 35396
2	gene	35.979929	35.980242	positive	MGI_C57BL6J_1925295	4930564I24Rik	NA	NA	unclassified gene	RIKEN cDNA 4930564I24 gene
2	gene	36.027558	36.030952	negative	MGI_C57BL6J_5622683	Gm39798	NCBI_Gene:105244130	MGI:5622683	lncRNA gene	predicted gene, 39798
2	gene	36.036326	36.049406	negative	MGI_C57BL6J_1915625	Ndufa8	NCBI_Gene:68375,ENSEMBL:ENSMUSG00000026895	MGI:1915625	protein coding gene	NADH:ubiquinone oxidoreductase subunit A8
2	gene	36.049458	36.079718	positive	MGI_C57BL6J_1922745	Morn5	NCBI_Gene:75495,ENSEMBL:ENSMUSG00000026894	MGI:1922745	protein coding gene	MORN repeat containing 5
2	gene	36.066118	36.069289	negative	MGI_C57BL6J_5663901	Gm43764	ENSEMBL:ENSMUSG00000107351	MGI:5663901	unclassified gene	predicted gene 43764
2	gene	36.081950	36.105998	negative	MGI_C57BL6J_1306803	Lhx6	NCBI_Gene:16874,ENSEMBL:ENSMUSG00000026890	MGI:1306803	protein coding gene	LIM homeobox protein 6
2	gene	36.087356	36.087498	negative	MGI_C57BL6J_5531335	Gm27953	ENSEMBL:ENSMUSG00000098312	MGI:5531335	unclassified non-coding RNA gene	predicted gene, 27953
2	gene	36.116079	36.136773	negative	MGI_C57BL6J_1915139	Rbm18	NCBI_Gene:67889,ENSEMBL:ENSMUSG00000026889	MGI:1915139	protein coding gene	RNA binding motif protein 18
2	gene	36.136389	36.190647	positive	MGI_C57BL6J_1915121	Mrrf	NCBI_Gene:67871,ENSEMBL:ENSMUSG00000026887	MGI:1915121	protein coding gene	mitochondrial ribosome recycling factor
2	pseudogene	36.137339	36.137703	negative	MGI_C57BL6J_3649767	Gm13428	ENSEMBL:ENSMUSG00000081496	MGI:3649767	pseudogene	predicted gene 13428
2	gene	36.191009	36.193743	positive	MGI_C57BL6J_5826372	Gm46735	NCBI_Gene:108168747	MGI:5826372	protein coding gene	predicted gene, 46735
2	gene	36.201896	36.212903	positive	MGI_C57BL6J_3651652	Gm13429	NCBI_Gene:100040493,ENSEMBL:ENSMUSG00000085141	MGI:3651652	lncRNA gene	predicted gene 13429
2	gene	36.216744	36.252275	positive	MGI_C57BL6J_97797	Ptgs1	NCBI_Gene:19224,ENSEMBL:ENSMUSG00000047250	MGI:97797	protein coding gene	prostaglandin-endoperoxide synthase 1
2	gene	36.216777	36.222934	positive	MGI_C57BL6J_3650776	Gm13431	ENSEMBL:ENSMUSG00000087187	MGI:3650776	lncRNA gene	predicted gene 13431
2	gene	36.248709	36.250730	negative	MGI_C57BL6J_5663758	Gm43621	ENSEMBL:ENSMUSG00000106933	MGI:5663758	unclassified gene	predicted gene 43621
2	pseudogene	36.285023	36.285918	positive	MGI_C57BL6J_3030168	Olfr334-ps1	NCBI_Gene:257991,ENSEMBL:ENSMUSG00000083034	MGI:3030168	pseudogene	olfactory receptor 334, pseudogene 1
2	pseudogene	36.301541	36.302479	positive	MGI_C57BL6J_3030169	Olfr335-ps	NCBI_Gene:666118,ENSEMBL:ENSMUSG00000113163	MGI:3030169	polymorphic pseudogene	olfactory receptor 335, pseudogene
2	pseudogene	36.323324	36.324263	positive	MGI_C57BL6J_3030170	Olfr336-ps1	NCBI_Gene:258093,ENSEMBL:ENSMUSG00000082583	MGI:3030170	pseudogene	olfactory receptor 336, pseudogene 1
2	pseudogene	36.336611	36.337161	positive	MGI_C57BL6J_3030171	Olfr337-ps1	NCBI_Gene:258092,ENSEMBL:ENSMUSG00000080936	MGI:3030171	pseudogene	olfactory receptor 337, pseudogene 1
2	gene	36.373519	36.382433	positive	MGI_C57BL6J_3030172	Olfr338	NCBI_Gene:258949,ENSEMBL:ENSMUSG00000068950	MGI:3030172	protein coding gene	olfactory receptor 338
2	pseudogene	36.389132	36.389597	positive	MGI_C57BL6J_3651032	Gm13430	NCBI_Gene:101056240,ENSEMBL:ENSMUSG00000083101	MGI:3651032	pseudogene	predicted gene 13430
2	gene	36.418947	36.426123	positive	MGI_C57BL6J_3030173	Olfr339	NCBI_Gene:258951,ENSEMBL:ENSMUSG00000094464	MGI:3030173	protein coding gene	olfactory receptor 339
2	gene	36.452587	36.453525	positive	MGI_C57BL6J_3030174	Olfr340	NCBI_Gene:258953,ENSEMBL:ENSMUSG00000094266	MGI:3030174	protein coding gene	olfactory receptor 340
2	gene	36.473721	36.482468	negative	MGI_C57BL6J_3030175	Olfr341	NCBI_Gene:258952,ENSEMBL:ENSMUSG00000075387	MGI:3030175	protein coding gene	olfactory receptor 341
