Serreze Workflow - 5 batches (additonal analysis)

Neogen Files At A Glance [Total Samples: 312]
Haplotype Phasing
- 1. Experiment Design
2. Genotype QC (Part 1)
3. Phenotype QC
- continous phenotypes (age of onset)
4. Genotype QC (Part 2)
5. QTL Analysis
- binary phenotpe (diabetic status/group)
- continous phenotypes (age of onset)
6. Power Analysis

Last updated: 2022-07-12

Checks: 6 1

Knit directory: Serreze-T1D_Workflow/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20220210)

The command set.seed(20220210) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: a8c2d1a

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version a8c2d1a. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    analysis/.DS_Store
    Ignored:    data/.DS_Store

Untracked files:
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_0.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_52.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_mis_0.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_mis_52.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_mis_vo.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_vo.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_ici-early.vs.pbs.ici-late_5.batches.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_ici-early.vs.pbs.ici-late_5.batches_mis.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs.ici-late_5.batches.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs.ici-late_5.batches_mis.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs.ici-late_snpsqc_5.batches.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs.ici-late_snpsqc_5.batches_mis.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs.ici-late_snpsqc_dis_no-x_updated_5.batches.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs.ici-late_snpsqc_dis_no-x_updated_5.batches_mis.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated_5.batches_11.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated_5.batches_mis_11.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_1-peak.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_1-peak.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_1-peak_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_1-peak_test.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_2-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_2-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_2-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_3-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_3-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_conditional_3-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_1-peak.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_1-peak.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_1-peak_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_2-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_2-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_2-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_3-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_3-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_5.batches_mis_conditional_3-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_1.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_1-peak.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_1-peak.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_1-peak_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_2-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_2-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_2-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_3-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_3-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_conditional_3-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_1.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_1-peak.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_1-peak.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_1-peak_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_2-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_2-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_2-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_3-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_3-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_conditional_3-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_1.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_11.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_1-peak.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_1-peak.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_1-peak_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_2-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_2-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_2-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_3-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_3-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_conditional_3-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_11.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_1-peak.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_1-peak.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_1-peak_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_1.peak.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_2-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_2-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_2-peaks_ahb.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_3-peaks.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_3-peaks.Rmd.R
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_conditional_3-peaks_ahb.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs.ici-late_pheno.corrected.cleaned_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs.ici-late_pheno.corrected.cleaned_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_changed.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_changed.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_scanone_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_scanone_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_oops.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_v2.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.4.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.4_miss.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.5.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.5_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs.ici-late_pheno.corrected.cleaned_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs.ici-late_pheno.corrected.cleaned_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs.ici-late_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_vo.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_vo1.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_vo.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_vo1.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_conditional.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_conditional_1-peak.Rmd.R
    Untracked:  analysis/genotype.frequencies_ici-early.vs.pbs.ici-late_5.batches.Rmd
    Untracked:  analysis/genotype.frequencies_ici-early.vs.pbs.ici-late_5.batches_mis.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_0.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_52.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_mis_0.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_mis_52.Rmd
    Untracked:  analysis/index_5.batches_additional_vo.Rmd
    Untracked:  analysis/index_5.batches_extra.Rmd
    Untracked:  analysis/index_5.batches_old.Rmd
    Untracked:  analysis/power.analysis_ici.vs.eoi_5.batches.Rmd
    Untracked:  analysis/power.analysis_ici.vs.eoi_5.batches.Rmd.R
    Untracked:  analysis/power.analysis_ici.vs.eoi_5.batches_mis.Rmd
    Untracked:  analysis/power.analysis_ici.vs.eoi_5.batches_mis.Rmd.R
    Untracked:  analysis/power.analysis_ici.vs.pbs_5.batches.Rmd
    Untracked:  analysis/power.analysis_ici.vs.pbs_5.batches.Rmd.R
    Untracked:  analysis/power.analysis_ici.vs.pbs_5.batches_mis.Rmd
    Untracked:  analysis/power.analysis_ici.vs.pbs_5.batches_mis.Rmd.R
    Untracked:  data/GM_covar.csv
    Untracked:  data/GM_covar_BC312.csv
    Untracked:  data/bad_markers_all_4.batches.RData
    Untracked:  data/bad_markers_all_5.batches.RData
    Untracked:  data/blup_sub_chr10_lod.drop-1.5_5.batches.csv
    Untracked:  data/blup_sub_chr3_lod.drop-1.5.csv
    Untracked:  data/blup_sub_chr3_lod.drop-1.5_5.batches.csv
    Untracked:  data/blup_sub_chr4_lod.drop-1.5.csv
    Untracked:  data/blup_sub_chr4_lod.drop-1.5_5.batches.csv
    Untracked:  data/covar_cleaned_ici.vs.eoi.csv
    Untracked:  data/covar_cleaned_ici.vs.pbs.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs.ici-late_5.batches.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs.ici-late_5.batches_mis.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi1.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_mis.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_mis_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_mis_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs1.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs.ici-late_5.batches.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs.ici-late_5.batches_mis.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/covar_corrected_ici.vs.eoi.csv
    Untracked:  data/covar_corrected_ici.vs.eoi1.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_0.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_52.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_mis.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_mis_0.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_mis_52.csv
    Untracked:  data/covar_corrected_ici.vs.pbs.csv
    Untracked:  data/covar_corrected_ici.vs.pbs1.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/e.RData
    Untracked:  data/e_BC312.RData
    Untracked:  data/e_snpg_samqc_4.batches.RData
    Untracked:  data/e_snpg_samqc_4.batches_bc.RData
    Untracked:  data/e_snpg_samqc_5.batches.RData
    Untracked:  data/errors_ind_4.batches.RData
    Untracked:  data/errors_ind_4.batches_bc.RData
    Untracked:  data/errors_ind_5.batches.RData
    Untracked:  data/files.to.sync.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_additive.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_interacting.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_sex_additive.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_sex_interacting.txt
    Untracked:  data/g2blup_effects.csv
    Untracked:  data/g2blup_effects.xlsx
    Untracked:  data/genes_chr10_lod.drop-1.5_5.batches.csv
    Untracked:  data/genes_chr3_lod.drop-1.5.csv
    Untracked:  data/genes_chr3_lod.drop-1.5_5.batches.csv
    Untracked:  data/genes_chr4_lod.drop-1.5.csv
    Untracked:  data/genetic_map.csv
    Untracked:  data/genetic_map_BC312.csv
    Untracked:  data/genotype_errors_marker_4.batches.RData
    Untracked:  data/genotype_errors_marker_5.batches.RData
    Untracked:  data/genotype_freq_marker_4.batches.RData
    Untracked:  data/genotype_freq_marker_5.batches.RData
    Untracked:  data/gm_allqc_4.batches.RData
    Untracked:  data/gm_allqc_5.batches.RData
    Untracked:  data/gm_allqc_5.batches_mis.RData
    Untracked:  data/gm_samqc_3.batches.RData
    Untracked:  data/gm_samqc_4.batches.RData
    Untracked:  data/gm_samqc_4.batches_bc.RData
    Untracked:  data/gm_samqc_5.batches.RData
    Untracked:  data/gm_serreze.192.RData
    Untracked:  data/gm_serreze.BC312.RData
