QTL Analysis - binary [ICI vs EOI]

workflowr

• Summary
• Checks
• Past versions

Last updated: 2022-03-09

Checks: 6 1

Knit directory: Serreze-T1D_Workflow/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

---

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20220210)

The command set.seed(20220210) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: absolute

Using absolute paths to the files within your workflowr project makes it difficult for you and others to run your code on a different machine. Change the absolute path(s) below to the suggested relative path(s) to make your code more reproducible.

absolute	relative
/Users/corneb/Documents/MyJax/CS/Projects/Serreze/qc/workflowr/Serreze-T1D_Workflow	.

Repository version: 46d3df1

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 46d3df1. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .DS_Store
    Ignored:    analysis/.DS_Store

Untracked files:
    Untracked:  data/GM_covar.csv
    Untracked:  data/bad_markers_all_4.batches.RData
    Untracked:  data/covar_cleaned_ici.vs.eoi.csv
    Untracked:  data/covar_cleaned_ici.vs.pbs.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi1.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs1.csv
    Untracked:  data/covar_corrected_ici.vs.eoi.csv
    Untracked:  data/covar_corrected_ici.vs.eoi1.csv
    Untracked:  data/covar_corrected_ici.vs.pbs.csv
    Untracked:  data/covar_corrected_ici.vs.pbs1.csv
    Untracked:  data/e.RData
    Untracked:  data/e_snpg_samqc_4.batches.RData
    Untracked:  data/e_snpg_samqc_4.batches_bc.RData
    Untracked:  data/errors_ind_4.batches.RData
    Untracked:  data/errors_ind_4.batches_bc.RData
    Untracked:  data/genetic_map.csv
    Untracked:  data/genotype_errors_marker_4.batches.RData
    Untracked:  data/genotype_freq_marker_4.batches.RData
    Untracked:  data/gm_allqc_4.batches.RData
    Untracked:  data/gm_samqc_3.batches.RData
    Untracked:  data/gm_samqc_4.batches.RData
    Untracked:  data/gm_samqc_4.batches_bc.RData
    Untracked:  data/gm_serreze.192.RData
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed.csv
    Untracked:  data/percent_missing_id_3.batches.RData
    Untracked:  data/percent_missing_id_4.batches.RData
    Untracked:  data/percent_missing_id_4.batches_bc.RData
    Untracked:  data/percent_missing_marker_4.batches.RData
    Untracked:  data/pheno.csv
    Untracked:  data/physical_map.csv
    Untracked:  data/qc_info_bad_sample_3.batches.RData
    Untracked:  data/qc_info_bad_sample_4.batches.RData
    Untracked:  data/qc_info_bad_sample_4.batches_bc.RData
    Untracked:  data/remaining.markers_geno.freq.xlsx
    Untracked:  data/sample_geno.csv
    Untracked:  data/sample_geno_bc.csv
    Untracked:  data/serreze_probs.rds
    Untracked:  data/serreze_probs_allqc.rds
    Untracked:  data/summary.cg_3.batches.RData
    Untracked:  data/summary.cg_4.batches.RData
    Untracked:  data/summary.cg_4.batches_bc.RData

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis.Rmd) and HTML (docs/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	46d3df1	Belinda Cornes	2022-03-09	no xcovar or kinship

---

Data Information

• binary phenotype (therefore no kinship)
• low frequency (< 5% in samples) removed
• disproportionate markers removed

Loading Data

We will load the data and subset indivials out that are in the groups of interest. We will create a binary phenotype from this (EOI ==0, ICI == 1).

load("data/gm_allqc_4.batches.RData")

#gm_allqc
gm=gm_allqc
gm

Object of class cross2 (crosstype "bc")

Total individuals               188
No. genotyped individuals       188
No. phenotyped individuals      188
No. with both geno & pheno      188

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778 

#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and eoi group status
miceinfo <- gm$covar[gm$covar$group == "EOI" | gm$covar$group == "ICI",]
table(miceinfo$group)

EOI ICI 
 69  92 

mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm

Object of class cross2 (crosstype "bc")

Total individuals               161
No. genotyped individuals       161
No. phenotyped individuals      161
No. with both geno & pheno      161

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778 

table(gm$covar$group)

EOI ICI 
 69  92 

gm$covar$ICI.vs.EOI <- ifelse(gm$covar$group == "EOI", 0, 1)

covars <- read_csv("data/covar_corrected.cleaned_ici.vs.eoi.csv")
#removing any missing info
covars <- subset(covars, covars$ICI.vs.EOI!='')
nrow(covars)

[1] 161

table(covars$group)

EOI ICI 
 69  92 

#keeping only informative mice
gm <- gm[covars$Mouse.ID]
gm

Object of class cross2 (crosstype "bc")

Total individuals               161
No. genotyped individuals       161
No. phenotyped individuals      161
No. with both geno & pheno      161

No. phenotypes                    1
No. covariates                    7
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778 

table(gm$covar$group)

EOI ICI 
 69  92 

#pr.qc.ids <- pr
#for (i in 1:20){pr.qc.ids[[i]] = pr.qc.ids[[i]][covars$Mouse.ID,,]}

##dropping monomorphic markers within the dataset

g <- do.call("cbind", gm$geno)

gf_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))/sum(a != 0)))
#gn_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))))

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]

count <- rowSums(gf_mar <=0.05)
low_freq_df <- merge(as.data.frame(gf_mar),as.data.frame(count), by="row.names",all=T)
low_freq_df[is.na(low_freq_df)] <- ''
low_freq_df <- low_freq_df[low_freq_df$count == 1,]
rownames(low_freq_df) <- low_freq_df$Row.names

low_freq <- find_markerpos(gm, rownames(low_freq_df))
low_freq$id <- rownames(low_freq)

nrow(low_freq)

[1] 99077

low_freq_bad <- merge(low_freq,low_freq_df, by="row.names",all=T)
names(low_freq_bad)[1] <- c("marker")

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]
MAF <- apply(gf_mar, 1, function(x) min(x))
MAF <- as.data.frame(MAF)
MAF$index <- 1:nrow(gf_mar)
gf_mar_maf <- merge(gf_mar,as.data.frame(MAF), by="row.names")
gf_mar_maf <- gf_mar_maf[order(gf_mar_maf$index),]

gfmar <- NULL
gfmar$gfmar_mar_0 <- sum(gf_mar_maf$MAF==0)
gfmar$gfmar_mar_1 <- sum(gf_mar_maf$MAF< 0.01)
gfmar$gfmar_mar_5 <- sum(gf_mar_maf$MAF< 0.05)
gfmar$gfmar_mar_10 <- sum(gf_mar_maf$MAF< 0.10)
gfmar$gfmar_mar_15 <- sum(gf_mar_maf$MAF< 0.15)
gfmar$gfmar_mar_25 <- sum(gf_mar_maf$MAF< 0.25)
gfmar$gfmar_mar_50 <- sum(gf_mar_maf$MAF< 0.50)
gfmar$total_snps <- nrow(as.data.frame(gf_mar_maf))

gfmar <- t(as.data.frame(gfmar))
gfmar <- as.data.frame(gfmar)
gfmar$count <- gfmar$V1

gfmar[c(2)] %>%
  kable(escape = F,align = c("ccccccccc"),linesep ="\\hline") %>%
  kable_styling(full_width = F) %>%
  kable_styling("striped", full_width = F)  %>%
  row_spec(8 ,bold=T,color= "white",background = "black")

	count
gfmar_mar_0	89667
gfmar_mar_1	92615
gfmar_mar_5	99045
gfmar_mar_10	99502
gfmar_mar_15	99619
gfmar_mar_25	100097
gfmar_mar_50	131139
total_snps	131578

gm_qc <- drop_markers(gm, low_freq_bad$marker)
gm_qc <- drop_nullmarkers(gm_qc)

gm_qc

Object of class cross2 (crosstype "bc")

Total individuals              161
No. genotyped individuals      161
No. phenotyped individuals     161
No. with both geno & pheno     161

No. phenotypes                   1
No. covariates                   7
No. phenotype covariates         0

No. chromosomes                 20
Total markers                32501

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2940 2853 2033 2045 1931 2041 1858 1677 1991 1208 2057 1387 1617 1685 1194  922 
  17   18   19    X 
 382 1073 1052  555 

## dropping disproportionate markers
dismark <- read.csv("data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio.csv")
nrow(dismark)

[1] 32501

names(dismark)[1] <- c("marker")
dismark <- dismark[!dismark$Include,]
nrow(dismark)

[1] 18736

gm_qc_dis <- drop_markers(gm_qc, dismark$marker)
gm_qc_dis <- drop_nullmarkers(gm_qc_dis)

gm = gm_qc_dis
gm

Object of class cross2 (crosstype "bc")

Total individuals              161
No. genotyped individuals      161
No. phenotyped individuals     161
No. with both geno & pheno     161

No. phenotypes                   1
No. covariates                   7
No. phenotype covariates         0

No. chromosomes                 19
Total markers                13765

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   16   17 
2142 1860 1022  570  688  514 1060  294  772  205  718   11 1270 1105  490  291 
  18   19    X 
 494  208   51 

markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/physical_map.csv")
mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
rownames(mapdf) <- mapdf$marker
mapdf <- mapdf[markers,]
names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
mapdfnd <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

Genome-wide scan

For each of the phenotype analyzed, permutations were used for each model to obtain genome-wide LOD significance threshold for p < 0.01, p < 0.05, p < 0.10, respectively, separately for X and automsomes (A).

The table shows the estimated significance thresholds from permutation test.

We also looked at the kinship to see how correlated each sample is. Kinship values between pairs of samples range between 0 (no relationship) and 1.0 (completely identical). The darker the colour the more indentical the pairs are.

Xcovar <- get_x_covar(gm)
#addcovar = model.matrix(~Sex, data = covars)[,-1]

#K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
#K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

#operm <- scan1perm(pr.qc, gm$covar$phenos, Xcovar=Xcovar, n_perm=2000)
#operm <- scan1perm(pr.qc, gm$covar$phenos, addcovar = addcovar, n_perm=2000)
#operm <- scan1perm(pr.qc, gm$covar$phenos, n_perm=2000)
operm <- scan1perm(pr.qc, gm$covar["ICI.vs.EOI"], model="binary", n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.934232	2.903277
0.05	3.381052	2.591771
0.1	2.688646	2.196548

The figures below show QTL maps for each phenotype

out <- scan1(pr.qc, gm$covar["ICI.vs.EOI"], Xcovar=Xcovar, model="binary")

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, gm$gmap, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = colnames(out)[i])
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

plot_lod(out,gm$gmap)

LOD peaks

The table below shows QTL peaks associated with the phenotype. We use the 95% threshold from the permutations to find peaks.

peaks<-find_peaks(out, gm$gmap, threshold=4, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	ICI.vs.EOI	3	29.038	6.364394	21.228	35.891

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- peaks$chr[i]
  lod <- peaks$lod[i]
  pos <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$pos[i] & mapdf$chr == peaks$chr[i])]
  ci_lo <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_lo[i] & mapdf$chr == peaks$chr[i])]
  ci_hi <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_hi[i] & mapdf$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	ICI.vs.EOI	3	59.429352	6.36439381654824	48.232305	81.503929

QTL effects

For each peak LOD location we give a list of gene

query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")

for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, gm$covar[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]])
  #plot_coef(coeff, 
  #     gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1coeff])")
  #     )