2	gene	36.524998	36.530790	positive	MGI_C57BL6J_3030176	Olfr342	NCBI_Gene:258950,ENSEMBL:ENSMUSG00000111869	MGI:3030176	protein coding gene	olfactory receptor 342
2	pseudogene	36.526820	36.526897	positive	MGI_C57BL6J_6096949	Gm47783	ENSEMBL:ENSMUSG00000110769	MGI:6096949	pseudogene	predicted gene, 47783
2	pseudogene	36.539197	36.539948	positive	MGI_C57BL6J_3030177	Olfr343-ps1	NCBI_Gene:404379,ENSEMBL:ENSMUSG00000080960	MGI:3030177	pseudogene	olfactory receptor 343, pseudogene 1
2	gene	36.566662	36.576178	positive	MGI_C57BL6J_3030178	Olfr344	NCBI_Gene:258621,ENSEMBL:ENSMUSG00000096822	MGI:3030178	protein coding gene	olfactory receptor 344
2	gene	36.640041	36.640976	positive	MGI_C57BL6J_3030179	Olfr345	NCBI_Gene:258947,ENSEMBL:ENSMUSG00000059251	MGI:3030179	protein coding gene	olfactory receptor 345
2	gene	36.685788	36.691293	positive	MGI_C57BL6J_3030180	Olfr346	NCBI_Gene:258940,ENSEMBL:ENSMUSG00000094764	MGI:3030180	protein coding gene	olfactory receptor 346
2	gene	36.731902	36.737640	positive	MGI_C57BL6J_3030181	Olfr347	NCBI_Gene:258945,ENSEMBL:ENSMUSG00000111863	MGI:3030181	protein coding gene	olfactory receptor 347
2	pseudogene	36.768688	36.769260	positive	MGI_C57BL6J_3650785	Gm13438	ENSEMBL:ENSMUSG00000082251	MGI:3650785	pseudogene	predicted gene 13438
2	gene	36.784276	36.789998	positive	MGI_C57BL6J_3030182	Olfr348	NCBI_Gene:258946,ENSEMBL:ENSMUSG00000049315	MGI:3030182	protein coding gene	olfactory receptor 348
2	gene	36.790538	36.797392	positive	MGI_C57BL6J_1333746	Olfr50	NCBI_Gene:18350,ENSEMBL:ENSMUSG00000111021	MGI:1333746	protein coding gene	olfactory receptor 50
2	pseudogene	36.807789	36.808427	negative	MGI_C57BL6J_3651005	Gm13436	NCBI_Gene:624088,ENSEMBL:ENSMUSG00000083716	MGI:3651005	pseudogene	predicted gene 13436
2	gene	36.811492	36.817032	negative	MGI_C57BL6J_102697	Olfr3	NCBI_Gene:18328,ENSEMBL:ENSMUSG00000075384	MGI:102697	protein coding gene	olfactory receptor 3
2	pseudogene	36.844458	36.845126	positive	MGI_C57BL6J_3030183	Olfr349-ps1	NCBI_Gene:257999,ENSEMBL:ENSMUSG00000084078	MGI:3030183	pseudogene	olfactory receptor 349, pseudogene 1
2	gene	36.846310	36.851702	positive	MGI_C57BL6J_3030184	Olfr350	NCBI_Gene:258620,ENSEMBL:ENSMUSG00000050015	MGI:3030184	protein coding gene	olfactory receptor 350
2	gene	36.857539	36.862660	negative	MGI_C57BL6J_3030185	Olfr351	NCBI_Gene:258944,ENSEMBL:ENSMUSG00000075383	MGI:3030185	protein coding gene	olfactory receptor 351
2	gene	36.868460	36.872785	positive	MGI_C57BL6J_3030186	Olfr352	NCBI_Gene:258942,ENSEMBL:ENSMUSG00000053146	MGI:3030186	protein coding gene	olfactory receptor 352
2	gene	36.887293	36.892936	negative	MGI_C57BL6J_3030187	Olfr353	NCBI_Gene:258943,ENSEMBL:ENSMUSG00000075382	MGI:3030187	protein coding gene	olfactory receptor 353
2	gene	36.905680	36.916038	positive	MGI_C57BL6J_3030188	Olfr354	NCBI_Gene:258941,ENSEMBL:ENSMUSG00000055088	MGI:3030188	protein coding gene	olfactory receptor 354
2	pseudogene	36.909057	36.909590	positive	MGI_C57BL6J_3650985	Gm13440	NCBI_Gene:100417113,ENSEMBL:ENSMUSG00000081591	MGI:3650985	pseudogene	predicted gene 13440
2	gene	36.925190	36.928897	negative	MGI_C57BL6J_3030189	Olfr355	NCBI_Gene:258618,ENSEMBL:ENSMUSG00000075380	MGI:3030189	protein coding gene	olfactory receptor 355
2	gene	36.937121	36.938068	positive	MGI_C57BL6J_3030190	Olfr356	NCBI_Gene:258617,ENSEMBL:ENSMUSG00000070943	MGI:3030190	protein coding gene	olfactory receptor 356
2	gene	36.993827	37.001847	positive	MGI_C57BL6J_3030191	Olfr357	NCBI_Gene:258616,ENSEMBL:ENSMUSG00000055838	MGI:3030191	protein coding gene	olfactory receptor 357
2	gene	37.002163	37.009335	negative	MGI_C57BL6J_3030192	Olfr358	NCBI_Gene:227789,ENSEMBL:ENSMUSG00000075379	MGI:3030192	protein coding gene	olfactory receptor 358