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-additive.covariates_blup_sub_chr-6_peak.marker-UNC11006703_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-additive.covariates_blup_sub_chr-6_peak.marker-UNC11006703_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-additive.covariates_blup_sub_chr-6_peak.marker-cr27snv203_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-additive.covariates_genes_chr-6_peak.marker-UNC11006703_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-additive.covariates_genes_chr-6_peak.marker-UNC11006703_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-additive.covariates_genes_chr-6_peak.marker-cr27snv203_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_blup_sub_chr-1_peak.marker-ICR134_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_blup_sub_chr-1_peak.marker-ICR4119_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_blup_sub_chr-1_peak.marker-JAX00262446_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_blup_sub_chr-1_peak.marker-UNCHS001938_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_blup_sub_chr-6_peak.marker-UNC11008761_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_blup_sub_chr-6_peak.marker-UNCHS016990_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_genes_chr-1_peak.marker-ICR134_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_genes_chr-1_peak.marker-ICR4119_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_genes_chr-1_peak.marker-JAX00262446_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_genes_chr-1_peak.marker-UNCHS001938_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_genes_chr-6_peak.marker-UNC11008761_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-interactive.covariate_genes_chr-6_peak.marker-UNCHS016990_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNC28655293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-5_peak.marker-UNC8675939_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNC28655293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-5_peak.marker-UNC8675939_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-10_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-10_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-11_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-11_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-12_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-12_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-13_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-13_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-14_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-14_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-15_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-15_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-16_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-16_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-17_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-17_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-18_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-18_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-19_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-19_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-1_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-1_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-2_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-2_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-3_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-3_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-4_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-4_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-5_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-6_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-6_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-7_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-7_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-8_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-8_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-9_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-9_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-X_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-X_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-10_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-10_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-11_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-11_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-12_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-12_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-13_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-13_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-14_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-14_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-15_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-15_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-16_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-16_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-17_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-17_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-18_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-18_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-19_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-19_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-1_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-1_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-2_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-2_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-3_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-3_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-4_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-4_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-5_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-6_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-6_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-7_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-7_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-8_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-8_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-9_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-9_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-X_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-X_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_gm_qtl_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_gm_qtl_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_gm_qtl_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_gm_qtl_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_gm_qtl_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.geno.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.probs.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs.ici-late_scanone_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs.ici-late_scanone_5.batches_mis.Rdata
    Untracked:  data/ici-early.vs.pbs.ici-late_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs.ici-late_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici-early.vs.pbs.ici-late_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs.ici-late_scanone_snpsqc_dis_no-x_updated_5.batches_mis.Rdata
    Untracked:  data/ici-early.vs.pbs_age.of.onset-additive.covariates_blup_sub_chr-7_peak.marker-UNC13388811_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-additive.covariates_genes_chr-7_peak.marker-UNC13388811_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_scanone_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_5.batches_mis.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches_mis.Rdata
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00020646_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00294019_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18363544_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC20090524_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106210_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00107193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00522922_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00524205_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00535764_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5046545_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5062524_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5068215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5257268_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5264696_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5270225_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5309136_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5329171_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5916997_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008409_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008432_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008627_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008659_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008725_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009066_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009068_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009112_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009821_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNCHS012955_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00020646_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00294019_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18363544_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-11_peak.marker-UNC20090524_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106210_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00107193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00522922_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00524205_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00535764_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5046545_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5062524_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5068215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5257268_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5264696_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5270225_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5309136_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5329171_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5916997_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008409_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008432_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008627_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008659_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008725_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009066_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009068_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009112_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009821_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNCHS012955_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-ICR4295_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18154330_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18195765_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18856953_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCJPD004316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCJPD009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19155926_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19481366_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNCJPD004792_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-12_peak.marker-ICR4497_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-13_peak.marker-UNCHS036964_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-18_peak.marker-UNCHS045344_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-19_peak.marker-UNCJPD007087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-2_peak.marker-UNC4609660_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-B6_rs31740628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR1269_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR5325_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR5347_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR5348_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00104971_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00105059_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00105203_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00107930_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00107980_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00108068_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00108114_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00109750_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00189245_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00517218_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00517906_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00518418_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00518684_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00520122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00524717_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00524828_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00525380_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00525709_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00527291_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00527587_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00531601_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00532122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4673471_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4681411_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4793677_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4799475_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4909830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4914130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4964062_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4985064_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4991565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5001723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5042361_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5182782_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5240484_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5256922_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5266711_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5274554_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5328596_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5350384_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5354724_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