  plot_coef(blup, 
       gm$gmap[chr], columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1blup])")
       )
  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	48.54642	48.57947	positive	MGI_C57BL6J_5826472	Gm46835	NCBI_Gene:108168915	MGI:5826472	lncRNA gene	predicted gene, 46835
3	gene	48.60573	48.60910	negative	MGI_C57BL6J_1913582	1700018B24Rik	NCBI_Gene:66332,ENSEMBL:ENSMUSG00000037910	MGI:1913582	lncRNA gene	RIKEN cDNA 1700018B24 gene
3	gene	48.74851	48.76095	negative	MGI_C57BL6J_5610418	Gm37190	ENSEMBL:ENSMUSG00000102181	MGI:5610418	lncRNA gene	predicted gene, 37190
3	gene	48.95472	48.95488	positive	MGI_C57BL6J_5453288	Gm23511	ENSEMBL:ENSMUSG00000065018	MGI:5453288	snRNA gene	predicted gene, 23511
3	gene	49.06237	49.09636	positive	MGI_C57BL6J_5590574	Gm31415	NCBI_Gene:102633632,ENSEMBL:ENSMUSG00000102263	MGI:5590574	lncRNA gene	predicted gene, 31415
3	gene	49.13746	49.13853	positive	MGI_C57BL6J_5611047	Gm37819	ENSEMBL:ENSMUSG00000104186	MGI:5611047	unclassified gene	predicted gene, 37819
3	pseudogene	49.20771	49.20807	negative	MGI_C57BL6J_5610912	Gm37684	ENSEMBL:ENSMUSG00000103027	MGI:5610912	pseudogene	predicted gene, 37684
3	gene	49.32568	49.36736	positive	MGI_C57BL6J_5295664	Gm20557	NCBI_Gene:329633,ENSEMBL:ENSMUSG00000102679	MGI:5295664	lncRNA gene	predicted gene, 20557
3	pseudogene	49.38115	49.38285	negative	MGI_C57BL6J_3643624	Gm5846	NCBI_Gene:545519,ENSEMBL:ENSMUSG00000104309	MGI:3643624	pseudogene	predicted gene 5846
3	pseudogene	49.40082	49.46744	negative	MGI_C57BL6J_3780091	Gm9683	NCBI_Gene:676568	MGI:3780091	pseudogene	predicted gene 9683
3	gene	49.49135	49.49148	positive	MGI_C57BL6J_5452257	Gm22480	ENSEMBL:ENSMUSG00000084517	MGI:5452257	snoRNA gene	predicted gene, 22480
3	pseudogene	49.53075	49.53131	positive	MGI_C57BL6J_5610652	Gm37424	ENSEMBL:ENSMUSG00000104437	MGI:5610652	pseudogene	predicted gene, 37424
3	pseudogene	49.60356	49.60388	positive	MGI_C57BL6J_5611489	Gm38261	ENSEMBL:ENSMUSG00000102731	MGI:5611489	pseudogene	predicted gene, 38261
3	pseudogene	49.60423	49.60447	positive	MGI_C57BL6J_5611316	Gm38088	ENSEMBL:ENSMUSG00000103249	MGI:5611316	pseudogene	predicted gene, 38088
3	pseudogene	49.63244	49.63297	negative	MGI_C57BL6J_3780498	Gm2328	NCBI_Gene:100039587,ENSEMBL:ENSMUSG00000104134	MGI:3780498	pseudogene	predicted gene 2328
3	pseudogene	49.64348	49.64413	positive	MGI_C57BL6J_5588900	Gm29741	NCBI_Gene:101055903,ENSEMBL:ENSMUSG00000103568	MGI:5588900	pseudogene	predicted gene, 29741
3	gene	49.65876	49.65887	positive	MGI_C57BL6J_5452873	Gm23096	ENSEMBL:ENSMUSG00000065381	MGI:5452873	snRNA gene	predicted gene, 23096
3	gene	49.74329	49.75738	negative	MGI_C57BL6J_1920423	Pcdh18	NCBI_Gene:73173,ENSEMBL:ENSMUSG00000037892	MGI:1920423	protein coding gene	protocadherin 18
3	pseudogene	49.78043	49.78089	negative	MGI_C57BL6J_5610778	Gm37550	ENSEMBL:ENSMUSG00000102943	MGI:5610778	pseudogene	predicted gene, 37550
3	gene	49.89253	50.49909	negative	MGI_C57BL6J_1347355	Slc7a11	NCBI_Gene:26570,ENSEMBL:ENSMUSG00000027737	MGI:1347355	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
3	gene	50.00197	50.01078	positive	MGI_C57BL6J_5611082	Gm37854	ENSEMBL:ENSMUSG00000102892	MGI:5611082	lncRNA gene	predicted gene, 37854
3	gene	50.01177	50.02624	negative	MGI_C57BL6J_5622927	Gm40042	NCBI_Gene:105244434	MGI:5622927	lncRNA gene	predicted gene, 40042
3	pseudogene	50.02967	50.02999	positive	MGI_C57BL6J_5611054	Gm37826	ENSEMBL:ENSMUSG00000104457	MGI:5611054	pseudogene	predicted gene, 37826
3	pseudogene	50.16666	50.16689	negative	MGI_C57BL6J_5610920	Gm37692	ENSEMBL:ENSMUSG00000104349	MGI:5610920	pseudogene	predicted gene, 37692
3	pseudogene	50.25485	50.25544	positive	MGI_C57BL6J_3780515	Gm2345	NCBI_Gene:100039628,ENSEMBL:ENSMUSG00000102167	MGI:3780515	pseudogene	predicted gene 2345
3	gene	50.40028	50.40428	negative	MGI_C57BL6J_5610726	Gm37498	ENSEMBL:ENSMUSG00000103907	MGI:5610726	unclassified gene	predicted gene, 37498
3	gene	50.51640	50.60731	negative	MGI_C57BL6J_3643374	Gm6209	NCBI_Gene:621304,ENSEMBL:ENSMUSG00000102715	MGI:3643374	lncRNA gene	predicted gene 6209
3	gene	50.57519	50.57652	negative	MGI_C57BL6J_1923259	5830415G21Rik	ENSEMBL:ENSMUSG00000102895	MGI:1923259	unclassified gene	RIKEN cDNA 5830415G21 gene
3	pseudogene	50.59799	50.59850	negative	MGI_C57BL6J_5611465	Gm38237	NCBI_Gene:108168851,ENSEMBL:ENSMUSG00000103745	MGI:5611465	pseudogene	predicted gene, 38237
3	gene	50.62435	50.62841	negative	MGI_C57BL6J_5610427	Gm37199	ENSEMBL:ENSMUSG00000104068	MGI:5610427	unclassified gene	predicted gene, 37199
3	gene	50.67970	50.68340	negative	MGI_C57BL6J_5610689	Gm37461	ENSEMBL:ENSMUSG00000104281	MGI:5610689	unclassified gene	predicted gene, 37461
3	gene	50.70690	50.71189	negative	MGI_C57BL6J_5622928	Gm40043	NCBI_Gene:105244435	MGI:5622928	lncRNA gene	predicted gene, 40043
3	gene	50.83858	50.83872	negative	MGI_C57BL6J_5454280	Gm24503	ENSEMBL:ENSMUSG00000089079	MGI:5454280	snoRNA gene	predicted gene, 24503
3	gene	50.88324	50.88889	negative	MGI_C57BL6J_5610776	Gm37548	NCBI_Gene:105244436,ENSEMBL:ENSMUSG00000103012	MGI:5610776	lncRNA gene	predicted gene, 37548
3	gene	50.91889	50.92153	negative	MGI_C57BL6J_5611071	Gm37843	ENSEMBL:ENSMUSG00000102614	MGI:5611071	unclassified gene	predicted gene, 37843
3	gene	50.96656	50.96677	positive	MGI_C57BL6J_2139603	AA672641	NA	NA	unclassified gene	expressed sequence AA672641
3	gene	50.97754	50.97881	negative	MGI_C57BL6J_5610437	Gm37209	ENSEMBL:ENSMUSG00000103652	MGI:5610437	unclassified gene	predicted gene, 37209
3	gene	51.03335	51.04284	negative	MGI_C57BL6J_5594915	Gm35756	NCBI_Gene:102639442	MGI:5594915	lncRNA gene	predicted gene, 35756
3	gene	51.05891	51.08934	negative	MGI_C57BL6J_5579936	Gm29230	NCBI_Gene:102639521,ENSEMBL:ENSMUSG00000102067	MGI:5579936	lncRNA gene	predicted gene 29230
3	gene	51.10366	51.10517	positive	MGI_C57BL6J_5611474	Gm38246	ENSEMBL:ENSMUSG00000103464	MGI:5611474	lncRNA gene	predicted gene, 38246
3	gene	51.12669	51.12894	negative	MGI_C57BL6J_5595050	Gm35891	NCBI_Gene:102639626	MGI:5595050	lncRNA gene	predicted gene, 35891
3	gene	51.21847	51.22033	negative	MGI_C57BL6J_5622929	Gm40044	NCBI_Gene:105244437	MGI:5622929	lncRNA gene	predicted gene, 40044
3	gene	51.22445	51.25165	positive	MGI_C57BL6J_109382	Noct	NCBI_Gene:12457,ENSEMBL:ENSMUSG00000023087	MGI:109382	protein coding gene	nocturnin
3	gene	51.23192	51.23438	positive	MGI_C57BL6J_5611585	Gm38357	ENSEMBL:ENSMUSG00000103313	MGI:5611585	unclassified gene	predicted gene, 38357
3	gene	51.25272	51.34092	negative	MGI_C57BL6J_1916507	Elf2	NCBI_Gene:69257,ENSEMBL:ENSMUSG00000037174	MGI:1916507	protein coding gene	E74-like factor 2
3	gene	51.27676	51.27841	positive	MGI_C57BL6J_1914996	4930577N17Rik	NCBI_Gene:67746,ENSEMBL:ENSMUSG00000087440	MGI:1914996	lncRNA gene	RIKEN cDNA 4930577N17 gene
3	gene	51.29718	51.29724	positive	MGI_C57BL6J_5454059	Gm24282	ENSEMBL:ENSMUSG00000077420	MGI:5454059	miRNA gene	predicted gene, 24282
3	gene	51.30249	51.30290	negative	MGI_C57BL6J_5610627	Gm37399	ENSEMBL:ENSMUSG00000104200	MGI:5610627	unclassified gene	predicted gene, 37399
3	gene	51.35835	51.35842	positive	MGI_C57BL6J_4414019	n-TPtgg7	NCBI_Gene:102467437	MGI:4414019	tRNA gene	nuclear encoded tRNA proline 7 (anticodon TGG)
3	gene	51.35941	51.35948	positive	MGI_C57BL6J_4414007	n-TPagg5	NCBI_Gene:102467366	MGI:4414007	tRNA gene	nuclear encoded tRNA proline 5 (anticodon AGG)
3	pseudogene	51.37022	51.37061	positive	MGI_C57BL6J_5610431	Gm37203	ENSEMBL:ENSMUSG00000103654	MGI:5610431	pseudogene	predicted gene, 37203
3	gene	51.37802	51.38632	positive	MGI_C57BL6J_3779459	Gm5103	NCBI_Gene:329636,ENSEMBL:ENSMUSG00000102544	MGI:3779459	lncRNA gene	predicted gene 5103
3	gene	51.38841	51.39674	negative	MGI_C57BL6J_1914999	Mgarp	NCBI_Gene:67749,ENSEMBL:ENSMUSG00000037161	MGI:1914999	protein coding gene	mitochondria localized glutamic acid rich protein
3	pseudogene	51.40246	51.40320	negative	MGI_C57BL6J_3779852	Gm9442	NCBI_Gene:669130,ENSEMBL:ENSMUSG00000104241	MGI:3779852	pseudogene	predicted gene 9442
3	gene	51.40468	51.40899	negative	MGI_C57BL6J_1913627	Ndufc1	NCBI_Gene:66377,ENSEMBL:ENSMUSG00000037152	MGI:1913627	protein coding gene	NADH:ubiquinone oxidoreductase subunit C1
3	gene	51.41515	51.47651	positive	MGI_C57BL6J_1922088	Naa15	NCBI_Gene:74838,ENSEMBL:ENSMUSG00000063273	MGI:1922088	protein coding gene	N(alpha)-acetyltransferase 15, NatA auxiliary subunit
3	gene	51.42361	51.42372	positive	MGI_C57BL6J_5610874	Gm37646	ENSEMBL:ENSMUSG00000103191	MGI:5610874	unclassified gene	predicted gene, 37646
3	gene	51.48233	51.48483	negative	MGI_C57BL6J_5611388	Gm38160	ENSEMBL:ENSMUSG00000102775	MGI:5611388	unclassified gene	predicted gene, 38160
3	gene	51.48392	51.49623	positive	MGI_C57BL6J_1330805	Rab33b	NCBI_Gene:19338,ENSEMBL:ENSMUSG00000027739	MGI:1330805	protein coding gene	RAB33B, member RAS oncogene family
3	gene	51.48962	51.49282	positive	MGI_C57BL6J_5611196	Gm37968	ENSEMBL:ENSMUSG00000102570	MGI:5611196	unclassified gene	predicted gene, 37968
3	gene	51.51099	51.51430	positive	MGI_C57BL6J_5595167	Gm36008	NCBI_Gene:102639777	MGI:5595167	lncRNA gene	predicted gene, 36008
3	gene	51.51532	51.56088	negative	MGI_C57BL6J_1920501	Setd7	NCBI_Gene:73251,ENSEMBL:ENSMUSG00000037111	MGI:1920501	protein coding gene	SET domain containing (lysine methyltransferase) 7
3	gene	51.55754	51.55965	negative	MGI_C57BL6J_5611428	Gm38200	ENSEMBL:ENSMUSG00000102466	MGI:5611428	unclassified gene	predicted gene, 38200
3	gene	51.55976	51.56712	positive	MGI_C57BL6J_1923230	5031434O11Rik	NCBI_Gene:100039684,ENSEMBL:ENSMUSG00000097885	MGI:1923230	lncRNA gene	RIKEN cDNA 5031434O11 gene
3	pseudogene	51.57111	51.57142	negative	MGI_C57BL6J_5611562	Gm38334	ENSEMBL:ENSMUSG00000104001	MGI:5611562	pseudogene	predicted gene, 38334
3	gene	51.58231	51.58285	positive	MGI_C57BL6J_1918620	5430433H01Rik	ENSEMBL:ENSMUSG00000104075	MGI:1918620	unclassified gene	RIKEN cDNA 5430433H01 gene
3	pseudogene	51.63649	51.63705	negative	MGI_C57BL6J_5611475	Gm38247	NCBI_Gene:108168852,ENSEMBL:ENSMUSG00000104166	MGI:5611475	pseudogene	predicted gene, 38247