2	pseudogene	37.019263	37.020208	negative	MGI_C57BL6J_3030193	Olfr359-ps1	NCBI_Gene:258091,ENSEMBL:ENSMUSG00000081737	MGI:3030193	pseudogene	olfactory receptor 359, pseudogene 1
2	pseudogene	37.036024	37.036432	positive	MGI_C57BL6J_3650780	Gm13439	ENSEMBL:ENSMUSG00000081174	MGI:3650780	pseudogene	predicted gene 13439
2	gene	37.065746	37.069651	positive	MGI_C57BL6J_3030194	Olfr360	NCBI_Gene:258615,ENSEMBL:ENSMUSG00000083361	MGI:3030194	protein coding gene	olfactory receptor 360
2	pseudogene	37.074022	37.083236	negative	MGI_C57BL6J_3652333	Gm13437	NCBI_Gene:108168728,ENSEMBL:ENSMUSG00000083431	MGI:3652333	pseudogene	predicted gene 13437
2	gene	37.083736	37.089290	negative	MGI_C57BL6J_3030195	Olfr361	NCBI_Gene:258365,ENSEMBL:ENSMUSG00000075378	MGI:3030195	protein coding gene	olfactory receptor 361
2	gene	37.101706	37.117910	negative	MGI_C57BL6J_3030196	Olfr362	NCBI_Gene:259053,ENSEMBL:ENSMUSG00000075377	MGI:3030196	protein coding gene	olfactory receptor 362
2	pseudogene	37.106257	37.106583	negative	MGI_C57BL6J_3030197	Olfr363-ps	NCBI_Gene:404380,ENSEMBL:ENSMUSG00000068948	MGI:3030197	pseudogene	olfactory receptor 363, pseudogene
2	pseudogene	37.139322	37.148585	positive	MGI_C57BL6J_3030198	Olfr364-ps1	NCBI_Gene:227794,ENSEMBL:ENSMUSG00000078198	MGI:3030198	pseudogene	olfactory receptor 364, pseudogene 1
2	gene	37.188198	37.206019	positive	MGI_C57BL6J_3030199	Olfr365	NCBI_Gene:258656,ENSEMBL:ENSMUSG00000059429	MGI:3030199	protein coding gene	olfactory receptor 365
2	pseudogene	37.207051	37.208073	positive	MGI_C57BL6J_3650576	Gm13435	NCBI_Gene:100416052,ENSEMBL:ENSMUSG00000083815	MGI:3650576	pseudogene	predicted gene 13435
2	gene	37.211574	37.224506	positive	MGI_C57BL6J_3030200	Olfr366	NCBI_Gene:236509,ENSEMBL:ENSMUSG00000068947	MGI:3030200	protein coding gene	olfactory receptor 366
2	pseudogene	37.266951	37.271387	positive	MGI_C57BL6J_3030201	Olfr367-ps	NCBI_Gene:545417,ENSEMBL:ENSMUSG00000049094	MGI:3030201	pseudogene	olfactory receptor 367, pseudogene
2	gene	37.282051	37.282157	positive	MGI_C57BL6J_5452083	Gm22306	ENSEMBL:ENSMUSG00000064626	MGI:5452083	snRNA gene	predicted gene, 22306
2	gene	37.326515	37.332772	positive	MGI_C57BL6J_3030202	Olfr368	NCBI_Gene:258371,ENSEMBL:ENSMUSG00000049018	MGI:3030202	protein coding gene	olfactory receptor 368
2	gene	37.350074	37.359820	negative	MGI_C57BL6J_1914716	Pdcl	NCBI_Gene:67466,ENSEMBL:ENSMUSG00000009030	MGI:1914716	protein coding gene	phosducin-like
2	gene	37.370066	37.423408	negative	MGI_C57BL6J_2442789	Rc3h2	NCBI_Gene:319817,ENSEMBL:ENSMUSG00000075376	MGI:2442789	protein coding gene	ring finger and CCCH-type zinc finger domains 2
2	gene	37.400047	37.400157	negative	MGI_C57BL6J_3819563	Snord90	NCBI_Gene:100217435,ENSEMBL:ENSMUSG00000077756	MGI:3819563	snoRNA gene	small nucleolar RNA, C/D box 90
2	gene	37.425500	37.443171	negative	MGI_C57BL6J_2442998	Zbtb6	NCBI_Gene:241322,ENSEMBL:ENSMUSG00000066798	MGI:2442998	protein coding gene	zinc finger and BTB domain containing 6
2	gene	37.432168	37.443135	negative	MGI_C57BL6J_2444402	Zbtb26	NCBI_Gene:320633,ENSEMBL:ENSMUSG00000050714	MGI:2444402	protein coding gene	zinc finger and BTB domain containing 26
2	gene	37.443279	37.566454	positive	MGI_C57BL6J_2385139	Rabgap1	NCBI_Gene:227800,ENSEMBL:ENSMUSG00000035437	MGI:2385139	protein coding gene	RAB GTPase activating protein 1
2	gene	37.483228	37.703967	negative	MGI_C57BL6J_104626	Strbp	NCBI_Gene:20744,ENSEMBL:ENSMUSG00000026915	MGI:104626	protein coding gene	spermatid perinuclear RNA binding protein
2	pseudogene	37.488675	37.489444	positive	MGI_C57BL6J_5010078	Gm17893	NCBI_Gene:100416053,ENSEMBL:ENSMUSG00000107491	MGI:5010078	pseudogene	predicted gene, 17893