5375208_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5384072_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5400314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5433945_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5435874_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5466669_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5517972_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5522257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5523265_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5532424_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5553882_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5572051_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5582753_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5589260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5595555_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5623239_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5639830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5680234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5682314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5725356_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5727351_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5734420_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5743257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5751567_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5752623_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5776974_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5788507_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5792468_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5794598_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5795561_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5802298_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5806628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5817478_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5836999_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5841501_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5847927_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5966417_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008129_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008173_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008231_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008235_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008253_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008256_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008311_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008317_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008372_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008410_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008415_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008431_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008651_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008802_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008803_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008808_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008834_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008838_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008928_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008948_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008959_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008973_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008987_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009001_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009025_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009034_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009109_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009142_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009207_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009216_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009306_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009364_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009377_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009387_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009395_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009413_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009428_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009463_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009503_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009541_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009560_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009574_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001315_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001355_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001373_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC6851205_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8299912_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8300499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8381981_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8436434_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8439633_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8530763_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS012948_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS012976_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013139_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013304_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-5_peak.marker-JAX00590770_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-ICR1830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNC13170794_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNCHS019480_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-cr31snv87_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15430711_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-9_peak.marker-UNC17203329_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-9_peak.marker-UNCHS024593_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNC30627130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNCHS048313_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches_mis.mis.txt
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-ICR4295_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18154330_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18195765_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18856953_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCJPD004316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCJPD009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19155926_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19481366_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNCJPD004792_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-12_peak.marker-ICR4497_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-13_peak.marker-UNCHS036964_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-18_peak.marker-UNCHS045344_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-19_peak.marker-UNCJPD007087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-2_peak.marker-UNC4609660_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-B6_rs31740628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR1269_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR5325_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR5347_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR5348_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00104971_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00105059_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00105203_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00107930_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00107980_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00108068_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00108114_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00109750_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00189245_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00517218_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00517906_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00518418_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00518684_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00520122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00524717_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00524828_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00525380_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00525709_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00527291_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00527587_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00531601_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00532122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4673471_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4681411_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4793677_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4799475_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4909830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4914130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4964062_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4985064_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4991565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5001723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5042361_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5182782_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5240484_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5256922_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5266711_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5274554_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5328596_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5350384_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5354724_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5375208_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5384072_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5400314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5433945_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5435874_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5466669_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5517972_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5522257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5523265_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5532424_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5553882_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5572051_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5582753_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5589260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5595555_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5623239_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5639830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5680234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5682314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5725356_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5727351_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5734420_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5743257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5751567_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5752623_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5776974_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5788507_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5792468_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5794598_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5795561_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5802298_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5806628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5817478_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5836999_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5841501_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5847927_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5966417_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008129_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008173_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008231_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008235_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008253_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008256_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008311_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008317_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008372_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008410_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008415_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008431_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008651_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008802_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008803_