3	gene	51.66036	51.68268	positive	MGI_C57BL6J_2448481	Mgst2	NCBI_Gene:211666,ENSEMBL:ENSMUSG00000074604	MGI:2448481	protein coding gene	microsomal glutathione S-transferase 2
3	gene	51.67280	51.67390	positive	MGI_C57BL6J_5610489	Gm37261	ENSEMBL:ENSMUSG00000103527	MGI:5610489	unclassified gene	predicted gene, 37261
3	gene	51.68591	52.10509	negative	MGI_C57BL6J_2389461	Maml3	NCBI_Gene:433586,ENSEMBL:ENSMUSG00000061143	MGI:2389461	protein coding gene	mastermind like transcriptional coactivator 3
3	gene	51.69372	51.69509	positive	MGI_C57BL6J_3642905	Gm10729	ENSEMBL:ENSMUSG00000074603	MGI:3642905	protein coding gene	predicted gene 10729
3	gene	51.70772	51.71225	positive	MGI_C57BL6J_5826440	Gm46803	NCBI_Gene:108168869	MGI:5826440	lncRNA gene	predicted gene, 46803
3	gene	51.75712	51.76209	negative	MGI_C57BL6J_5610570	Gm37342	ENSEMBL:ENSMUSG00000102732	MGI:5610570	unclassified gene	predicted gene, 37342
3	gene	51.81295	51.81931	positive	MGI_C57BL6J_5610457	Gm37229	ENSEMBL:ENSMUSG00000102539	MGI:5610457	lncRNA gene	predicted gene, 37229
3	gene	51.82891	51.82903	positive	MGI_C57BL6J_4422061	n-R5s196	ENSEMBL:ENSMUSG00000065070	MGI:4422061	rRNA gene	nuclear encoded rRNA 5S 196
3	gene	51.82939	51.83040	negative	MGI_C57BL6J_1920491	3110080O07Rik	ENSEMBL:ENSMUSG00000103284	MGI:1920491	unclassified gene	RIKEN cDNA 3110080O07 gene
3	gene	51.86735	51.86856	negative	MGI_C57BL6J_5611228	Gm38000	ENSEMBL:ENSMUSG00000103484	MGI:5611228	unclassified gene	predicted gene, 38000
3	gene	51.87299	51.87584	negative	MGI_C57BL6J_5610903	Gm37675	ENSEMBL:ENSMUSG00000102620	MGI:5610903	unclassified gene	predicted gene, 37675
3	gene	51.88428	51.88689	negative	MGI_C57BL6J_5611480	Gm38252	ENSEMBL:ENSMUSG00000102786	MGI:5611480	unclassified gene	predicted gene, 38252
3	pseudogene	51.90699	51.90882	negative	MGI_C57BL6J_3708672	Gm10728	ENSEMBL:ENSMUSG00000103701	MGI:3708672	pseudogene	predicted gene 10728
3	gene	51.98094	51.99007	positive	MGI_C57BL6J_5012274	Gm20089	ENSEMBL:ENSMUSG00000104161	MGI:5012274	lncRNA gene	predicted gene, 20089
3	gene	51.98763	51.98985	negative	MGI_C57BL6J_5611283	Gm38055	ENSEMBL:ENSMUSG00000102147	MGI:5611283	unclassified gene	predicted gene, 38055
3	gene	51.99134	51.99196	negative	MGI_C57BL6J_5610754	Gm37526	ENSEMBL:ENSMUSG00000103784	MGI:5610754	unclassified gene	predicted gene, 37526
3	gene	52.00074	52.00402	negative	MGI_C57BL6J_5610693	Gm37465	ENSEMBL:ENSMUSG00000102423	MGI:5610693	unclassified gene	predicted gene, 37465
3	gene	52.05729	52.06424	negative	MGI_C57BL6J_2444420	C130089K02Rik	ENSEMBL:ENSMUSG00000104339	MGI:2444420	unclassified gene	RIKEN cDNA C130089K02 gene
3	gene	52.07159	52.07339	negative	MGI_C57BL6J_1921741	5430420F09Rik	ENSEMBL:ENSMUSG00000102808	MGI:1921741	unclassified gene	RIKEN cDNA 5430420F09 gene
3	gene	52.13405	52.22200	negative	MGI_C57BL6J_5610430	Gm37202	ENSEMBL:ENSMUSG00000103655	MGI:5610430	lncRNA gene	predicted gene, 37202
3	gene	52.17108	52.18013	negative	MGI_C57BL6J_5589233	Gm30074	NCBI_Gene:102631843,ENSEMBL:ENSMUSG00000103726	MGI:5589233	lncRNA gene	predicted gene, 30074
3	gene	52.18657	52.18796	positive	MGI_C57BL6J_5611360	Gm38132	ENSEMBL:ENSMUSG00000104055	MGI:5611360	lncRNA gene	predicted gene, 38132
3	gene	52.19825	52.20049	positive	MGI_C57BL6J_5610398	Gm37170	ENSEMBL:ENSMUSG00000103170	MGI:5610398	lncRNA gene	predicted gene, 37170
3	pseudogene	52.23684	52.24694	negative	MGI_C57BL6J_3031232	Olfr1398-ps1	NCBI_Gene:404507,ENSEMBL:ENSMUSG00000102510	MGI:3031232	pseudogene	olfactory receptor 1398, pseudogene 1
3	gene	52.23745	52.25650	positive	MGI_C57BL6J_5589284	Gm30125	NCBI_Gene:102631910	MGI:5589284	lncRNA gene	predicted gene, 30125
3	gene	52.26834	52.35322	positive	MGI_C57BL6J_1890077	Foxo1	NCBI_Gene:56458,ENSEMBL:ENSMUSG00000044167	MGI:1890077	protein coding gene	forkhead box O1
3	gene	52.26843	52.26944	negative	MGI_C57BL6J_5141867	Gm20402	ENSEMBL:ENSMUSG00000092405	MGI:5141867	lncRNA gene	predicted gene 20402
3	gene	52.28224	52.28431	positive	MGI_C57BL6J_5611262	Gm38034	ENSEMBL:ENSMUSG00000102844	MGI:5611262	unclassified gene	predicted gene, 38034
3	pseudogene	52.42535	52.42573	positive	MGI_C57BL6J_5593462	Gm34303	NCBI_Gene:102637513	MGI:5593462	pseudogene	predicted gene, 34303
3	pseudogene	52.42541	52.42565	positive	MGI_C57BL6J_5611326	Gm38098	ENSEMBL:ENSMUSG00000103454	MGI:5611326	pseudogene	predicted gene, 38098
3	gene	52.46717	52.49327	positive	MGI_C57BL6J_5621422	Gm38537	NCBI_Gene:102641152	MGI:5621422	lncRNA gene	predicted gene, 38537
3	gene	52.50277	52.55022	positive	MGI_C57BL6J_5589332	Gm30173	NCBI_Gene:102631981,ENSEMBL:ENSMUSG00000103965	MGI:5589332	lncRNA gene	predicted gene, 30173
3	gene	52.58013	52.58907	positive	MGI_C57BL6J_5622932	Gm40047	NCBI_Gene:105244440	MGI:5622932	lncRNA gene	predicted gene, 40047
3	pseudogene	52.61282	52.61402	positive	MGI_C57BL6J_3704216	Gm10293	NCBI_Gene:100039762,ENSEMBL:ENSMUSG00000070490	MGI:3704216	pseudogene	predicted pseudogene 10293
3	gene	52.64989	52.70971	positive	MGI_C57BL6J_5589394	Gm30235	NCBI_Gene:102632062	MGI:5589394	lncRNA gene	predicted gene, 30235
3	gene	52.72265	52.72275	negative	MGI_C57BL6J_5452575	Gm22798	ENSEMBL:ENSMUSG00000065926	MGI:5452575	snRNA gene	predicted gene, 22798
3	gene	52.73972	52.77666	positive	MGI_C57BL6J_3780614	Gm2447	NCBI_Gene:329639,ENSEMBL:ENSMUSG00000102785	MGI:3780614	lncRNA gene	predicted gene 2447
3	gene	52.78900	52.79781	negative	MGI_C57BL6J_5589451	Gm30292	NCBI_Gene:102632139,ENSEMBL:ENSMUSG00000104109	MGI:5589451	lncRNA gene	predicted gene, 30292
3	gene	52.90676	52.92767	negative	MGI_C57BL6J_5434106	Gm20750	NCBI_Gene:622124,ENSEMBL:ENSMUSG00000104401	MGI:5434106	lncRNA gene	predicted gene, 20750
3	gene	52.93325	52.95628	positive	MGI_C57BL6J_5589510	Gm30351	NCBI_Gene:102632211	MGI:5589510	lncRNA gene	predicted gene, 30351
3	gene	52.95618	52.95789	negative	MGI_C57BL6J_5589561	Gm30402	NCBI_Gene:102632287	MGI:5589561	lncRNA gene	predicted gene, 30402
3	pseudogene	52.96005	52.96037	negative	MGI_C57BL6J_5610235	Gm37007	ENSEMBL:ENSMUSG00000103886	MGI:5610235	pseudogene	predicted gene, 37007
3	gene	52.98188	53.01724	negative	MGI_C57BL6J_1914792	Cog6	NCBI_Gene:67542,ENSEMBL:ENSMUSG00000027742	MGI:1914792	protein coding gene	component of oligomeric golgi complex 6
3	gene	53.03858	53.04176	negative	MGI_C57BL6J_5663038	Gm42901	ENSEMBL:ENSMUSG00000104850	MGI:5663038	lncRNA gene	predicted gene 42901
3	gene	53.04153	53.26168	positive	MGI_C57BL6J_1920048	Lhfp	NCBI_Gene:108927,ENSEMBL:ENSMUSG00000048332	MGI:1920048	protein coding gene	lipoma HMGIC fusion partner
3	gene	53.07216	53.07524	negative	MGI_C57BL6J_5663035	Gm42898	ENSEMBL:ENSMUSG00000104828	MGI:5663035	unclassified gene	predicted gene 42898
3	gene	53.08322	53.08588	positive	MGI_C57BL6J_5663036	Gm42899	ENSEMBL:ENSMUSG00000104687	MGI:5663036	unclassified gene	predicted gene 42899
3	gene	53.09900	53.10318	positive	MGI_C57BL6J_2443940	C130075A20Rik	ENSEMBL:ENSMUSG00000104735	MGI:2443940	unclassified gene	RIKEN cDNA C130075A20 gene
3	gene	53.10967	53.11012	positive	MGI_C57BL6J_5663941	Gm43804	ENSEMBL:ENSMUSG00000104615	MGI:5663941	unclassified gene	predicted gene 43804
3	gene	53.11040	53.11341	negative	MGI_C57BL6J_5663940	Gm43803	ENSEMBL:ENSMUSG00000104968	MGI:5663940	lncRNA gene	predicted gene 43803
3	gene	53.11217	53.11299	positive	MGI_C57BL6J_5663942	Gm43805	ENSEMBL:ENSMUSG00000105971	MGI:5663942	unclassified gene	predicted gene 43805
3	pseudogene	53.34649	53.34723	negative	MGI_C57BL6J_5663609	Gm43472	ENSEMBL:ENSMUSG00000106660	MGI:5663609	pseudogene	predicted gene 43472
3	gene	53.39575	53.39850	positive	MGI_C57BL6J_5622933	Gm40048	NCBI_Gene:105244441	MGI:5622933	lncRNA gene	predicted gene, 40048
3	pseudogene	53.40161	53.42457	negative	MGI_C57BL6J_5663608	Gm43471	NCBI_Gene:108168853,ENSEMBL:ENSMUSG00000105397	MGI:5663608	pseudogene	predicted gene 43471
3	gene	53.44858	53.46333	negative	MGI_C57BL6J_2444520	Nhlrc3	NCBI_Gene:212114,ENSEMBL:ENSMUSG00000042997	MGI:2444520	protein coding gene	NHL repeat containing 3
3	gene	53.45262	53.45805	positive	MGI_C57BL6J_3801870	Gm16206	NCBI_Gene:102632669,ENSEMBL:ENSMUSG00000085174	MGI:3801870	lncRNA gene	predicted gene 16206
3	gene	53.46367	53.48175	positive	MGI_C57BL6J_1919933	Proser1	NCBI_Gene:212127,ENSEMBL:ENSMUSG00000049504	MGI:1919933	protein coding gene	proline and serine rich 1
3	gene	53.48865	53.50850	positive	MGI_C57BL6J_2388072	Stoml3	NCBI_Gene:229277,ENSEMBL:ENSMUSG00000027744	MGI:2388072	protein coding gene	stomatin (Epb7.2)-like 3
3	gene	53.50893	53.51010	positive	MGI_C57BL6J_1924132	6430500D05Rik	ENSEMBL:ENSMUSG00000105481	MGI:1924132	unclassified gene	RIKEN cDNA 6430500D05 gene
3	gene	53.51200	53.51213	positive	MGI_C57BL6J_5453452	Gm23675	ENSEMBL:ENSMUSG00000087936	MGI:5453452	snoRNA gene	predicted gene, 23675
3	gene	53.51394	53.65736	negative	MGI_C57BL6J_2444465	Frem2	NCBI_Gene:242022,ENSEMBL:ENSMUSG00000037016	MGI:2444465	protein coding gene	Fras1 related extracellular matrix protein 2
3	pseudogene	53.66666	53.66739	negative	MGI_C57BL6J_3648425	Gm6073	NCBI_Gene:606547,ENSEMBL:ENSMUSG00000105840	MGI:3648425	pseudogene	predicted gene 6073
3	pseudogene	53.69237	53.69292	negative	MGI_C57BL6J_3649038	Gm6204	NCBI_Gene:621155,ENSEMBL:ENSMUSG00000105879	MGI:3649038	pseudogene	predicted gene 6204
3	gene	53.70304	53.73576	positive	MGI_C57BL6J_5589894	Gm30735	NCBI_Gene:102632743,ENSEMBL:ENSMUSG00000105168	MGI:5589894	lncRNA gene	predicted gene, 30735
3	gene	53.73622	53.73783	positive	MGI_C57BL6J_3642187	Gm10727	ENSEMBL:ENSMUSG00000105444	MGI:3642187	unclassified gene	predicted gene 10727
3	gene	53.75673	53.77295	positive	MGI_C57BL6J_2443105	C820005J03Rik	ENSEMBL:ENSMUSG00000106270	MGI:2443105	lncRNA gene	RIKEN cDNA C820005J03 gene
3	gene	53.84341	53.84351	positive	MGI_C57BL6J_5454628	Gm24851	ENSEMBL:ENSMUSG00000088653	MGI:5454628	snRNA gene	predicted gene, 24851
3	gene	53.84509	53.84528	positive	MGI_C57BL6J_3779200	Gm10985	ENSEMBL:ENSMUSG00000078742	MGI:3779200	protein coding gene	predicted gene 10985
3	gene	53.85338	53.86383	negative	MGI_C57BL6J_1915140	Ufm1	NCBI_Gene:67890,ENSEMBL:ENSMUSG00000027746	MGI:1915140	protein coding gene	ubiquitin-fold modifier 1