2	gene	37.516332	37.520603	positive	MGI_C57BL6J_2441890	Gpr21	NCBI_Gene:338346,ENSEMBL:ENSMUSG00000053164	MGI:2441890	protein coding gene	G protein-coupled receptor 21
2	pseudogene	37.659146	37.659521	positive	MGI_C57BL6J_5690455	Gm44063	ENSEMBL:ENSMUSG00000108226	MGI:5690455	pseudogene	predicted gene, 44063
2	pseudogene	37.672056	37.673004	positive	MGI_C57BL6J_3649448	Gm13543	NCBI_Gene:639491,ENSEMBL:ENSMUSG00000083745	MGI:3649448	pseudogene	predicted gene 13543
2	gene	37.688201	37.688284	negative	MGI_C57BL6J_4950453	Mir5128	miRBase:MI0018040,NCBI_Gene:100628597,ENSEMBL:ENSMUSG00000092958	MGI:4950453	miRNA gene	microRNA 5128
2	gene	37.776225	37.799103	positive	MGI_C57BL6J_2679260	Crb2	NCBI_Gene:241324,ENSEMBL:ENSMUSG00000035403	MGI:2679260	protein coding gene	crumbs family member 2
2	gene	37.798990	38.287390	negative	MGI_C57BL6J_2442794	Dennd1a	NCBI_Gene:227801,ENSEMBL:ENSMUSG00000035392	MGI:2442794	protein coding gene	DENN/MADD domain containing 1A
2	gene	38.015218	38.019167	negative	MGI_C57BL6J_5690675	Gm44283	ENSEMBL:ENSMUSG00000107586	MGI:5690675	unclassified gene	predicted gene, 44283
2	gene	38.025795	38.031427	positive	MGI_C57BL6J_5690835	Gm44443	ENSEMBL:ENSMUSG00000108155	MGI:5690835	unclassified gene	predicted gene, 44443
2	gene	38.104432	38.107296	negative	MGI_C57BL6J_5690683	Gm44291	ENSEMBL:ENSMUSG00000107529	MGI:5690683	unclassified gene	predicted gene, 44291
2	gene	38.218368	38.218973	positive	MGI_C57BL6J_1916508	2610030P05Rik	NA	NA	unclassified gene	RIKEN cDNA 2610030P05 gene
2	gene	38.221854	38.224504	negative	MGI_C57BL6J_2444953	8030493G06Rik	NA	NA	unclassified gene	RIKEN cDNA 8030493G06 gene
2	gene	38.225041	38.225122	negative	MGI_C57BL6J_5690847	Gm44455	ENSEMBL:ENSMUSG00000105046	MGI:5690847	miRNA gene	predicted gene, 44455
2	gene	38.285307	38.287291	positive	MGI_C57BL6J_3651929	Gm13556	ENSEMBL:ENSMUSG00000087294	MGI:3651929	lncRNA gene	predicted gene 13556
2	gene	38.335271	38.339227	negative	MGI_C57BL6J_5826373	Gm46736	NCBI_Gene:108168748	MGI:5826373	lncRNA gene	predicted gene, 46736
2	gene	38.339281	38.369737	positive	MGI_C57BL6J_96785	Lhx2	NCBI_Gene:16870,ENSEMBL:ENSMUSG00000000247	MGI:96785	protein coding gene	LIM homeobox protein 2
2	gene	38.347246	38.350648	negative	MGI_C57BL6J_5521040	Gm27197	NCBI_Gene:102639358,ENSEMBL:ENSMUSG00000098383	MGI:5521040	lncRNA gene	predicted gene 27197
2	gene	38.359580	38.363980	negative	MGI_C57BL6J_3650662	Gm13584	ENSEMBL:ENSMUSG00000087539	MGI:3650662	lncRNA gene	predicted gene 13584
2	gene	38.424002	38.455851	positive	MGI_C57BL6J_3649991	Gm13589	ENSEMBL:ENSMUSG00000085950	MGI:3649991	lncRNA gene	predicted gene 13589
2	gene	38.468277	38.502499	negative	MGI_C57BL6J_5622684	Gm39799	NCBI_Gene:105244132	MGI:5622684	lncRNA gene	predicted gene, 39799
2	gene	38.480338	38.480445	positive	MGI_C57BL6J_5454858	Gm25081	ENSEMBL:ENSMUSG00000064468	MGI:5454858	snRNA gene	predicted gene, 25081
2	pseudogene	38.490022	38.490516	positive	MGI_C57BL6J_3650686	Gm13588	NCBI_Gene:100462931,ENSEMBL:ENSMUSG00000084124	MGI:3650686	pseudogene	predicted gene 13588
2	gene	38.500192	38.505048	positive	MGI_C57BL6J_5690454	Gm44062	ENSEMBL:ENSMUSG00000107883	MGI:5690454	unclassified gene	predicted gene, 44062
2	gene	38.511643	38.594606	positive	MGI_C57BL6J_1891638	Nek6	NCBI_Gene:59126,ENSEMBL:ENSMUSG00000026749	MGI:1891638	protein coding gene	NIMA (never in mitosis gene a)-related expressed kinase 6
2	gene	38.519683	38.524922	positive	MGI_C57BL6J_5826374	Gm46737	NCBI_Gene:108168750	MGI:5826374	lncRNA gene	predicted gene, 46737
2	gene	38.532817	38.535707	negative	MGI_C57BL6J_5594967	Gm35808	NCBI_Gene:102639509,ENSEMBL:ENSMUSG00000108210	MGI:5594967	lncRNA gene	predicted gene, 35808
2	gene	38.564727	38.566354	negative	MGI_C57BL6J_5690575	Gm44183	ENSEMBL:ENSMUSG00000107535	MGI:5690575	unclassified gene	predicted gene, 44183