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008808_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008834_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008838_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008928_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008948_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008959_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008973_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008987_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009001_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009025_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009034_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009109_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009142_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009207_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009216_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009306_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009364_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009377_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009387_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009395_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009413_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009428_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009463_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009503_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009541_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009560_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009574_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001315_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001355_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001373_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC6851205_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8299912_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8300499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8381981_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8436434_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8439633_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8530763_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS012948_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS012976_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013139_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013304_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-5_peak.marker-JAX00590770_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-ICR1830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNC13170794_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNCHS019480_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-cr31snv87_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15430711_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-9_peak.marker-UNC17203329_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-9_peak.marker-UNCHS024593_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNC30627130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNCHS048313_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_5.batches.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18382395_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS029024_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-ICR2047_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00112499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00219554_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4837069_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5006948_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5300878_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5679155_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5945286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC6227106_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008595_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001341_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-sanger2623_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-6_peak.marker-UNCHS018170_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-6_peak.marker-UNCHS018231_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18382395_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS029024_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-ICR2047_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00112499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00219554_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4837069_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5006948_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5300878_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5679155_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5945286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC6227106_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008595_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCJPD001246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCJPD001341_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-sanger2623_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-6_peak.marker-UNCHS018170_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-6_peak.marker-UNCHS018231_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed_5.batches.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed_5.batches.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed_5.batches.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_scanone_5.batches.Rdata
    Untracked:  data/ici.vs.eoi_scanone_5.batches_mis.Rdata
    Untracked:  data/ici.vs.eoi_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici.vs.eoi_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici.vs.eoi_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNC28655293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-5_peak.marker-UNC8675939_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNC28655293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-5_peak.marker-UNC8675939_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_bad.markers_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-15_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-15_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-15_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-17_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-17_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-17_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-13_peak.marker-UNC22384241_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_1-peak-chr3.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_1-peak-chr4.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-19_peak.marker-UNC29893228_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-19_peak.marker-UNC29990033_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-19_peak.marker-UNCHS047192_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-4_peak.marker-UNCHS012304_lod.drop-1.5_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-5_peak.marker-UNCJPD008862_lod.drop-1.5_5.batches_mis_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-5_peak.marker-UNCJPD008862_lod.drop-1.5_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-8_peak.marker-UNCHS023364_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_additive_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_interacting_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_additive_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_interacting_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_genes_chr-13_peak.marker-UNC22384241_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_1-peak-chr3.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_1-peak-chr4.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_genes_chr-19_peak.marker-UNC29893228_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-19_peak.marker-UNC29990033_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-19_peak.marker-UNCHS047192_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-4_peak.marker-UNCHS012304_lod.drop-1.5_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_genes_chr-5_peak.marker-UNCJPD008862_lod.drop-1.5_5.batches_mis_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_genes_chr-5_peak.marker-UNCJPD008862_lod.drop-1.5_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_genes_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-8_peak.marker-UNCHS023364_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_conditional_1-peak-chr3.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_conditional_1-peak-chr4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis_conditional_1-peak-chr3.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis_conditional_1-peak-chr4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis_conditional_1-peak-chr3.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis_conditional_1-peak-chr4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_conditional_1-peak-chr3.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_conditional_1-peak-chr4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_conditional_1-peak-chr10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_conditional_1-peak-chr3.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_conditional_1-peak-chr4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_conditional_2-peaks-chr3-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_conditional_2-peaks-chr3-4.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_conditional_2-peaks-chr4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_conditional_3-peaks-chr3-4-10.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratiov_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratiov_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-JAX00153527_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-JAX00153527_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNCHS020486_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-JAX00153527_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-JAX00153527_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNCHS020486_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_5.batches.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_5.batches.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed_5.batches.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_scanone_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_5.batches_mis.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches_mis.Rdata
    Untracked:  data/mean.differences_age.of.onset_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_5.batches.csv
    Untracked:  data/mean.differences_age.of.onset_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_5.batches_mis.csv
    Untracked:  data/mean.differences_age.of.onset_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches.csv
    Untracked:  data/mean.differences_age.of.onset_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches_mis.csv
    Untracked:  data/mean.differences_group_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_5.batches.csv
    Untracked:  data/mean.differences_group_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_5.batches_mis.csv
    Untracked:  data/mean.differences_group_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches.csv
    Untracked:  data/mean.differences_group_ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_5.batches_mis.csv
    Untracked:  data/percent_missing_id_3.batches.RData
    Untracked:  data/percent_missing_id_4.batches.RData
    Untracked:  data/percent_missing_id_4.batches_bc.RData
    Untracked:  data/percent_missing_id_5.batches.RData
    Untracked:  data/percent_missing_marker_4.batches.RData
    Untracked:  data/percent_missing_marker_5.batches.RData
    Untracked:  data/pheno.csv
    Untracked:  data/pheno_BC312.csv
    Untracked:  data/physical_map.csv
    Untracked:  data/physical_map_BC312.csv
    Untracked:  data/qc_info_bad_sample_3.batches.RData
    Untracked:  data/qc_info_bad_sample_4.batches.RData
    Untracked:  data/qc_info_bad_sample_4.batches_bc.RData
    Untracked:  data/qc_info_bad_sample_5.batches.RData
    Untracked:  data/remaining.markers_geno.freq.xlsx
    Untracked:  data/sample_geno.csv
    Untracked:  data/sample_geno_AHB_BC312.csv
    Untracked:  data/sample_geno_bc.csv
    Untracked:  data/sample_geno_bc_BC312.csv
    Untracked:  data/serreze_probs.rds
    Untracked:  data/serreze_probs_BC312.rds
    Untracked:  data/serreze_probs_allqc.rds
    Untracked:  data/serreze_probs_allqc_5.batches.rds
    Untracked:  data/serreze_probs_allqc_5.batches_mis.rds
    Untracked:  data/summary.cg_3.batches.RData
    Untracked:  data/summary.cg_4.batches.RData
    Untracked:  data/summary.cg_4.batches_bc.RData
    Untracked:  data/summary.cg_5.batches.RData
    Untracked:  output/Percent_missing_genotype_data_5.batches.pdf
    Untracked:  output/Percent_missing_genotype_data_per_marker_5.batches.pdf
    Untracked:  output/Proportion_matching_genotypes_before_removal_of_bad_samples_5.batches.pdf
    Untracked:  output/genotype_error_marker_5.batches.pdf
    Untracked:  output/genotype_frequency_marker_5.batches.pdf