3	gene	53.92484	53.94353	positive	MGI_C57BL6J_5590185	Gm31026	NCBI_Gene:102633119,ENSEMBL:ENSMUSG00000106577	MGI:5590185	lncRNA gene	predicted gene, 31026
3	pseudogene	54.02115	54.02195	positive	MGI_C57BL6J_3645533	Gm8109	NCBI_Gene:666444,ENSEMBL:ENSMUSG00000103155	MGI:3645533	pseudogene	predicted gene 8109
3	pseudogene	54.02988	54.03041	positive	MGI_C57BL6J_5010203	Gm18018	NCBI_Gene:100416282,ENSEMBL:ENSMUSG00000105067	MGI:5010203	pseudogene	predicted gene, 18018
3	gene	54.15604	54.31847	positive	MGI_C57BL6J_109525	Trpc4	NCBI_Gene:22066,ENSEMBL:ENSMUSG00000027748	MGI:109525	protein coding gene	transient receptor potential cation channel, subfamily C, member 4
3	gene	54.35927	54.39104	positive	MGI_C57BL6J_1926321	Postn	NCBI_Gene:50706,ENSEMBL:ENSMUSG00000027750	MGI:1926321	protein coding gene	periostin, osteoblast specific factor
3	gene	54.35966	54.36101	negative	MGI_C57BL6J_5590254	Gm31095	NCBI_Gene:102633208	MGI:5590254	lncRNA gene	predicted gene, 31095
3	pseudogene	54.48141	54.48293	positive	MGI_C57BL6J_3645731	Gm5641	NCBI_Gene:434807,ENSEMBL:ENSMUSG00000069014	MGI:3645731	pseudogene	predicted gene 5641
3	gene	54.48856	54.53489	negative	MGI_C57BL6J_5590313	Gm31154	NCBI_Gene:102633293	MGI:5590313	lncRNA gene	predicted gene, 31154
3	gene	54.59055	54.60139	negative	MGI_C57BL6J_5622935	Gm40050	NCBI_Gene:105244443	MGI:5622935	lncRNA gene	predicted gene, 40050
3	gene	54.63144	54.63463	positive	MGI_C57BL6J_5477172	Gm26678	ENSEMBL:ENSMUSG00000097599	MGI:5477172	lncRNA gene	predicted gene, 26678
3	pseudogene	54.63288	54.63457	negative	MGI_C57BL6J_3588285	B020017C02Rik	NCBI_Gene:100503708,ENSEMBL:ENSMUSG00000104831	MGI:3588285	pseudogene	RIKEN cDNA B020017C02 gene
3	gene	54.69276	54.72877	positive	MGI_C57BL6J_1929651	Supt20	NCBI_Gene:56790,ENSEMBL:ENSMUSG00000027751	MGI:1929651	protein coding gene	SPT20 SAGA complex component
3	gene	54.71318	54.71435	negative	MGI_C57BL6J_5439427	Gm21958	ENSEMBL:ENSMUSG00000094487	MGI:5439427	protein coding gene	predicted gene, 21958
3	gene	54.72868	54.73539	negative	MGI_C57BL6J_1916889	Exosc8	NCBI_Gene:69639,ENSEMBL:ENSMUSG00000027752	MGI:1916889	protein coding gene	exosome component 8
3	gene	54.73554	54.75132	positive	MGI_C57BL6J_1913498	Alg5	NCBI_Gene:66248,ENSEMBL:ENSMUSG00000036632	MGI:1913498	protein coding gene	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
3	gene	54.75545	54.80166	positive	MGI_C57BL6J_1859993	Smad9	NCBI_Gene:55994,ENSEMBL:ENSMUSG00000027796	MGI:1859993	protein coding gene	SMAD family member 9
3	gene	54.80311	54.80779	negative	MGI_C57BL6J_2180854	Rfxap	NCBI_Gene:170767,ENSEMBL:ENSMUSG00000036615	MGI:2180854	protein coding gene	regulatory factor X-associated protein
3	pseudogene	54.80997	54.81140	negative	MGI_C57BL6J_3708673	Gm10254	NCBI_Gene:545524,ENSEMBL:ENSMUSG00000069011	MGI:3708673	pseudogene	predicted gene 10254
3	gene	54.89707	54.91589	negative	MGI_C57BL6J_3607715	Sertm1	NCBI_Gene:329641,ENSEMBL:ENSMUSG00000056306	MGI:3607715	protein coding gene	serine rich and transmembrane domain containing 1
3	gene	54.91602	54.95326	positive	MGI_C57BL6J_5590517	Gm31358	NCBI_Gene:102633562	MGI:5590517	lncRNA gene	predicted gene, 31358
3	gene	55.04547	55.05550	negative	MGI_C57BL6J_108042	Ccna1	NCBI_Gene:12427,ENSEMBL:ENSMUSG00000027793	MGI:108042	protein coding gene	cyclin A1
3	gene	55.05524	55.08400	positive	MGI_C57BL6J_1918220	4931419H13Rik	NCBI_Gene:70970,ENSEMBL:ENSMUSG00000106589	MGI:1918220	lncRNA gene	RIKEN cDNA 4931419H13 gene
3	pseudogene	55.05735	55.05766	negative	MGI_C57BL6J_5663692	Gm43555	ENSEMBL:ENSMUSG00000105977	MGI:5663692	pseudogene	predicted gene 43555
3	gene	55.11207	55.13733	positive	MGI_C57BL6J_2139806	Spg20	NCBI_Gene:229285,ENSEMBL:ENSMUSG00000036580	MGI:2139806	protein coding gene	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
3	gene	55.13734	55.17525	positive	MGI_C57BL6J_2444356	Ccdc169	NCBI_Gene:320604,ENSEMBL:ENSMUSG00000048655	MGI:2444356	protein coding gene	coiled-coil domain containing 169
3	gene	55.16231	55.16243	negative	MGI_C57BL6J_5451806	Gm22029	ENSEMBL:ENSMUSG00000080590	MGI:5451806	miRNA gene	predicted gene, 22029
3	gene	55.18203	55.20996	positive	MGI_C57BL6J_1921684	Sohlh2	NCBI_Gene:74434,ENSEMBL:ENSMUSG00000027794	MGI:1921684	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 2
3	gene	55.24236	55.53907	positive	MGI_C57BL6J_1330861	Dclk1	NCBI_Gene:13175,ENSEMBL:ENSMUSG00000027797	MGI:1330861	protein coding gene	doublecortin-like kinase 1
3	gene	55.29094	55.29194	positive	MGI_C57BL6J_1924494	9430012M22Rik	NA	NA	unclassified gene	RIKEN cDNA 9430012M22 gene
3	gene	55.30532	55.30542	positive	MGI_C57BL6J_5454909	Gm25132	ENSEMBL:ENSMUSG00000064586	MGI:5454909	snRNA gene	predicted gene, 25132
3	gene	55.33084	55.33297	positive	MGI_C57BL6J_5012002	Gm19817	ENSEMBL:ENSMUSG00000105302	MGI:5012002	unclassified gene	predicted gene, 19817
3	gene	55.35240	55.38079	negative	MGI_C57BL6J_5622936	Gm40051	NCBI_Gene:105244444	MGI:5622936	lncRNA gene	predicted gene, 40051
3	gene	55.37746	55.40312	negative	MGI_C57BL6J_5662746	Gm42609	ENSEMBL:ENSMUSG00000105975	MGI:5662746	lncRNA gene	predicted gene 42609
3	gene	55.39181	55.40420	negative	MGI_C57BL6J_3642047	Gm9831	NCBI_Gene:101056032	MGI:3642047	protein coding gene	predicted gene 9831
3	gene	55.46198	55.47221	negative	MGI_C57BL6J_5439423	Gm21954	ENSEMBL:ENSMUSG00000094962	MGI:5439423	protein coding gene	predicted gene, 21954
3	gene	55.47609	55.48162	negative	MGI_C57BL6J_5590602	Gm31443	NCBI_Gene:102633676	MGI:5590602	lncRNA gene	predicted gene, 31443
3	gene	55.48379	55.48718	positive	MGI_C57BL6J_5662744	Gm42607	ENSEMBL:ENSMUSG00000106354	MGI:5662744	unclassified gene	predicted gene 42607
3	gene	55.51757	55.51959	positive	MGI_C57BL6J_5662745	Gm42608	ENSEMBL:ENSMUSG00000106651	MGI:5662745	unclassified gene	predicted gene 42608
3	gene	55.54045	55.54338	negative	MGI_C57BL6J_5590955	Gm31796	NCBI_Gene:102634140	MGI:5590955	lncRNA gene	predicted gene, 31796
3	gene	55.54354	55.54855	positive	MGI_C57BL6J_5455181	Gm25404	NCBI_Gene:102634218,ENSEMBL:ENSMUSG00000064904	MGI:5455181	snRNA gene	predicted gene, 25404
3	gene	55.57492	55.57727	positive	MGI_C57BL6J_5663685	Gm43548	ENSEMBL:ENSMUSG00000105627	MGI:5663685	unclassified gene	predicted gene 43548
3	gene	55.57811	55.58273	negative	MGI_C57BL6J_5663686	Gm43549	NCBI_Gene:108168870,ENSEMBL:ENSMUSG00000106334	MGI:5663686	lncRNA gene	predicted gene 43549
3	gene	55.62519	56.18427	negative	MGI_C57BL6J_1347075	Nbea	NCBI_Gene:26422,ENSEMBL:ENSMUSG00000027799	MGI:1347075	protein coding gene	neurobeachin
3	gene	55.70589	55.71565	positive	MGI_C57BL6J_5826441	Gm46804	NCBI_Gene:108168871	MGI:5826441	lncRNA gene	predicted gene, 46804
3	gene	55.72593	55.72844	negative	MGI_C57BL6J_3609650	D430004P15Rik	NA	NA	unclassified gene	Riken cDNA D430004P15 gene
3	gene	55.77534	55.78795	negative	MGI_C57BL6J_3698047	9630024C22Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9630024C22 gene
3	gene	55.78251	55.78529	positive	MGI_C57BL6J_1333773	Mab21l1	NCBI_Gene:17116,ENSEMBL:ENSMUSG00000056947	MGI:1333773	protein coding gene	mab-21-like 1
3	gene	55.83367	55.83446	negative	MGI_C57BL6J_1924979	6720451E02Rik	NA	NA	unclassified gene	RIKEN cDNA 6720451E02 gene
3	pseudogene	55.84710	55.84840	positive	MGI_C57BL6J_1918432	4933417G07Rik	NCBI_Gene:71182,ENSEMBL:ENSMUSG00000106572	MGI:1918432	pseudogene	RIKEN cDNA 4933417G07 gene
3	gene	55.85525	55.85615	negative	MGI_C57BL6J_1926125	B230206L23Rik	NA	NA	unclassified gene	RIKEN cDNA B230206L23 gene
3	gene	55.88327	56.00032	positive	MGI_C57BL6J_5591073	Gm31914	NCBI_Gene:102634293	MGI:5591073	lncRNA gene	predicted gene, 31914
3	gene	55.89031	55.93670	positive	MGI_C57BL6J_5663513	Gm43376	ENSEMBL:ENSMUSG00000104677	MGI:5663513	lncRNA gene	predicted gene 43376
3	gene	55.95678	55.95691	negative	MGI_C57BL6J_5452561	Gm22784	ENSEMBL:ENSMUSG00000077276	MGI:5452561	snoRNA gene	predicted gene, 22784
3	gene	56.01492	56.01717	negative	MGI_C57BL6J_5662977	Gm42840	ENSEMBL:ENSMUSG00000104938	MGI:5662977	unclassified gene	predicted gene 42840
3	gene	56.12316	56.12616	negative	MGI_C57BL6J_5662979	Gm42842	ENSEMBL:ENSMUSG00000106211	MGI:5662979	unclassified gene	predicted gene 42842
3	gene	56.12860	56.13053	negative	MGI_C57BL6J_5662978	Gm42841	ENSEMBL:ENSMUSG00000106528	MGI:5662978	unclassified gene	predicted gene 42841
3	gene	56.16395	56.16757	negative	MGI_C57BL6J_5662980	Gm42843	ENSEMBL:ENSMUSG00000105293	MGI:5662980	unclassified gene	predicted gene 42843
3	gene	56.21791	56.22124	negative	MGI_C57BL6J_5622937	Gm40052	NCBI_Gene:105244445	MGI:5622937	lncRNA gene	predicted gene, 40052
3	gene	56.25590	56.26994	negative	MGI_C57BL6J_5622938	Gm40053	NCBI_Gene:105244446	MGI:5622938	lncRNA gene	predicted gene, 40053
3	gene	56.34703	56.35755	negative	MGI_C57BL6J_5622939	Gm40054	NCBI_Gene:105244447	MGI:5622939	lncRNA gene	predicted gene, 40054
3	gene	56.35224	56.35230	positive	MGI_C57BL6J_102792	Mcptl	NA	NA	protein coding gene	mast cell protease-like
3	gene	56.43600	56.43875	negative	MGI_C57BL6J_5591336	Gm32177	NCBI_Gene:102634641	MGI:5591336	lncRNA gene	predicted gene, 32177
3	gene	56.44528	56.44541	negative	MGI_C57BL6J_5455504	Gm25727	ENSEMBL:ENSMUSG00000077710	MGI:5455504	snoRNA gene	predicted gene, 25727
3	gene	56.69842	56.70506	positive	MGI_C57BL6J_5591396	Gm32237	NCBI_Gene:102634719	MGI:5591396	lncRNA gene	predicted gene, 32237
3	pseudogene	56.82832	56.82884	negative	MGI_C57BL6J_3780790	Gm2622	NCBI_Gene:100040139,ENSEMBL:ENSMUSG00000105113	MGI:3780790	pseudogene	predicted gene 2622
3	gene	56.88806	56.89133	negative	MGI_C57BL6J_3588185	F830104G03Rik	NA	NA	unclassified gene	RIKEN cDNA F830104G03 gene
3	gene	57.05415	57.05428	positive	MGI_C57BL6J_5452046	Gm22269	ENSEMBL:ENSMUSG00000077190	MGI:5452046	snoRNA gene	predicted gene, 22269
3	pseudogene	57.13549	57.13683	negative	MGI_C57BL6J_3805962	Gm8177	NCBI_Gene:666585,ENSEMBL:ENSMUSG00000097366	MGI:3805962	pseudogene	predicted gene 8177
3	gene	57.22772	57.22918	negative	MGI_C57BL6J_1918389	4933408K01Rik	NA	NA	unclassified gene	RIKEN cDNA 4933408K01 gene