2	gene	38.588036	38.644087	negative	MGI_C57BL6J_107637	Psmb7	NCBI_Gene:19177,ENSEMBL:ENSMUSG00000026750	MGI:107637	protein coding gene	proteasome (prosome, macropain) subunit, beta type 7
2	pseudogene	38.619785	38.623335	positive	MGI_C57BL6J_3649994	Gm13586	NCBI_Gene:108168749,ENSEMBL:ENSMUSG00000082931	MGI:3649994	pseudogene	predicted gene 13586
2	gene	38.637018	38.637143	negative	MGI_C57BL6J_5531016	Gm27634	ENSEMBL:ENSMUSG00000095278	MGI:5531016	miRNA gene	predicted gene, 27634
2	pseudogene	38.668954	38.689748	positive	MGI_C57BL6J_2685845	Adgrd2-ps	NCBI_Gene:674251,ENSEMBL:ENSMUSG00000083722	MGI:2685845	pseudogene	adhesion G protein-coupled receptor D2, pseudogene
2	gene	38.669475	38.670922	negative	MGI_C57BL6J_5595903	Gm36744	NCBI_Gene:102640750	MGI:5595903	lncRNA gene	predicted gene, 36744
2	gene	38.672537	38.676552	positive	MGI_C57BL6J_3712464	Gm13587	ENSEMBL:ENSMUSG00000087062	MGI:3712464	lncRNA gene	predicted gene 13587
2	gene	38.692656	38.714559	negative	MGI_C57BL6J_1346833	Nr5a1	NCBI_Gene:26423,ENSEMBL:ENSMUSG00000026751	MGI:1346833	protein coding gene	nuclear receptor subfamily 5, group A, member 1
2	gene	38.712676	38.720638	positive	MGI_C57BL6J_1918544	Nr5a1os	ENSEMBL:ENSMUSG00000087164	MGI:1918544	antisense lncRNA gene	nuclear receptor subfamily 5, group A, member 1, opposite strand
2	gene	38.723369	38.927688	negative	MGI_C57BL6J_1352459	Nr6a1	NCBI_Gene:14536,ENSEMBL:ENSMUSG00000063972	MGI:1352459	protein coding gene	nuclear receptor subfamily 6, group A, member 1
2	gene	38.757871	38.758686	negative	MGI_C57BL6J_5690538	Gm44146	ENSEMBL:ENSMUSG00000108124	MGI:5690538	unclassified gene	predicted gene, 44146
2	pseudogene	38.776729	38.778884	positive	MGI_C57BL6J_3650246	Rpl15-ps4	NCBI_Gene:102631502,ENSEMBL:ENSMUSG00000082508	MGI:3650246	pseudogene	ribosomal protein L15, pseudogene 4
2	gene	38.821285	38.919113	positive	MGI_C57BL6J_3649430	Nr6a1os	NCBI_Gene:102640822,ENSEMBL:ENSMUSG00000085201	MGI:3649430	antisense lncRNA gene	nuclear receptor subfamily 6, group A, member 1, opposite strand
2	gene	38.852735	38.852810	positive	MGI_C57BL6J_2676845	Mir181a-2	miRBase:MI0000223,NCBI_Gene:387176,ENSEMBL:ENSMUSG00000065423	MGI:2676845	miRNA gene	microRNA 181a-2
2	gene	38.852978	38.854937	negative	MGI_C57BL6J_5690536	Gm44144	ENSEMBL:ENSMUSG00000107884	MGI:5690536	unclassified gene	predicted gene, 44144
2	gene	38.853830	38.853918	positive	MGI_C57BL6J_3618736	Mir181b-2	miRBase:MI0000823,NCBI_Gene:723903,ENSEMBL:ENSMUSG00000065578	MGI:3618736	miRNA gene	microRNA 181b-2
2	gene	38.862163	38.865533	positive	MGI_C57BL6J_1917874	5730507A11Rik	ENSEMBL:ENSMUSG00000107468	MGI:1917874	unclassified gene	RIKEN cDNA 5730507A11 gene
2	gene	38.931978	38.963753	positive	MGI_C57BL6J_2444741	Olfml2a	NCBI_Gene:241327,ENSEMBL:ENSMUSG00000046618	MGI:2444741	protein coding gene	olfactomedin-like 2A
2	pseudogene	38.939343	38.939929	positive	MGI_C57BL6J_3652338	Gm13473	ENSEMBL:ENSMUSG00000083776	MGI:3652338	pseudogene	predicted gene 13473
2	pseudogene	38.973947	38.976816	positive	MGI_C57BL6J_3652316	Gm13474	NCBI_Gene:624652,ENSEMBL:ENSMUSG00000084184	MGI:3652316	pseudogene	predicted gene 13474
2	gene	38.979373	38.981646	positive	MGI_C57BL6J_5622686	Gm39801	NCBI_Gene:105244134	MGI:5622686	lncRNA gene	predicted gene, 39801
2	gene	38.981829	38.988596	negative	MGI_C57BL6J_5589144	Gm29985	NCBI_Gene:102631715	MGI:5589144	lncRNA gene	predicted gene, 29985
2	gene	38.996713	38.998258	negative	MGI_C57BL6J_3651033	Gm13496	ENSEMBL:ENSMUSG00000085755	MGI:3651033	lncRNA gene	predicted gene 13496
2	gene	38.997476	39.006168	positive	MGI_C57BL6J_1923896	Wdr38	NCBI_Gene:76646,ENSEMBL:ENSMUSG00000035295	MGI:1923896	protein coding gene	WD repeat domain 38