Unstaged changes:
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs_5.batches.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs_5.batches_mis.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs_snpsqc_5.batches.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs_snpsqc_5.batches_mis.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs_snpsqc_dis_no-x_updated_5.batches.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici-early.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/genotype.frequencies_ici.vs.eoi_5.batches.Rmd
    Modified:   analysis/genotype.frequencies_ici.vs.eoi_5.batches_mis.Rmd
    Modified:   analysis/genotype.frequencies_ici.vs.pbs_5.batches.Rmd
    Modified:   analysis/genotype.frequencies_ici.vs.pbs_5.batches_mis.Rmd
    Modified:   analysis/index_5.batches.Rmd
    Modified:   analysis/index_5.batches_additional.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index_5.batches_additional.Rmd) and HTML (docs/index_5.batches_additional.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	a8c2d1a	Belinda Cornes	2022-04-13	additonal analysis - peaks and continuous variables
html	a8c2d1a	Belinda Cornes	2022-04-13	additonal analysis - peaks and continuous variables
html	d0c63e8	Belinda Cornes	2022-04-10	analysis for 5 batches htmls
Rmd	c98df6c	Belinda Cornes	2022-04-10	analysis for 5 batches Rmds

Neogen Files At A Glance [Total Samples: 312]

Samples: The_Jackson_Lab_Serreze_MURGIGV01_20201209
- Total Samples: 24
Samples: The_Jackson_Lab_Serreze_MURGIGV01_20210527
- Total Samples: 72
Samples: The_Jackson_Lab_Serreze_MURGIGV01_20210909
- Total Samples: 72
Samples: The_Jackson_Lab_Serreze_MURGIGV01_20211101
- Total Samples: 24
Samples: The_Jackson_Lab_Serreze_MURGIGV01_220220328
- Total Samples: 120
Preparing files for QC/Haplotype Phasing