3	pseudogene	57.24925	57.24950	positive	MGI_C57BL6J_5663561	Gm43424	ENSEMBL:ENSMUSG00000106286	MGI:5663561	pseudogene	predicted gene 43424
3	pseudogene	57.27174	57.27237	negative	MGI_C57BL6J_5010845	Gm18660	NCBI_Gene:100417512,ENSEMBL:ENSMUSG00000104534	MGI:5010845	pseudogene	predicted gene, 18660
3	gene	57.28561	57.30199	negative	MGI_C57BL6J_104678	Tm4sf1	NCBI_Gene:17112,ENSEMBL:ENSMUSG00000027800	MGI:104678	protein coding gene	transmembrane 4 superfamily member 1
3	pseudogene	57.36225	57.36361	positive	MGI_C57BL6J_3646382	Gm5276	NCBI_Gene:383862,ENSEMBL:ENSMUSG00000105452	MGI:3646382	pseudogene	predicted gene 5276
3	gene	57.37929	57.39455	negative	MGI_C57BL6J_5591526	Gm32367	NCBI_Gene:102634892	MGI:5591526	lncRNA gene	predicted gene, 32367
3	gene	57.42531	57.44168	positive	MGI_C57BL6J_2385173	Tm4sf4	NCBI_Gene:229302,ENSEMBL:ENSMUSG00000027801	MGI:2385173	protein coding gene	transmembrane 4 superfamily member 4
3	gene	57.45564	57.57591	negative	MGI_C57BL6J_1917649	Wwtr1	NCBI_Gene:97064,ENSEMBL:ENSMUSG00000027803	MGI:1917649	protein coding gene	WW domain containing transcription regulator 1
3	pseudogene	57.52655	57.53048	positive	MGI_C57BL6J_3802068	Gm16016	NCBI_Gene:105244448,ENSEMBL:ENSMUSG00000083538	MGI:3802068	pseudogene	predicted gene 16016
3	gene	57.61259	57.62736	negative	MGI_C57BL6J_5477165	Gm26671	NCBI_Gene:102635136,ENSEMBL:ENSMUSG00000097339	MGI:5477165	lncRNA gene	predicted gene, 26671
3	gene	57.61661	57.61672	positive	MGI_C57BL6J_5530798	Mir6377	miRBase:MI0021907,NCBI_Gene:102465197,ENSEMBL:ENSMUSG00000098401	MGI:5530798	miRNA gene	microRNA 6377
3	gene	57.63688	57.64084	negative	MGI_C57BL6J_5663574	Gm43437	ENSEMBL:ENSMUSG00000104965	MGI:5663574	unclassified gene	predicted gene 43437
3	gene	57.63768	57.64073	positive	MGI_C57BL6J_5826442	Gm46805	NCBI_Gene:108168872	MGI:5826442	lncRNA gene	predicted gene, 46805
3	gene	57.64435	57.65172	negative	MGI_C57BL6J_1098806	Commd2	NCBI_Gene:52245,ENSEMBL:ENSMUSG00000036513	MGI:1098806	protein coding gene	COMM domain containing 2
3	gene	57.65440	57.65558	negative	MGI_C57BL6J_2140033	BB187690	ENSEMBL:ENSMUSG00000105389	MGI:2140033	unclassified gene	expressed sequence BB187690
3	gene	57.65739	57.69280	negative	MGI_C57BL6J_2685256	Ankub1	NCBI_Gene:242037,ENSEMBL:ENSMUSG00000074591	MGI:2685256	protein coding gene	ankrin repeat and ubiquitin domain containing 1
3	gene	57.69618	57.69748	negative	MGI_C57BL6J_5663235	Gm43098	ENSEMBL:ENSMUSG00000106635	MGI:5663235	unclassified gene	predicted gene 43098
3	pseudogene	57.71777	57.71832	negative	MGI_C57BL6J_3648319	Gm6394	NCBI_Gene:623114,ENSEMBL:ENSMUSG00000104623	MGI:3648319	pseudogene	predicted gene 6394
3	gene	57.73604	57.83543	positive	MGI_C57BL6J_1346341	Rnf13	NCBI_Gene:24017,ENSEMBL:ENSMUSG00000036503	MGI:1346341	protein coding gene	ring finger protein 13
3	pseudogene	57.76582	57.76667	negative	MGI_C57BL6J_3780052	Gm9645	NCBI_Gene:675537,ENSEMBL:ENSMUSG00000106421	MGI:3780052	pseudogene	predicted gene 9645
3	pseudogene	57.80976	57.81027	negative	MGI_C57BL6J_5010136	Gm17951	NCBI_Gene:100416165,ENSEMBL:ENSMUSG00000106006	MGI:5010136	pseudogene	predicted gene, 17951
3	gene	57.82159	57.82240	positive	MGI_C57BL6J_1925970	D530035G10Rik	NA	NA	unclassified gene	RIKEN cDNA D530035G10 gene
3	gene	57.84190	57.84808	negative	MGI_C57BL6J_97550	Pfn2	NCBI_Gene:18645,ENSEMBL:ENSMUSG00000027805	MGI:97550	protein coding gene	profilin 2
3	gene	57.92209	57.92219	negative	MGI_C57BL6J_5454308	Gm24531	ENSEMBL:ENSMUSG00000088570	MGI:5454308	snRNA gene	predicted gene, 24531
3	pseudogene	57.94292	57.94315	positive	MGI_C57BL6J_5662648	Gm42511	ENSEMBL:ENSMUSG00000104730	MGI:5662648	pseudogene	predicted gene 42511
3	gene	57.94911	57.97883	positive	MGI_C57BL6J_5591912	Gm32753	NCBI_Gene:102635402	MGI:5591912	lncRNA gene	predicted gene, 32753
3	gene	57.95198	58.03171	negative	MGI_C57BL6J_5622940	Gm40055	NCBI_Gene:105244449,ENSEMBL:ENSMUSG00000105003	MGI:5622940	lncRNA gene	predicted gene, 40055
3	pseudogene	57.96219	57.96337	positive	MGI_C57BL6J_5011052	Gm18867	NCBI_Gene:100417858,ENSEMBL:ENSMUSG00000106246	MGI:5011052	pseudogene	predicted gene, 18867
3	gene	58.07972	58.08183	positive	MGI_C57BL6J_5662650	Gm42513	ENSEMBL:ENSMUSG00000105065	MGI:5662650	unclassified gene	predicted gene 42513
3	gene	58.08960	58.16235	positive	MGI_C57BL6J_5622941	Gm40056	NCBI_Gene:105244450	MGI:5622941	lncRNA gene	predicted gene, 40056
3	pseudogene	58.10256	58.10430	negative	MGI_C57BL6J_3643179	Gm5537	NCBI_Gene:433594,ENSEMBL:ENSMUSG00000069008	MGI:3643179	pseudogene	predicted gene 5537
3	gene	58.11705	58.16762	positive	MGI_C57BL6J_1925506	4921539H07Rik	ENSEMBL:ENSMUSG00000104586	MGI:1925506	lncRNA gene	RIKEN cDNA 4921539H07 gene
3	gene	58.14171	58.16381	negative	MGI_C57BL6J_1915100	1700007F19Rik	NCBI_Gene:67850,ENSEMBL:ENSMUSG00000100666	MGI:1915100	lncRNA gene	RIKEN cDNA 1700007F19 gene
3	gene	58.21192	58.21337	positive	MGI_C57BL6J_5622942	Gm40057	NCBI_Gene:105244451	MGI:5622942	lncRNA gene	predicted gene, 40057
3	gene	58.29025	58.29036	negative	MGI_C57BL6J_5455943	Gm26166	ENSEMBL:ENSMUSG00000065722	MGI:5455943	snRNA gene	predicted gene, 26166
3	gene	58.30186	58.31762	positive	MGI_C57BL6J_5592006	Gm32847	NCBI_Gene:102635539	MGI:5592006	lncRNA gene	predicted gene, 32847
3	pseudogene	58.31494	58.31531	negative	MGI_C57BL6J_5663867	Gm43730	ENSEMBL:ENSMUSG00000106176	MGI:5663867	pseudogene	predicted gene 43730
3	pseudogene	58.40465	58.40512	positive	MGI_C57BL6J_5012313	Gm20128	NCBI_Gene:100504238,ENSEMBL:ENSMUSG00000105154	MGI:5012313	pseudogene	predicted gene, 20128
3	gene	58.41472	58.46679	positive	MGI_C57BL6J_1919283	Tsc22d2	NCBI_Gene:72033,ENSEMBL:ENSMUSG00000027806	MGI:1919283	protein coding gene	TSC22 domain family, member 2
3	gene	58.43268	58.43301	positive	MGI_C57BL6J_1338064	Gdap9	NA	NA	unclassified gene	ganglioside-induced differentiation-associated-protein 9
3	gene	58.51982	58.52589	negative	MGI_C57BL6J_92638	Serp1	NCBI_Gene:28146,ENSEMBL:ENSMUSG00000027808	MGI:92638	protein coding gene	stress-associated endoplasmic reticulum protein 1
3	gene	58.52582	58.55750	positive	MGI_C57BL6J_1098684	Eif2a	NCBI_Gene:229317,ENSEMBL:ENSMUSG00000027810	MGI:1098684	protein coding gene	eukaryotic translation initiation factor 2A
3	gene	58.52693	58.52812	positive	MGI_C57BL6J_1925148	6720482G16Rik	ENSEMBL:ENSMUSG00000106553	MGI:1925148	unclassified gene	RIKEN cDNA 6720482G16 gene
3	gene	58.57664	58.59354	positive	MGI_C57BL6J_1916477	Selenot	NCBI_Gene:69227,ENSEMBL:ENSMUSG00000075700	MGI:1916477	protein coding gene	selenoprotein T
3	gene	58.61630	58.63721	negative	MGI_C57BL6J_3588212	Erich6	NCBI_Gene:545527,ENSEMBL:ENSMUSG00000070471	MGI:3588212	protein coding gene	glutamate rich 6
3	gene	58.63671	58.63749	positive	MGI_C57BL6J_5826443	Gm46806	NCBI_Gene:108168873	MGI:5826443	lncRNA gene	predicted gene, 46806
3	pseudogene	58.65204	58.65404	positive	MGI_C57BL6J_3779790	Gm8234	NCBI_Gene:666680,ENSEMBL:ENSMUSG00000105021	MGI:3779790	pseudogene	predicted gene 8234
3	pseudogene	58.66547	58.66664	negative	MGI_C57BL6J_2139888	AU022133	NCBI_Gene:100417266,ENSEMBL:ENSMUSG00000105336	MGI:2139888	pseudogene	expressed sequence AU022133
3	gene	58.67494	58.69244	negative	MGI_C57BL6J_108062	Siah2	NCBI_Gene:20439,ENSEMBL:ENSMUSG00000036432	MGI:108062	protein coding gene	siah E3 ubiquitin protein ligase 2
3	gene	58.69259	58.79733	positive	MGI_C57BL6J_1923132	4930593A02Rik	NCBI_Gene:71301,ENSEMBL:ENSMUSG00000097725	MGI:1923132	lncRNA gene	RIKEN cDNA 4930593A02 gene
3	gene	58.69756	58.69867	positive	MGI_C57BL6J_1925070	A930028O11Rik	ENSEMBL:ENSMUSG00000105226	MGI:1925070	unclassified gene	RIKEN cDNA A930028O11 gene
3	pseudogene	58.76149	58.76275	negative	MGI_C57BL6J_5592251	Gm33092	NCBI_Gene:102635856	MGI:5592251	pseudogene	predicted gene, 33092
3	pseudogene	58.78841	58.82231	negative	MGI_C57BL6J_2140018	Mindy4b-ps	NCBI_Gene:100040293,ENSEMBL:ENSMUSG00000101860	MGI:2140018	pseudogene	MINDY lysine 48 deubiquitinase 4B, pseudogene
3	gene	58.82499	58.83590	positive	MGI_C57BL6J_5622944	Gm40059	NCBI_Gene:105244453	MGI:5622944	lncRNA gene	predicted gene, 40059
3	gene	58.84210	58.86675	positive	MGI_C57BL6J_5622945	Gm40060	NCBI_Gene:105244454	MGI:5622945	lncRNA gene	predicted gene, 40060
3	gene	58.84403	58.88534	negative	MGI_C57BL6J_2388124	Clrn1	NCBI_Gene:229320,ENSEMBL:ENSMUSG00000043850	MGI:2388124	protein coding gene	clarin 1
3	gene	58.97563	58.97573	positive	MGI_C57BL6J_5452268	Gm22491	ENSEMBL:ENSMUSG00000087815	MGI:5452268	snRNA gene	predicted gene, 22491
3	gene	58.97886	58.97903	negative	MGI_C57BL6J_5455349	Gm25572	ENSEMBL:ENSMUSG00000088152	MGI:5455349	snRNA gene	predicted gene, 25572
3	pseudogene	58.98713	58.98786	positive	MGI_C57BL6J_3642685	Rpl13-ps6	NCBI_Gene:100040416,ENSEMBL:ENSMUSG00000059776	MGI:3642685	pseudogene	ribosomal protein L13, pseudogene 6
3	gene	59.00162	59.00169	positive	MGI_C57BL6J_5531175	Gm27793	ENSEMBL:ENSMUSG00000099052	MGI:5531175	unclassified non-coding RNA gene	predicted gene, 27793
3	gene	59.00247	59.00616	negative	MGI_C57BL6J_5663707	Gm43570	ENSEMBL:ENSMUSG00000105945	MGI:5663707	lncRNA gene	predicted gene 43570
3	gene	59.00559	59.31868	positive	MGI_C57BL6J_2139916	Med12l	NCBI_Gene:329650,ENSEMBL:ENSMUSG00000056476	MGI:2139916	protein coding gene	mediator complex subunit 12-like
3	gene	59.09645	59.10182	negative	MGI_C57BL6J_2442043	Gpr171	NCBI_Gene:229323,ENSEMBL:ENSMUSG00000050075	MGI:2442043	protein coding gene	G protein-coupled receptor 171
3	gene	59.11386	59.15362	negative	MGI_C57BL6J_2155705	P2ry14	NCBI_Gene:140795,ENSEMBL:ENSMUSG00000036381	MGI:2155705	protein coding gene	purinergic receptor P2Y, G-protein coupled, 14
3	gene	59.14630	59.15363	negative	MGI_C57BL6J_2444074	F630111L10Rik	NCBI_Gene:320463	MGI:2444074	lncRNA gene	RIKEN cDNA F630111L10 gene
3	gene	59.17890	59.19547	negative	MGI_C57BL6J_1934133	Gpr87	NCBI_Gene:84111,ENSEMBL:ENSMUSG00000051431	MGI:1934133	protein coding gene	G protein-coupled receptor 87
3	gene	59.20789	59.21088	negative	MGI_C57BL6J_1921441	P2ry13	NCBI_Gene:74191,ENSEMBL:ENSMUSG00000036362	MGI:1921441	protein coding gene	purinergic receptor P2Y, G-protein coupled 13