2	gene	39.001580	39.005624	negative	MGI_C57BL6J_1913739	Rpl35	NCBI_Gene:66489,ENSEMBL:ENSMUSG00000062997	MGI:1913739	protein coding gene	ribosomal protein L35
2	gene	39.005348	39.015878	positive	MGI_C57BL6J_1921442	Arpc5l	NCBI_Gene:74192,ENSEMBL:ENSMUSG00000026755	MGI:1921442	protein coding gene	actin related protein 2/3 complex, subunit 5-like
2	gene	39.016155	39.065581	negative	MGI_C57BL6J_1924149	Golga1	NCBI_Gene:76899,ENSEMBL:ENSMUSG00000026754	MGI:1924149	protein coding gene	golgi autoantigen, golgin subfamily a, 1
2	gene	39.027777	39.027883	positive	MGI_C57BL6J_5455904	Gm26127	ENSEMBL:ENSMUSG00000065127	MGI:5455904	snRNA gene	predicted gene, 26127
2	gene	39.066214	39.190734	negative	MGI_C57BL6J_2443716	Scai	NCBI_Gene:320271,ENSEMBL:ENSMUSG00000035236	MGI:2443716	protein coding gene	suppressor of cancer cell invasion
2	gene	39.080119	39.116581	positive	MGI_C57BL6J_5589226	Gm30067	NCBI_Gene:102631828	MGI:5589226	lncRNA gene	predicted gene, 30067
2	pseudogene	39.153964	39.154689	positive	MGI_C57BL6J_5010976	Gm18791	NCBI_Gene:100417731,ENSEMBL:ENSMUSG00000107833	MGI:5010976	pseudogene	predicted gene, 18791
2	pseudogene	39.157486	39.162235	negative	MGI_C57BL6J_4360990	Gm16523	NCBI_Gene:100042584,ENSEMBL:ENSMUSG00000082315	MGI:4360990	pseudogene	predicted gene, 16523
2	gene	39.178562	39.182041	negative	MGI_C57BL6J_5690419	Gm44027	ENSEMBL:ENSMUSG00000107955	MGI:5690419	unclassified gene	predicted gene, 44027
2	gene	39.194354	39.226451	negative	MGI_C57BL6J_1915107	Ppp6c	NCBI_Gene:67857,ENSEMBL:ENSMUSG00000026753	MGI:1915107	protein coding gene	protein phosphatase 6, catalytic subunit
2	pseudogene	39.216932	39.217294	negative	MGI_C57BL6J_3649413	Gm13511	ENSEMBL:ENSMUSG00000083157	MGI:3649413	pseudogene	predicted gene 13511
2	pseudogene	39.237126	39.237441	negative	MGI_C57BL6J_3650156	Gm13504	ENSEMBL:ENSMUSG00000083686	MGI:3650156	pseudogene	predicted gene 13504
2	pseudogene	39.274070	39.274870	positive	MGI_C57BL6J_3757651	Vmn2r-ps2	NCBI_Gene:100041126,ENSEMBL:ENSMUSG00000081144	MGI:3757651	pseudogene	vomeronasal 2, receptor, pseudogene 2
2	pseudogene	39.394976	39.399735	positive	MGI_C57BL6J_3649429	Gm13506	NCBI_Gene:100503769,ENSEMBL:ENSMUSG00000083401	MGI:3649429	pseudogene	predicted gene 13506
2	pseudogene	39.524667	39.525396	negative	MGI_C57BL6J_3651619	Gm13454	NCBI_Gene:606733,ENSEMBL:ENSMUSG00000081839	MGI:3651619	pseudogene	predicted gene 13454
2	pseudogene	39.558142	39.558733	negative	MGI_C57BL6J_3651620	Gm13451	NCBI_Gene:100417621,ENSEMBL:ENSMUSG00000084285	MGI:3651620	pseudogene	predicted gene 13451
2	pseudogene	39.574630	39.575726	positive	MGI_C57BL6J_3651621	Gm13452	NCBI_Gene:100417168,ENSEMBL:ENSMUSG00000082015	MGI:3651621	pseudogene	predicted gene 13452
2	pseudogene	39.658852	39.658971	negative	MGI_C57BL6J_5690336	Gm43944	ENSEMBL:ENSMUSG00000108203	MGI:5690336	pseudogene	predicted gene, 43944
2	gene	39.723995	39.727599	positive	MGI_C57BL6J_5690362	Gm43970	ENSEMBL:ENSMUSG00000107699	MGI:5690362	unclassified gene	predicted gene, 43970
2	pseudogene	40.126908	40.127927	negative	MGI_C57BL6J_3651618	Gm13453	NCBI_Gene:100042604,ENSEMBL:ENSMUSG00000083240	MGI:3651618	pseudogene	predicted gene 13453
2	pseudogene	40.177022	40.177455	positive	MGI_C57BL6J_3651864	Gm13457	ENSEMBL:ENSMUSG00000084171	MGI:3651864	pseudogene	predicted gene 13457
2	pseudogene	40.178195	40.178724	negative	MGI_C57BL6J_3651863	Gm13458	NCBI_Gene:606732,ENSEMBL:ENSMUSG00000083398	MGI:3651863	pseudogene	predicted gene 13458
2	pseudogene	40.287162	40.287678	positive	MGI_C57BL6J_3652077	Gm13455	ENSEMBL:ENSMUSG00000081577	MGI:3652077	pseudogene	predicted gene 13455
2	gene	40.298517	40.298642	positive	MGI_C57BL6J_5454244	Gm24467	ENSEMBL:ENSMUSG00000088512	MGI:5454244	snoRNA gene	predicted gene, 24467