Haplotype Phasing

minimum probability set for estimation of genotypes

1. Experiment Design


abbreviations for strains:	AB: het; AA: hom
type of cross:	Backcross
number of mice phenotyped:	312
total number of mice phenotypes:	2 [1 binary/1 quantiative]
phenotypes:	diabetic status/group [binary] & age of onset [continuous]
number of mice:	312
number of markers:	137302
covariates:	sex [F: 312; M: 0] (sex not used as all females); binary diabetic status for continous traits

2. Genotype QC (Part 1)

Step 1: Sample QC
Step 2: SNP QC (Monomorphic, Genotype Error & Missing Data)
- Removing missing data
- Removing monomorphic, genotype error & missing Data FINAL
Step 3: Preparing Files for QTL Analysis
- Using datatset with missing markers removed
- Using datatset with monomorphic, genotype error & missing markers removed FINAL

3. Phenotype QC

continous phenotypes (age of onset)

all phenotypes have been corrected

ICI vs PBS & ICI-Early vs PBS & ICI vs EOI (EOI set as missing)
- Using datatset with missing markers removed
- Using datatset with monomorphic, genotype error & missing markers removed FINAL
ICI vs PBS & ICI-Early vs PBS & ICI vs EOI (EOI as arbitrary value == 0)
- Using datatset with missing markers removed
- Using datatset with monomorphic, genotype error & missing markers removed FINAL
ICI vs PBS & ICI-Early vs PBS & ICI vs EOI (EOI as arbitrary value == 52)
- Using datatset with missing markers removed
- Using datatset with monomorphic, genotype error & missing markers removed FINAL
ICI-Early vs PBS & ICI-Late only
- Using datatset with missing markers removed
- Using datatset with monomorphic, genotype error & missing markers removed outcome the same as ICI vs PBS FINAL