3	gene	59.21627	59.26301	negative	MGI_C57BL6J_1918089	P2ry12	NCBI_Gene:70839,ENSEMBL:ENSMUSG00000036353	MGI:1918089	protein coding gene	purinergic receptor P2Y, G-protein coupled 12
3	gene	59.26979	59.27131	positive	MGI_C57BL6J_5663726	Gm43589	ENSEMBL:ENSMUSG00000104550	MGI:5663726	unclassified gene	predicted gene 43589
3	gene	59.31674	59.34444	negative	MGI_C57BL6J_1923481	Igsf10	NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334	MGI:1923481	protein coding gene	immunoglobulin superfamily, member 10
3	gene	59.34427	59.35117	positive	MGI_C57BL6J_5611414	Gm38186	ENSEMBL:ENSMUSG00000103668	MGI:5611414	lncRNA gene	predicted gene, 38186
3	pseudogene	59.42453	59.42476	positive	MGI_C57BL6J_5610943	Gm37715	ENSEMBL:ENSMUSG00000102247	MGI:5610943	pseudogene	predicted gene, 37715
3	pseudogene	59.43154	59.43335	positive	MGI_C57BL6J_3648019	Gm8276	NCBI_Gene:666756,ENSEMBL:ENSMUSG00000102550	MGI:3648019	pseudogene	predicted gene 8276
3	pseudogene	59.46967	59.47409	negative	MGI_C57BL6J_5611516	Gm38288	ENSEMBL:ENSMUSG00000103211	MGI:5611516	pseudogene	predicted gene, 38288
3	gene	59.47493	59.47500	negative	MGI_C57BL6J_4414092	n-TVcac1	NCBI_Gene:102467620	MGI:4414092	tRNA gene	nuclear encoded tRNA valine 1 (anticodon CAC)
3	pseudogene	59.48302	59.48329	positive	MGI_C57BL6J_5610999	Gm37771	ENSEMBL:ENSMUSG00000104038	MGI:5610999	pseudogene	predicted gene, 37771
3	pseudogene	59.50558	59.53523	negative	MGI_C57BL6J_3644725	Gm4856	NCBI_Gene:229330,ENSEMBL:ENSMUSG00000103598	MGI:3644725	pseudogene	predicted gene 4856
3	pseudogene	59.60245	59.63576	negative	MGI_C57BL6J_3644280	Gm5709	NCBI_Gene:435732,ENSEMBL:ENSMUSG00000095128	MGI:3644280	pseudogene	predicted gene 5709
3	gene	59.66286	59.66528	positive	MGI_C57BL6J_5611154	Gm37926	ENSEMBL:ENSMUSG00000102480	MGI:5611154	unclassified gene	predicted gene, 37926
3	gene	59.72979	59.75240	positive	MGI_C57BL6J_3779495	Aadacl2fm2	NCBI_Gene:433597,ENSEMBL:ENSMUSG00000090527	MGI:3779495	protein coding gene	AADACL2 family member 2
3	pseudogene	59.73675	59.73686	negative	MGI_C57BL6J_5611436	Gm38208	ENSEMBL:ENSMUSG00000104471	MGI:5611436	pseudogene	predicted gene, 38208
3	pseudogene	59.73718	59.73732	negative	MGI_C57BL6J_5610807	Gm37579	ENSEMBL:ENSMUSG00000102390	MGI:5610807	pseudogene	predicted gene, 37579
3	pseudogene	59.76721	59.76891	positive	MGI_C57BL6J_3644451	Gm5539	NCBI_Gene:433598,ENSEMBL:ENSMUSG00000103986	MGI:3644451	pseudogene	predicted gene 5539
3	gene	59.77781	59.84682	positive	MGI_C57BL6J_1921922	4930449A18Rik	ENSEMBL:ENSMUSG00000074589	MGI:1921922	protein coding gene	RIKEN cDNA 4930449A18 gene
3	pseudogene	59.78322	59.78863	negative	MGI_C57BL6J_3780925	Gm2756	NCBI_Gene:100040407,ENSEMBL:ENSMUSG00000102757	MGI:3780925	pseudogene	predicted gene 2756
3	gene	59.83837	59.84682	positive	MGI_C57BL6J_4361133	Gm16527	NCBI_Gene:669780	MGI:4361133	protein coding gene	predicted gene, 16527
3	gene	59.86105	59.87731	positive	MGI_C57BL6J_3643798	Aadacl2fm3	NCBI_Gene:666803,ENSEMBL:ENSMUSG00000095522	MGI:3643798	protein coding gene	AADACL2 family member 3
3	gene	59.92521	59.93795	positive	MGI_C57BL6J_3028051	Aadacl2fm1	NCBI_Gene:229333,ENSEMBL:ENSMUSG00000036951	MGI:3028051	protein coding gene	AADACL2 family member 1
3	pseudogene	59.95231	59.97359	positive	MGI_C57BL6J_3819177	Gm9696	NCBI_Gene:676914,ENSEMBL:ENSMUSG00000070465	MGI:3819177	pseudogene	predicted gene 9696
3	gene	60.00674	60.02542	positive	MGI_C57BL6J_3646333	Aadacl2	NCBI_Gene:639634,ENSEMBL:ENSMUSG00000091376	MGI:3646333	protein coding gene	arylacetamide deacetylase like 2
3	pseudogene	60.02036	60.02087	negative	MGI_C57BL6J_5010612	Gm18427	NCBI_Gene:100417154,ENSEMBL:ENSMUSG00000103177	MGI:5010612	pseudogene	predicted gene, 18427
3	gene	60.02572	60.04016	positive	MGI_C57BL6J_1915008	Aadac	NCBI_Gene:67758,ENSEMBL:ENSMUSG00000027761	MGI:1915008	protein coding gene	arylacetamide deacetylase
3	gene	60.08187	60.08757	positive	MGI_C57BL6J_1934135	Sucnr1	NCBI_Gene:84112,ENSEMBL:ENSMUSG00000027762	MGI:1934135	protein coding gene	succinate receptor 1
3	gene	60.12764	60.12775	negative	MGI_C57BL6J_5454159	Gm24382	ENSEMBL:ENSMUSG00000084647	MGI:5454159	snRNA gene	predicted gene, 24382
3	gene	60.29342	60.30941	negative	MGI_C57BL6J_5592809	Gm33650	NCBI_Gene:102636642	MGI:5592809	lncRNA gene	predicted gene, 33650
3	pseudogene	60.34219	60.34309	negative	MGI_C57BL6J_3779880	Tgif1-ps	NCBI_Gene:669823,ENSEMBL:ENSMUSG00000107270	MGI:3779880	pseudogene	TGFB-induced factor homeobox 1, pseudogene
3	gene	60.47279	60.62975	positive	MGI_C57BL6J_1928482	Mbnl1	NCBI_Gene:56758,ENSEMBL:ENSMUSG00000027763	MGI:1928482	protein coding gene	muscleblind like splicing factor 1
3	gene	60.53575	60.53974	positive	MGI_C57BL6J_5610817	Gm37589	ENSEMBL:ENSMUSG00000104235	MGI:5610817	unclassified gene	predicted gene, 37589
3	gene	60.57770	60.58136	positive	MGI_C57BL6J_5012001	Gm19816	NA	NA	unclassified gene	predicted gene%2c 19816
3	gene	60.60438	60.60776	positive	MGI_C57BL6J_5610716	Gm37488	ENSEMBL:ENSMUSG00000104125	MGI:5610716	unclassified gene	predicted gene, 37488
3	pseudogene	60.73763	60.73779	negative	MGI_C57BL6J_5611508	Gm38280	ENSEMBL:ENSMUSG00000104337	MGI:5611508	pseudogene	predicted gene, 38280
3	pseudogene	60.76958	60.77164	negative	MGI_C57BL6J_5592866	Gm33707	NCBI_Gene:102636711,ENSEMBL:ENSMUSG00000102298	MGI:5592866	pseudogene	predicted gene, 33707
3	gene	60.78148	61.00379	negative	MGI_C57BL6J_5610263	Gm37035	NCBI_Gene:105244455,ENSEMBL:ENSMUSG00000102564	MGI:5610263	lncRNA gene	predicted gene, 37035
3	gene	60.78836	60.79473	positive	MGI_C57BL6J_5611554	Gm38326	NCBI_Gene:102642162,ENSEMBL:ENSMUSG00000103587	MGI:5611554	lncRNA gene	predicted gene, 38326
3	pseudogene	60.86071	60.86109	positive	MGI_C57BL6J_5610213	Gm36985	ENSEMBL:ENSMUSG00000102490	MGI:5610213	pseudogene	predicted gene, 36985
3	pseudogene	60.87700	60.87884	positive	MGI_C57BL6J_3644852	Gm8325	NCBI_Gene:666853,ENSEMBL:ENSMUSG00000027694	MGI:3644852	pseudogene	predicted pseudogene 8325
3	gene	61.00279	61.00898	positive	MGI_C57BL6J_105049	P2ry1	NCBI_Gene:18441,ENSEMBL:ENSMUSG00000027765	MGI:105049	protein coding gene	purinergic receptor P2Y, G-protein coupled 1
3	pseudogene	61.29116	61.29145	negative	MGI_C57BL6J_5610947	Gm37719	ENSEMBL:ENSMUSG00000102242	MGI:5610947	pseudogene	predicted gene, 37719
3	pseudogene	61.32849	61.32923	negative	MGI_C57BL6J_5012086	Gm19901	NCBI_Gene:100503798,ENSEMBL:ENSMUSG00000102667	MGI:5012086	pseudogene	predicted gene, 19901
3	gene	61.35855	61.36190	negative	MGI_C57BL6J_5610924	Gm37696	ENSEMBL:ENSMUSG00000103473	MGI:5610924	lncRNA gene	predicted gene, 37696
3	gene	61.36164	61.36870	positive	MGI_C57BL6J_1921262	Rap2b	NCBI_Gene:74012,ENSEMBL:ENSMUSG00000036894	MGI:1921262	protein coding gene	RAP2B, member of RAS oncogene family
3	gene	61.36225	61.36595	negative	MGI_C57BL6J_3697707	B430305J03Rik	ENSEMBL:ENSMUSG00000053706	MGI:3697707	protein coding gene	RIKEN cDNA B430305J03 gene
3	gene	61.39215	61.41303	positive	MGI_C57BL6J_5622946	Gm40061	NCBI_Gene:105244456	MGI:5622946	lncRNA gene	predicted gene, 40061
3	pseudogene	61.46166	61.46288	negative	MGI_C57BL6J_3643135	Gm8349	NCBI_Gene:666891,ENSEMBL:ENSMUSG00000098208	MGI:3643135	pseudogene	predicted gene 8349
3	pseudogene	62.06754	62.06979	negative	MGI_C57BL6J_3780107	Gm9700	NCBI_Gene:676965,ENSEMBL:ENSMUSG00000104489	MGI:3780107	pseudogene	predicted gene 9700
3	gene	62.12321	62.12356	positive	MGI_C57BL6J_5610632	Gm37404	ENSEMBL:ENSMUSG00000103322	MGI:5610632	unclassified gene	predicted gene, 37404
3	gene	62.33752	62.34053	negative	MGI_C57BL6J_3704218	9330121J05Rik	ENSEMBL:ENSMUSG00000103502	MGI:3704218	lncRNA gene	RIKEN cDNA 9330121J05 gene
3	gene	62.33834	62.46222	positive	MGI_C57BL6J_1918053	Arhgef26	NCBI_Gene:622434,ENSEMBL:ENSMUSG00000036885	MGI:1918053	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 26
3	gene	62.34139	62.35052	negative	MGI_C57BL6J_5593082	Gm33923	NCBI_Gene:102637008	MGI:5593082	lncRNA gene	predicted gene, 33923
3	gene	62.46801	62.50703	negative	MGI_C57BL6J_1919412	Dhx36	NCBI_Gene:72162,ENSEMBL:ENSMUSG00000027770	MGI:1919412	protein coding gene	DEAH (Asp-Glu-Ala-His) box polypeptide 36
3	gene	62.52908	62.60544	negative	MGI_C57BL6J_2443628	Gpr149	NCBI_Gene:229357,ENSEMBL:ENSMUSG00000043441	MGI:2443628	protein coding gene	G protein-coupled receptor 149
3	gene	62.60493	62.76393	positive	MGI_C57BL6J_5593207	Gm34048	NCBI_Gene:102637165	MGI:5593207	lncRNA gene	predicted gene, 34048
3	pseudogene	62.76144	62.76202	positive	MGI_C57BL6J_5010567	Gm18382	NCBI_Gene:100417044,ENSEMBL:ENSMUSG00000103764	MGI:5010567	pseudogene	predicted gene, 18382
3	gene	62.77198	62.86064	positive	MGI_C57BL6J_5622947	Gm40062	NCBI_Gene:105244457	MGI:5622947	lncRNA gene	predicted gene, 40062
3	gene	62.86768	62.88900	positive	MGI_C57BL6J_5622948	Gm40063	NCBI_Gene:105244458	MGI:5622948	lncRNA gene	predicted gene, 40063
3	pseudogene	62.92376	62.92426	negative	MGI_C57BL6J_3780108	Gm9701	NCBI_Gene:676984,ENSEMBL:ENSMUSG00000063001	MGI:3780108	pseudogene	predicted gene 9701
3	gene	63.15222	63.15236	positive	MGI_C57BL6J_5452210	Gm22433	ENSEMBL:ENSMUSG00000089175	MGI:5452210	snoRNA gene	predicted gene, 22433
3	pseudogene	63.17311	63.17386	negative	MGI_C57BL6J_3645001	Gm8388	NCBI_Gene:666967,ENSEMBL:ENSMUSG00000102270	MGI:3645001	pseudogene	predicted gene 8388
3	gene	63.23282	63.24545	negative	MGI_C57BL6J_5622949	Gm40064	NCBI_Gene:105244459	MGI:5622949	lncRNA gene	predicted gene, 40064
3	gene	63.24154	63.38603	positive	MGI_C57BL6J_97004	Mme	NCBI_Gene:17380,ENSEMBL:ENSMUSG00000027820	MGI:97004	protein coding gene	membrane metallo endopeptidase
3	gene	63.43925	63.45790	positive	MGI_C57BL6J_5593399	Gm34240	NCBI_Gene:102637430,ENSEMBL:ENSMUSG00000104336	MGI:5593399	lncRNA gene	predicted gene, 34240
3	gene	63.48110	63.48391	negative	MGI_C57BL6J_5593461	Strit1	NCBI_Gene:102637511,ENSEMBL:ENSMUSG00000103476	MGI:5593461	protein coding gene	small transmembrane regulator of ion transport 1
3	gene	63.48388	63.48437	positive	MGI_C57BL6J_5610507	Gm37279	ENSEMBL:ENSMUSG00000102883	MGI:5610507	unclassified gene	predicted gene, 37279