2	pseudogene	40.555685	40.557432	positive	MGI_C57BL6J_3651389	Gm13456	NCBI_Gene:666531,ENSEMBL:ENSMUSG00000082536	MGI:3651389	pseudogene	predicted gene 13456
2	gene	40.595246	42.653631	negative	MGI_C57BL6J_2151136	Lrp1b	NCBI_Gene:94217,ENSEMBL:ENSMUSG00000049252	MGI:2151136	protein coding gene	low density lipoprotein-related protein 1B
2	gene	40.598374	40.598543	negative	MGI_C57BL6J_5530730	Gm27348	ENSEMBL:ENSMUSG00000098953	MGI:5530730	unclassified non-coding RNA gene	predicted gene, 27348
2	pseudogene	40.958372	40.959354	positive	MGI_C57BL6J_3649843	Gm13462	NCBI_Gene:100418156,ENSEMBL:ENSMUSG00000082930	MGI:3649843	pseudogene	predicted gene 13462
2	pseudogene	40.998857	40.999209	positive	MGI_C57BL6J_3650104	Gm13460	ENSEMBL:ENSMUSG00000083260	MGI:3650104	pseudogene	predicted gene 13460
2	gene	41.292759	41.340995	positive	MGI_C57BL6J_5589297	Gm30138	NCBI_Gene:102631931	MGI:5589297	lncRNA gene	predicted gene, 30138
2	pseudogene	41.985973	41.988866	negative	MGI_C57BL6J_3650103	Gm13461	NCBI_Gene:625094,ENSEMBL:ENSMUSG00000081999	MGI:3650103	pseudogene	predicted gene 13461
2	gene	42.068453	42.069904	negative	MGI_C57BL6J_1923453	6430605C03Rik	NA	NA	unclassified gene	RIKEN cDNA 6430605C03 gene
2	pseudogene	42.124621	42.124853	positive	MGI_C57BL6J_3649844	Gm13463	ENSEMBL:ENSMUSG00000081085	MGI:3649844	pseudogene	predicted gene 13463
2	gene	42.137841	42.138763	negative	MGI_C57BL6J_1918815	9030418E23Rik	NA	NA	unclassified gene	RIKEN cDNA 9030418E23 gene
2	gene	42.447439	42.447568	negative	MGI_C57BL6J_5530966	Mir6336	miRBase:MI0021864,NCBI_Gene:102465171,ENSEMBL:ENSMUSG00000098660	MGI:5530966	miRNA gene	microRNA 6336
2	gene	42.809035	42.809167	positive	MGI_C57BL6J_5454127	Gm24350	ENSEMBL:ENSMUSG00000105844,ENSEMBL:ENSMUSG00000077351	MGI:5454127	snoRNA gene	predicted gene, 24350
2	gene	42.872692	42.918557	positive	MGI_C57BL6J_5622688	Gm39803	NCBI_Gene:105244136	MGI:5622688	lncRNA gene	predicted gene, 39803
2	gene	43.128301	43.131632	positive	MGI_C57BL6J_5589384	Gm30225	NCBI_Gene:102632051	MGI:5589384	lncRNA gene	predicted gene, 30225
2	pseudogene	43.518282	43.519416	negative	MGI_C57BL6J_3649845	Gm13464	NCBI_Gene:100041245,ENSEMBL:ENSMUSG00000080994	MGI:3649845	pseudogene	predicted gene 13464
2	gene	43.555257	43.683048	positive	MGI_C57BL6J_1918039	Kynu	NCBI_Gene:70789,ENSEMBL:ENSMUSG00000026866	MGI:1918039	protein coding gene	kynureninase
2	gene	43.710210	43.729442	negative	MGI_C57BL6J_5589533	Gm30374	NCBI_Gene:102632242	MGI:5589533	lncRNA gene	predicted gene, 30374
2	gene	43.738335	43.787408	negative	MGI_C57BL6J_5622689	Gm39804	NCBI_Gene:105244137	MGI:5622689	lncRNA gene	predicted gene, 39804
2	gene	43.748782	44.395953	positive	MGI_C57BL6J_1923367	Arhgap15	NCBI_Gene:76117,ENSEMBL:ENSMUSG00000049744	MGI:1923367	protein coding gene	Rho GTPase activating protein 15
2	gene	43.925083	43.928222	positive	MGI_C57BL6J_2442624	A530045O15Rik	NA	NA	unclassified gene	RIKEN cDNA A530045O15 gene
2	gene	43.992540	43.996587	positive	MGI_C57BL6J_1923263	5830407E08Rik	NA	NA	unclassified gene	RIKEN cDNA 5830407E08 gene
2	gene	44.059238	44.065324	negative	MGI_C57BL6J_2444930	Arhgap15os	NCBI_Gene:320872,ENSEMBL:ENSMUSG00000085089	MGI:2444930	antisense lncRNA gene	Rho GTPase activating protein 15, opposite strand
2	gene	44.201370	44.204949	positive	MGI_C57BL6J_2443055	A430068E04Rik	NA	NA	unclassified gene	RIKEN cDNA A430068E04 gene
2	gene	44.428935	44.429043	positive	MGI_C57BL6J_5452644	Gm22867	ENSEMBL:ENSMUSG00000088124	MGI:5452644	snRNA gene	predicted gene, 22867
2	gene	44.432260	44.462504	positive	MGI_C57BL6J_5622690	Gm39805	NCBI_Gene:105244138	MGI:5622690	lncRNA gene	predicted gene, 39805
2	gene	44.495300	44.501041	negative	MGI_C57BL6J_5622691	Gm39806	NCBI_Gene:105244139	MGI:5622691	lncRNA gene	predicted gene, 39806