4. Genotype QC (Part 2)

Step 4: Disproportionate markers per contrast group
- ICI vs EOI
  - EOI (in ICI vs EOI) as missing
    - Using datatset with missing markers removed
    - Using datatset with monomorphic, genotype error & missing markers removed FINAL
  - EOI (in ICI vs EOI) as arbitrary value == 0
    - Using datatset with missing markers removed
    - Using datatset with monomorphic, genotype error & missing markers removed FINAL
  - EOI (in ICI vs EOI) as arbitrary value == 52
    - Using datatset with missing markers removed
    - Using datatset with monomorphic, genotype error & missing markers removed FINAL
- ICI vs PBS
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed FINAL
- ICI-Early vs PBS
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed FINAL
- ICI-Early vs PBS & ICI-Late
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed outcome the same as ICI vs PBS FINAL

5. QTL Analysis

binary phenotpe (diabetic status/group)

no kinship included for this model as r/qtl2 does not allow it.

ICI vs EOI

Performed continious analysis with age of onset as well (see below) but given the type of phenotype it is (that is, disease status), the binary model is the correct model to use
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar) FINAL

The following sample groups have also been done with age of onset as all samples have a value:

ICI vs PBS
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
- Further removal of disproportionate markers in these group samples
ICI-Early vs PBS
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar) FINAL
ICI-Early vs PBS & ICI-Late
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar) FINAL

Correcting for `ICI vs EOI` peak markers (conditional analysis)

ICI vs PBS
- No further markers removed
  - Using datatset with missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar)
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar)
    - One peak
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL
    - Two peaks
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL
    - Three peaks
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL

continous phenotypes (age of onset)

covariate used in all analyses for each sample set was disease status which was binary (that is, diabetes/no diabetes or yes/no)

age of onset

ICI vs EOI

Note: Given that the ‘ici vs. eoi’ group represents mice who have diabetes or do not have diabetes, the binary model is the appropriate model to use.

However, I did perform QTL mapping for the conitnous traits setting:

EOI to missing (so essentially this will just perform QTL mapping on ICI), so this is not informative
EOI to 0 (last time I performed the analysis this is what I used)
EOI to 52 (thought I would give a very high number to represent unknown)

For 2 & 3 putting in the same value for 164 samples (over half of the total samples in this sample group) affects the ability to correct the distribution. Again, this will not be ideal given that r/qtl2 requires the phenotype to be normally distributed

EOI (in ICI vs EOI) as missing
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
EOI (in ICI vs EOI) as arbitrary value == 0
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
EOI (in ICI vs EOI) as arbitrary value == 52
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
ICI vs PBS
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
ICI-Early vs PBS
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
ICI-Early vs PBS & ICI-Late
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL

Correcting for `ICI vs EOI` peak markers (conditional analysis)

ICI vs PBS
- No further markers removed
  - Using datatset with missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship)
    - One peak
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL
    - Two peaks
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL
    - Three peaks
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL

age of onset (rank normalised)

ICI vs EOI

see above for note.