3	gene	63.48899	63.48910	positive	MGI_C57BL6J_5454723	Gm24946	ENSEMBL:ENSMUSG00000088957	MGI:5454723	snRNA gene	predicted gene, 24946
3	gene	63.69620	63.89972	negative	MGI_C57BL6J_2683547	Plch1	NCBI_Gene:269437,ENSEMBL:ENSMUSG00000036834	MGI:2683547	protein coding gene	phospholipase C, eta 1
3	gene	63.77021	63.77031	positive	MGI_C57BL6J_5453277	Gm23500	ENSEMBL:ENSMUSG00000088360	MGI:5453277	snRNA gene	predicted gene, 23500
3	gene	63.79610	63.83685	positive	MGI_C57BL6J_5826444	Gm46807	NCBI_Gene:108168874	MGI:5826444	lncRNA gene	predicted gene, 46807
3	pseudogene	63.82579	63.82644	positive	MGI_C57BL6J_3802047	Gm16162	ENSEMBL:ENSMUSG00000090131	MGI:3802047	pseudogene	predicted gene 16162
3	pseudogene	63.84312	63.84407	positive	MGI_C57BL6J_3801947	Gm16129	ENSEMBL:ENSMUSG00000085290	MGI:3801947	pseudogene	predicted gene 16129
3	pseudogene	63.90543	63.90573	positive	MGI_C57BL6J_5593538	Gm34379	NCBI_Gene:102637617,ENSEMBL:ENSMUSG00000103905	MGI:5593538	pseudogene	predicted gene, 34379
3	gene	63.91468	63.92947	negative	MGI_C57BL6J_3607716	E130311K13Rik	NCBI_Gene:329659,ENSEMBL:ENSMUSG00000048581	MGI:3607716	protein coding gene	RIKEN cDNA E130311K13 gene
3	gene	63.93351	63.96477	negative	MGI_C57BL6J_1332247	Slc33a1	NCBI_Gene:11416,ENSEMBL:ENSMUSG00000027822	MGI:1332247	protein coding gene	solute carrier family 33 (acetyl-CoA transporter), member 1
3	gene	63.96363	63.96866	positive	MGI_C57BL6J_5477344	Gm26850	ENSEMBL:ENSMUSG00000097724	MGI:5477344	lncRNA gene	predicted gene, 26850
3	gene	63.96482	64.02258	positive	MGI_C57BL6J_2448526	Gmps	NCBI_Gene:229363,ENSEMBL:ENSMUSG00000027823	MGI:2448526	protein coding gene	guanine monophosphate synthetase
3	pseudogene	64.05303	64.05561	negative	MGI_C57BL6J_3757653	Vmn2r-ps3	NCBI_Gene:100124546,ENSEMBL:ENSMUSG00000090303	MGI:3757653	pseudogene	vomeronasal 2, receptor, pseudogene 3
3	gene	64.07977	64.22085	positive	MGI_C57BL6J_3645892	Vmn2r1	NCBI_Gene:56544,ENSEMBL:ENSMUSG00000027824	MGI:3645892	protein coding gene	vomeronasal 2, receptor 1
3	gene	64.10963	64.10974	positive	MGI_C57BL6J_5451942	Gm22165	ENSEMBL:ENSMUSG00000089039	MGI:5451942	snRNA gene	predicted gene, 22165
3	gene	64.11528	64.17092	negative	MGI_C57BL6J_3757666	Vmn2r2	NCBI_Gene:100125586,ENSEMBL:ENSMUSG00000043897	MGI:3757666	protein coding gene	vomeronasal 2, receptor 2
3	pseudogene	64.16339	64.16385	positive	MGI_C57BL6J_3779465	Gm5139	NCBI_Gene:380739,ENSEMBL:ENSMUSG00000093447	MGI:3779465	pseudogene	predicted gene 5139
3	pseudogene	64.19557	64.21368	negative	MGI_C57BL6J_5010479	Gm18294	NCBI_Gene:100416861,ENSEMBL:ENSMUSG00000093416	MGI:5010479	pseudogene	predicted gene, 18294
3	gene	64.23373	64.23546	positive	MGI_C57BL6J_5593621	Gm34462	NCBI_Gene:102637724	MGI:5593621	lncRNA gene	predicted gene, 34462
3	gene	64.25722	64.28971	negative	MGI_C57BL6J_3643995	Vmn2r3	NCBI_Gene:637004,ENSEMBL:ENSMUSG00000091572	MGI:3643995	protein coding gene	vomeronasal 2, receptor 3
3	gene	64.27582	64.27619	negative	MGI_C57BL6J_1345615	Ifld3	NA	NA	unclassified gene	induced in fatty liver dystrophy 3
3	gene	64.31841	64.31856	negative	MGI_C57BL6J_5453674	Gm23897	ENSEMBL:ENSMUSG00000088735	MGI:5453674	snoRNA gene	predicted gene, 23897
3	pseudogene	64.32866	64.33285	positive	MGI_C57BL6J_3757669	Vmn2r-ps4	NCBI_Gene:100124547,ENSEMBL:ENSMUSG00000093503	MGI:3757669	pseudogene	vomeronasal 2, receptor, pseudogene 4
3	pseudogene	64.33956	64.35772	negative	MGI_C57BL6J_3645404	Vmn2r-ps5	NCBI_Gene:667031,ENSEMBL:ENSMUSG00000091967	MGI:3645404	polymorphic pseudogene	vomeronasal 2, receptor, pseudogene 5
3	gene	64.38304	64.41537	negative	MGI_C57BL6J_3648229	Vmn2r4	NCBI_Gene:637053,ENSEMBL:ENSMUSG00000092049	MGI:3648229	protein coding gene	vomeronasal 2, receptor 4
3	pseudogene	64.43688	64.43829	negative	MGI_C57BL6J_3757678	Vmn2r-ps6	NCBI_Gene:100124548,ENSEMBL:ENSMUSG00000093395	MGI:3757678	pseudogene	vomeronasal 2, receptor, pseudogene 6
3	pseudogene	64.44260	64.44397	negative	MGI_C57BL6J_3757679	Vmn2r-ps7	NCBI_Gene:672951,ENSEMBL:ENSMUSG00000093546	MGI:3757679	pseudogene	vomeronasal 2, receptor, pseudogene 7
3	pseudogene	64.44797	64.46009	positive	MGI_C57BL6J_5313103	Gm20656	ENSEMBL:ENSMUSG00000093671	MGI:5313103	pseudogene	predicted gene 20656
3	pseudogene	64.47702	64.47932	positive	MGI_C57BL6J_3757680	Vmn2r-ps8	NCBI_Gene:100124549,ENSEMBL:ENSMUSG00000094482	MGI:3757680	pseudogene	vomeronasal 2, receptor, pseudogene 8
3	gene	64.48861	64.50984	negative	MGI_C57BL6J_3649074	Vmn2r5	NCBI_Gene:667060,ENSEMBL:ENSMUSG00000068999	MGI:3649074	protein coding gene	vomeronasal 2, receptor 5
3	gene	64.53131	64.56583	negative	MGI_C57BL6J_3649068	Vmn2r6	NCBI_Gene:667069,ENSEMBL:ENSMUSG00000090581	MGI:3649068	protein coding gene	vomeronasal 2, receptor 6
3	pseudogene	64.59152	64.59290	negative	MGI_C57BL6J_3757686	Vmn2r-ps9	NCBI_Gene:100124550,ENSEMBL:ENSMUSG00000093699	MGI:3757686	pseudogene	vomeronasal 2, receptor, pseudogene 9
3	pseudogene	64.59691	64.60577	positive	MGI_C57BL6J_5313104	Gm20657	ENSEMBL:ENSMUSG00000093484	MGI:5313104	pseudogene	predicted gene 20657
3	pseudogene	64.60043	64.60114	positive	MGI_C57BL6J_3781218	Gm3040	NCBI_Gene:100416170	MGI:3781218	pseudogene	predicted gene 3040
3	pseudogene	64.62169	64.62399	positive	MGI_C57BL6J_3757943	Vmn2r-ps10	NCBI_Gene:100124554,ENSEMBL:ENSMUSG00000095107	MGI:3757943	pseudogene	vomeronasal 2, receptor, pseudogene 10
3	pseudogene	64.63257	64.84474	negative	MGI_C57BL6J_2441682	Vmn2r-ps11	NCBI_Gene:319210,ENSEMBL:ENSMUSG00000093434	MGI:2441682	pseudogene	vomeronasal 2, receptor, pseudogene 11
3	gene	64.63286	64.84474	negative	MGI_C57BL6J_5504054	Gm26939	ENSEMBL:ENSMUSG00000097538	MGI:5504054	lncRNA gene	predicted gene, 26939
3	gene	64.68504	64.84476	negative	MGI_C57BL6J_2441693	Vmn2r7	NCBI_Gene:319217,ENSEMBL:ENSMUSG00000062200	MGI:2441693	protein coding gene	vomeronasal 2, receptor 7
3	pseudogene	64.74475	64.74564	negative	MGI_C57BL6J_3757944	Vmn2r-ps12	NCBI_Gene:100125273,ENSEMBL:ENSMUSG00000093474	MGI:3757944	pseudogene	vomeronasal 2, receptor, pseudogene 12
3	gene	64.89447	64.89460	negative	MGI_C57BL6J_5454999	Gm25222	ENSEMBL:ENSMUSG00000088824	MGI:5454999	snoRNA gene	predicted gene, 25222
3	pseudogene	64.89885	64.89976	positive	MGI_C57BL6J_3757946	Vmn2r-ps13	NCBI_Gene:670110,ENSEMBL:ENSMUSG00000093767	MGI:3757946	pseudogene	vomeronasal 2, receptor, pseudogene 13
3	gene	64.94905	65.37823	positive	MGI_C57BL6J_109155	Kcnab1	NCBI_Gene:16497,ENSEMBL:ENSMUSG00000027827	MGI:109155	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, beta member 1
3	gene	64.94922	65.22370	positive	MGI_C57BL6J_5611276	Gm38048	ENSEMBL:ENSMUSG00000102437	MGI:5611276	lncRNA gene	predicted gene, 38048
3	gene	65.13306	65.30268	negative	MGI_C57BL6J_2443553	A330015K06Rik	NCBI_Gene:102637797,ENSEMBL:ENSMUSG00000104093	MGI:2443553	lncRNA gene	RIKEN cDNA A330015K06 gene
3	gene	65.32402	65.34943	negative	MGI_C57BL6J_2442748	A730090N16Rik	NCBI_Gene:319798,ENSEMBL:ENSMUSG00000090120	MGI:2442748	lncRNA gene	RIKEN cDNA A730090N16 gene
3	gene	65.37965	65.39262	negative	MGI_C57BL6J_1914687	Ssr3	NCBI_Gene:67437,ENSEMBL:ENSMUSG00000027828	MGI:1914687	protein coding gene	signal sequence receptor, gamma
3	pseudogene	65.39332	65.39629	positive	MGI_C57BL6J_3644824	Gm5540	NCBI_Gene:433604,ENSEMBL:ENSMUSG00000048916	MGI:3644824	pseudogene	predicted pseudogene 5540
3	gene	65.44941	65.47981	positive	MGI_C57BL6J_5593735	Gm34576	NCBI_Gene:102637876	MGI:5593735	lncRNA gene	predicted gene, 34576
3	gene	65.49409	65.49563	negative	MGI_C57BL6J_5593939	Gm34780	NCBI_Gene:102638146,ENSEMBL:ENSMUSG00000103513	MGI:5593939	lncRNA gene	predicted gene, 34780
3	gene	65.49517	65.51729	positive	MGI_C57BL6J_5622951	Gm40066	NCBI_Gene:105244461	MGI:5622951	lncRNA gene	predicted gene, 40066
3	pseudogene	65.50628	65.50664	negative	MGI_C57BL6J_5610237	Gm37009	ENSEMBL:ENSMUSG00000103880	MGI:5610237	pseudogene	predicted gene, 37009
3	gene	65.50646	65.52004	negative	MGI_C57BL6J_5621388	Gm38503	NCBI_Gene:102637953	MGI:5621388	lncRNA gene	predicted gene, 38503
3	gene	65.50726	65.52941	negative	MGI_C57BL6J_1918254	4931440P22Rik	NCBI_Gene:71004,ENSEMBL:ENSMUSG00000074580	MGI:1918254	lncRNA gene	RIKEN cDNA 4931440P22 gene
3	gene	65.52570	65.52579	positive	MGI_C57BL6J_5452056	Gm22279	ENSEMBL:ENSMUSG00000087825	MGI:5452056	snRNA gene	predicted gene, 22279
3	gene	65.52841	65.55552	positive	MGI_C57BL6J_2159210	Tiparp	NCBI_Gene:99929,ENSEMBL:ENSMUSG00000034640	MGI:2159210	protein coding gene	TCDD-inducible poly(ADP-ribose) polymerase
3	gene	65.57522	65.58085	negative	MGI_C57BL6J_5594083	Gm34924	NCBI_Gene:102638334	MGI:5594083	lncRNA gene	predicted gene, 34924
3	pseudogene	65.61350	65.61532	positive	MGI_C57BL6J_3648046	Gm5847	NCBI_Gene:545530,ENSEMBL:ENSMUSG00000082280	MGI:3648046	pseudogene	predicted gene 5847
3	pseudogene	65.61537	65.61617	negative	MGI_C57BL6J_5611461	Gm38233	ENSEMBL:ENSMUSG00000103294	MGI:5611461	pseudogene	predicted gene, 38233
3	gene	65.65929	65.65943	positive	MGI_C57BL6J_5531019	Mir8120	miRBase:MI0026052,NCBI_Gene:102465905,ENSEMBL:ENSMUSG00000098944	MGI:5531019	miRNA gene	microRNA 8120
3	gene	65.65954	65.83248	positive	MGI_C57BL6J_3645902	Lekr1	NCBI_Gene:624866,ENSEMBL:ENSMUSG00000074579	MGI:3645902	protein coding gene	leucine, glutamate and lysine rich 1
3	gene	65.67839	65.68088	positive	MGI_C57BL6J_5611004	Gm37776	ENSEMBL:ENSMUSG00000104037	MGI:5611004	unclassified gene	predicted gene, 37776
3	gene	65.77151	65.77162	negative	MGI_C57BL6J_5455532	Gm25755	ENSEMBL:ENSMUSG00000065330	MGI:5455532	snRNA gene	predicted gene, 25755
3	gene	65.82912	65.87228	negative	MGI_C57BL6J_5610587	Gm37359	ENSEMBL:ENSMUSG00000103620	MGI:5610587	lncRNA gene	predicted gene, 37359
3	gene	65.86327	65.86483	negative	MGI_C57BL6J_5610359	Gm37131	ENSEMBL:ENSMUSG00000103440	MGI:5610359	unclassified gene	predicted gene, 37131
3	gene	65.92610	65.92828	negative	MGI_C57BL6J_5594198	Gm35039	NCBI_Gene:102638487	MGI:5594198	lncRNA gene	predicted gene, 35039
3	pseudogene	65.93349	65.93391	negative	MGI_C57BL6J_5610265	Gm37037	ENSEMBL:ENSMUSG00000102566	MGI:5610265	pseudogene	predicted gene, 37037
3	gene	65.94591	65.95839	negative	MGI_C57BL6J_1922664	Ccnl1	NCBI_Gene:56706,ENSEMBL:ENSMUSG00000027829	MGI:1922664	protein coding gene	cyclin L1