Interactive term

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, intcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	6.072836	7.187210
0.05	5.995795	7.113505
0.1	5.899258	7.017120

#summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, gm$gmap, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i]," - ICI vs. EOI  (with interactive)"))
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}


print("with normal kinship")

[1] “with normal kinship”

outki <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=kinship)

#plot_lod(outki,gm$gmap)

outk.new <- outki-outka

plot_lod(outk.new,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=K)

#plot_lod(outi,gm$gmap)

out.new <- outi-outa

plot_lod(out.new,gm$gmap)

out = out.new

peaks<-find_peaks(out, gm$gmap, threshold=3, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	5	72.261	3.496753	72.196	73.089

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- as.character(peaks$chr[i])
  lod <- peaks$lod[i]
  pos <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$pos[i] & mapdf$chr == peaks$chr[i])]
  ci_lo <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_lo[i] & mapdf$chr == peaks$chr[i])]
  ci_hi <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_hi[i] & mapdf$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	5	132.729238	3.49675308884655	132.584706	133.404613

for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, covars[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  coeff <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, intcovar=addcovar, kinship=K[[chr]])
  blup <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, kinship=K[[chr]])

  #plot_coef(coeff, 
  #     gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1coeff])")
  #     )

  plot_coef(blup, 
       gm$gmap[chr], columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1blup])")
       )
  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))


}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
5	gene	132.7506	132.7565	negative	MGI_C57BL6J_5595687	Gm36528	NCBI_Gene:102640478	MGI:5595687	lncRNA gene	predicted gene, 36528
5	gene	132.7962	132.7964	positive	MGI_C57BL6J_5611601	Gm38373	ENSEMBL:ENSMUSG00000103500	MGI:5611601	unclassified gene	predicted gene, 38373
5	gene	132.8017	132.8020	positive	MGI_C57BL6J_5455499	Gm25722	ENSEMBL:ENSMUSG00000088123	MGI:5455499	unclassified non-coding RNA gene	predicted gene, 25722

R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] abind_1.4-5       qtl2_0.22         reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_0.8.5       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] whisker_0.4       getopt_1.20.3     later_1.0.0       git2r_0.26.1     
[29] ellipsis_0.3.2    cachem_1.0.5      withr_2.4.2       mnormt_1.5-7     
[33] magrittr_2.0.1    crayon_1.4.1      memoise_2.0.0     evaluate_0.14    
[37] fs_1.4.1          fansi_0.5.0       nlme_3.1-142      xml2_1.3.1       
[41] tools_3.6.2       hms_0.5.3         lifecycle_1.0.0   stringr_1.4.0    
[45] Rhdf5lib_1.6.3    munsell_0.5.0     compiler_3.6.2    rlang_0.4.11     
[49] grid_3.6.2        rstudioapi_0.13   rmarkdown_2.1     gtable_0.3.0     
[53] DBI_1.1.1         R6_2.5.0          fastmap_1.1.0     bit_4.0.4        
[57] utf8_1.2.1        rprojroot_1.3-2   readr_1.3.1       stringi_1.7.2    
[61] parallel_3.6.2    Rcpp_1.0.7        vctrs_0.3.8       tidyselect_1.0.0 
[65] xfun_0.24

QTL Analysis - rz transformed rz.age [ICI vs EOI]

Belinda Cornes

2022-02-11

Loading Data

Genome-wide scan

No additive covariates

Additive covariates

Interactive term