EOI (in ICI vs EOI) as missing
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
EOI (in ICI vs EOI) as arbitrary value == 0
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
EOI (in ICI vs EOI) as arbitrary value == 52
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
ICI vs PBS
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
ICI-Early vs PBS
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL
ICI-Early vs PBS & ICI-Late
- No further markers removed
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
  - Using datatset with monomorphic, genotype error & missing markers removed
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship) FINAL same as ICI vs PBS

Correcting for `ICI vs EOI` peak markers (conditional analysis)

ICI vs PBS
- No further markers removed
  - Using datatset with missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
- Further removal of Low Frequency markers in these group samples
  - Using datatset with missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
- Further removal of disproportionate markers in these group samples
  - Using datatset with missing markers removed (no xcovar or kinship)
    - One peak
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Two peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
    - Three peaks
      - using genotypes from cross object for covariates
      - using raw genotypes for covariates
  - Using datatset with monomorphic, genotype error & missing markers removed (no xcovar or kinship)
    - One peak
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL
    - Two peaks
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL
    - Three peaks
      - using genotypes from cross object for covariates FINAL
      - using raw genotypes for covariates FINAL

6. Power Analysis

ICI vs EOI
- Using datatset with missing & disproporational markers removed
- Using datatset with monomorphic, genotype error, missing & disproporational markers removed FINAL
ICI vs PBS
- Using datatset with missing & disproporational markers removed
- Using datatset with monomorphic, genotype error, missing & disproporational markers removed FINAL

R version 3.5.1 (2018-07-02)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS  10.15.7

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggrepel_0.8.2     qtlcharts_0.11-6  qtl2_0.22         broman_0.69-5    
 [5] ggplot2_3.3.6     tibble_3.1.7      readxl_1.4.0      cluster_2.0.7-1  
 [9] dplyr_1.0.9       optparse_1.6.6    mclust_5.4.5      tidyr_1.2.0      
[13] data.table_1.14.2 knitr_1.29        kableExtra_1.3.4  workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.4.6      svglite_1.2.3     assertthat_0.2.1  rprojroot_1.3-2  
 [5] digest_0.6.25     utf8_1.1.4        R6_2.4.1          cellranger_1.1.0 
 [9] backports_1.1.5   RSQLite_2.2.0     evaluate_0.14     httr_1.4.3       
[13] pillar_1.7.0      gdtools_0.2.1     rlang_1.0.3       rstudioapi_0.13  
[17] blob_1.2.1        whisker_0.4       rmarkdown_2.3     qtl_1.46-2       
[21] webshot_0.5.3     stringr_1.4.0     bit_1.1-15.2      munsell_0.5.0    
[25] compiler_3.5.1    httpuv_1.5.2      xfun_0.15         pkgconfig_2.0.3  
[29] systemfonts_0.1.1 htmltools_0.5.2   tidyselect_1.1.2  fansi_0.4.1      
[33] viridisLite_0.3.0 crayon_1.5.1      withr_2.5.0       later_1.0.0      
[37] grid_3.5.1        jsonlite_1.8.0    gtable_0.3.0      lifecycle_1.0.1  
[41] DBI_1.1.0         git2r_0.26.1      magrittr_2.0.3    scales_1.1.1     
[45] cli_3.3.0         stringi_1.4.6     fs_1.3.2          promises_1.1.0   
[49] getopt_1.20.3     xml2_1.3.2        ellipsis_0.3.2    generics_0.0.2   
[53] vctrs_0.4.1       tools_3.5.1       bit64_0.9-7       glue_1.6.2       
[57] purrr_0.3.4       parallel_3.5.1    fastmap_1.1.0     yaml_2.2.1       
[61] colorspace_1.4-1  rvest_1.0.2       memoise_1.1.0

Serreze Workflow - 5 batches (additonal analysis)

Belinda Cornes

2022-07-12

Neogen Files At A Glance [Total Samples: 312]

Haplotype Phasing

1. Experiment Design

2. Genotype QC (Part 1)

3. Phenotype QC

continous phenotypes (age of onset)

4. Genotype QC (Part 2)

5. QTL Analysis

binary phenotpe (diabetic status/group)

Correcting for ICI vs EOI peak markers (conditional analysis)

continous phenotypes (age of onset)

age of onset

Correcting for ICI vs EOI peak markers (conditional analysis)

age of onset (rank normalised)

Correcting for ICI vs EOI peak markers (conditional analysis)

6. Power Analysis

Correcting for `ICI vs EOI` peak markers (conditional analysis)

Correcting for `ICI vs EOI` peak markers (conditional analysis)

Correcting for `ICI vs EOI` peak markers (conditional analysis)