3	gene	65.95776	65.96204	positive	MGI_C57BL6J_5610533	Gm37305	ENSEMBL:ENSMUSG00000103041	MGI:5610533	lncRNA gene	predicted gene, 37305
3	pseudogene	65.96873	65.97028	negative	MGI_C57BL6J_5594265	Gm35106	NCBI_Gene:105244463,ENSEMBL:ENSMUSG00000102914	MGI:5594265	pseudogene	predicted gene, 35106
3	gene	65.96991	65.97192	positive	MGI_C57BL6J_5610306	Gm37078	ENSEMBL:ENSMUSG00000102652	MGI:5610306	unclassified gene	predicted gene, 37078
3	pseudogene	65.98716	65.98975	negative	MGI_C57BL6J_5011209	Gm19024	NCBI_Gene:100418133,ENSEMBL:ENSMUSG00000103641	MGI:5011209	pseudogene	predicted gene, 19024
3	pseudogene	66.02950	66.03152	negative	MGI_C57BL6J_3643872	Gm6546	NCBI_Gene:625048,ENSEMBL:ENSMUSG00000103369	MGI:3643872	pseudogene	predicted gene 6546
3	gene	66.05356	66.29707	negative	MGI_C57BL6J_1920039	Veph1	NCBI_Gene:72789,ENSEMBL:ENSMUSG00000027831	MGI:1920039	protein coding gene	ventricular zone expressed PH domain-containing 1
3	gene	66.08668	66.08779	positive	MGI_C57BL6J_5611050	Gm37822	ENSEMBL:ENSMUSG00000104189	MGI:5611050	unclassified gene	predicted gene, 37822
3	gene	66.08811	66.08826	negative	MGI_C57BL6J_5456219	Gm26442	ENSEMBL:ENSMUSG00000064522	MGI:5456219	snRNA gene	predicted gene, 26442
3	pseudogene	66.09981	66.10006	positive	MGI_C57BL6J_5610201	Gm36973	ENSEMBL:ENSMUSG00000104307	MGI:5610201	pseudogene	predicted gene, 36973
3	pseudogene	66.12840	66.12975	negative	MGI_C57BL6J_98800	Tpi-rs2	NCBI_Gene:111205,ENSEMBL:ENSMUSG00000097968	MGI:98800	pseudogene	triosephosphate isomerase related sequence 2
3	pseudogene	66.19109	66.19124	negative	MGI_C57BL6J_5610558	Gm37330	ENSEMBL:ENSMUSG00000103208	MGI:5610558	pseudogene	predicted gene, 37330
3	gene	66.21989	66.22581	positive	MGI_C57BL6J_104641	Ptx3	NCBI_Gene:19288,ENSEMBL:ENSMUSG00000027832	MGI:104641	protein coding gene	pentraxin related gene
3	pseudogene	66.36454	66.36463	positive	MGI_C57BL6J_6275305	Gm50014	ENSEMBL:ENSMUSG00000117623	MGI:6275305	pseudogene	predicted gene, 50014
3	gene	66.37430	66.38810	positive	MGI_C57BL6J_5594343	Gm35184	NCBI_Gene:102638679	MGI:5594343	lncRNA gene	predicted gene, 35184
3	gene	66.40041	66.40607	positive	MGI_C57BL6J_5594395	Gm35236	NCBI_Gene:102638746	MGI:5594395	lncRNA gene	predicted gene, 35236
3	pseudogene	66.56278	66.56355	negative	MGI_C57BL6J_5010137	Gm17952	NCBI_Gene:100416166,ENSEMBL:ENSMUSG00000103600	MGI:5010137	pseudogene	predicted gene, 17952
3	pseudogene	66.88235	66.88314	positive	MGI_C57BL6J_3646021	Gm6555	NCBI_Gene:625115,ENSEMBL:ENSMUSG00000103700	MGI:3646021	pseudogene	predicted gene 6555
3	pseudogene	66.90736	66.90777	negative	MGI_C57BL6J_5611584	Gm38356	ENSEMBL:ENSMUSG00000103318	MGI:5611584	pseudogene	predicted gene, 38356
3	pseudogene	66.95354	66.95386	positive	MGI_C57BL6J_5663653	Gm43516	ENSEMBL:ENSMUSG00000105794	MGI:5663653	pseudogene	predicted gene 43516
3	gene	66.97172	66.98177	negative	MGI_C57BL6J_1201673	Shox2	NCBI_Gene:20429,ENSEMBL:ENSMUSG00000027833	MGI:1201673	protein coding gene	short stature homeobox 2
3	gene	66.98139	67.35840	positive	MGI_C57BL6J_1914130	Rsrc1	NCBI_Gene:66880,ENSEMBL:ENSMUSG00000034544	MGI:1914130	protein coding gene	arginine/serine-rich coiled-coil 1
3	gene	67.05596	67.05606	positive	MGI_C57BL6J_5452072	Gm22295	ENSEMBL:ENSMUSG00000065245	MGI:5452072	snRNA gene	predicted gene, 22295
3	gene	67.36546	67.37516	negative	MGI_C57BL6J_4937036	Gm17402	ENSEMBL:ENSMUSG00000090408	MGI:4937036	protein coding gene	predicted gene, 17402
3	gene	67.37410	67.40000	positive	MGI_C57BL6J_1341819	Mlf1	NCBI_Gene:17349,ENSEMBL:ENSMUSG00000048416	MGI:1341819	protein coding gene	myeloid leukemia factor 1
3	gene	67.43010	67.47653	positive	MGI_C57BL6J_107339	Gfm1	NCBI_Gene:28030,ENSEMBL:ENSMUSG00000027774	MGI:107339	protein coding gene	G elongation factor, mitochondrial 1
3	gene	67.45800	67.46393	negative	MGI_C57BL6J_107633	Lxn	NCBI_Gene:17035,ENSEMBL:ENSMUSG00000047557	MGI:107633	protein coding gene	latexin
3	gene	67.47698	67.47882	positive	MGI_C57BL6J_5662705	Gm42568	ENSEMBL:ENSMUSG00000103703	MGI:5662705	unclassified gene	predicted gene 42568
3	gene	67.47889	67.51552	negative	MGI_C57BL6J_1924461	Rarres1	NCBI_Gene:109222,ENSEMBL:ENSMUSG00000049404	MGI:1924461	protein coding gene	retinoic acid receptor responder (tazarotene induced) 1
3	gene	67.51567	67.51966	positive	MGI_C57BL6J_5622952	Gm40067	NCBI_Gene:105244464	MGI:5622952	lncRNA gene	predicted gene, 40067
3	gene	67.52266	67.55343	negative	MGI_C57BL6J_5594458	Gm35299	NCBI_Gene:102638825,ENSEMBL:ENSMUSG00000103718	MGI:5594458	lncRNA gene	predicted gene, 35299
3	gene	67.57057	67.57282	negative	MGI_C57BL6J_1921179	4930402C01Rik	ENSEMBL:ENSMUSG00000104382	MGI:1921179	lncRNA gene	RIKEN cDNA 4930402C01 gene
3	gene	67.57316	67.57329	negative	MGI_C57BL6J_5455696	Gm25919	ENSEMBL:ENSMUSG00000077459	MGI:5455696	snoRNA gene	predicted gene, 25919
3	gene	67.58274	67.60424	positive	MGI_C57BL6J_1914118	Mfsd1	NCBI_Gene:66868,ENSEMBL:ENSMUSG00000027775	MGI:1914118	protein coding gene	major facilitator superfamily domain containing 1
3	pseudogene	67.60575	67.60785	negative	MGI_C57BL6J_3648243	Gm8515	NCBI_Gene:667207,ENSEMBL:ENSMUSG00000103206	MGI:3648243	pseudogene	predicted gene 8515
3	pseudogene	67.61978	67.62073	negative	MGI_C57BL6J_2685258	Gm412	NCBI_Gene:208424,ENSEMBL:ENSMUSG00000103606	MGI:2685258	pseudogene	predicted gene 412
3	pseudogene	67.68436	67.68475	negative	MGI_C57BL6J_5610829	Gm37601	ENSEMBL:ENSMUSG00000102746	MGI:5610829	pseudogene	predicted gene, 37601
3	pseudogene	67.74197	67.74330	negative	MGI_C57BL6J_5010902	Gm18717	NCBI_Gene:100417618,ENSEMBL:ENSMUSG00000104477	MGI:5010902	pseudogene	predicted gene, 18717
3	gene	67.75360	67.75565	positive	MGI_C57BL6J_5594566	Gm35407	NCBI_Gene:102638975	MGI:5594566	lncRNA gene	predicted gene, 35407
3	gene	67.75566	67.76628	positive	MGI_C57BL6J_5622953	Gm40068	NCBI_Gene:105244465	MGI:5622953	lncRNA gene	predicted gene, 40068
3	gene	67.89222	68.05659	positive	MGI_C57BL6J_3644166	Iqcj	NCBI_Gene:208426,ENSEMBL:ENSMUSG00000051777	MGI:3644166	protein coding gene	IQ motif containing J
3	gene	67.89222	68.62648	positive	MGI_C57BL6J_5439400	Iqschfp	NCBI_Gene:100505386,ENSEMBL:ENSMUSG00000102422	MGI:5439400	protein coding gene	Iqcj and Schip1 fusion protein
3	gene	68.06480	68.62648	positive	MGI_C57BL6J_1353557	Schip1	NCBI_Gene:30953,ENSEMBL:ENSMUSG00000027777	MGI:1353557	protein coding gene	schwannomin interacting protein 1
3	pseudogene	68.30377	68.31036	negative	MGI_C57BL6J_3648047	Gm5848	NCBI_Gene:545531	MGI:3648047	pseudogene	predicted pseudogene 5848
3	pseudogene	68.33319	68.33378	positive	MGI_C57BL6J_3642851	Gm10292	NCBI_Gene:631379,ENSEMBL:ENSMUSG00000102846	MGI:3642851	pseudogene	predicted gene 10292
3	gene	68.40778	68.41470	positive	MGI_C57BL6J_3641783	Gm10723	ENSEMBL:ENSMUSG00000103345	MGI:3641783	unclassified gene	predicted gene 10723
3	gene	68.54752	68.54771	negative	MGI_C57BL6J_5451850	Gm22073	ENSEMBL:ENSMUSG00000084617	MGI:5451850	snRNA gene	predicted gene, 22073
3	gene	68.69064	68.69855	positive	MGI_C57BL6J_96539	Il12a	NCBI_Gene:16159,ENSEMBL:ENSMUSG00000027776	MGI:96539	protein coding gene	interleukin 12a
3	pseudogene	68.73314	68.73808	positive	MGI_C57BL6J_3708676	Gm10040	ENSEMBL:ENSMUSG00000058360	MGI:3708676	pseudogene	predicted gene 10040
3	gene	68.75991	68.76143	negative	MGI_C57BL6J_1922468	4930535E02Rik	ENSEMBL:ENSMUSG00000102677	MGI:1922468	lncRNA gene	RIKEN cDNA 4930535E02 gene
3	gene	68.76136	68.76267	positive	MGI_C57BL6J_5594743	Gm35584	NCBI_Gene:102639225,ENSEMBL:ENSMUSG00000102936	MGI:5594743	lncRNA gene	predicted gene, 35584
3	pseudogene	68.84608	68.84741	positive	MGI_C57BL6J_3644317	Gm7270	NCBI_Gene:639530,ENSEMBL:ENSMUSG00000103218,ENSEMBL:ENSMUSG00000102853	MGI:3644317	pseudogene	predicted gene 7270
3	gene	68.86792	68.87027	negative	MGI_C57BL6J_4937275	Gm17641	ENSEMBL:ENSMUSG00000091272	MGI:4937275	protein coding gene	predicted gene, 17641
3	gene	68.86959	68.87216	positive	MGI_C57BL6J_1915975	1110032F04Rik	NCBI_Gene:68725,ENSEMBL:ENSMUSG00000046999	MGI:1915975	protein coding gene	RIKEN cDNA 1110032F04 gene
3	gene	68.89250	69.00464	negative	MGI_C57BL6J_1915509	Ift80	NCBI_Gene:68259,ENSEMBL:ENSMUSG00000027778	MGI:1915509	protein coding gene	intraflagellar transport 80
3	pseudogene	68.90017	68.90045	negative	MGI_C57BL6J_5313136	Gm20689	ENSEMBL:ENSMUSG00000093384	MGI:5313136	pseudogene	predicted gene 20689
3	pseudogene	68.90181	68.90216	positive	MGI_C57BL6J_5313137	Gm20690	ENSEMBL:ENSMUSG00000093730,ENSEMBL:ENSMUSG00000103007	MGI:5313137	pseudogene	predicted gene 20690
3	pseudogene	68.90216	68.90278	negative	MGI_C57BL6J_5010773	Gm18588	NCBI_Gene:100417394,ENSEMBL:ENSMUSG00000093402	MGI:5010773	pseudogene	predicted gene, 18588
3	pseudogene	68.90382	68.90415	negative	MGI_C57BL6J_5313138	Gm20691	ENSEMBL:ENSMUSG00000093505	MGI:5313138	pseudogene	predicted gene 20691
3	gene	68.91650	68.91732	negative	MGI_C57BL6J_6097561	Gm48183	ENSEMBL:ENSMUSG00000111756	MGI:6097561	unclassified gene	predicted gene, 48183
3	gene	69.00474	69.03462	positive	MGI_C57BL6J_1917349	Smc4	NCBI_Gene:70099,ENSEMBL:ENSMUSG00000034349	MGI:1917349	protein coding gene	structural maintenance of chromosomes 4
3	gene	69.00977	69.00983	positive	MGI_C57BL6J_2676842	Mir15b	miRBase:MI0000140,NCBI_Gene:387175,ENSEMBL:ENSMUSG00000065580	MGI:2676842	miRNA gene	microRNA 15b
3	gene	69.00990	69.01000	positive	MGI_C57BL6J_3618690	Mir16-2	miRBase:MI0000566,NCBI_Gene:723949,ENSEMBL:ENSMUSG00000065606	MGI:3618690	miRNA gene	microRNA 16-2
3	gene	69.03529	69.04640	negative	MGI_C57BL6J_1914199	Trim59	NCBI_Gene:66949,ENSEMBL:ENSMUSG00000034317	MGI:1914199	protein coding gene	tripartite motif-containing 59
3	gene	69.06065	69.06525	positive	MGI_C57BL6J_2442898	9630025H16Rik	NCBI_Gene:105244467	MGI:2442898	lncRNA gene	RIKEN cDNA 9630025H16 gene
3	gene	69.06715	69.12711	negative	MGI_C57BL6J_1100848	Kpna4	NCBI_Gene:16649,ENSEMBL:ENSMUSG00000027782	MGI:1100848	protein coding gene	karyopherin (importin) alpha 4
3	gene	69.08510	69.08545	negative	MGI_C57BL6J_5451786	Gm22009	ENSEMBL:ENSMUSG00000089417	MGI:5451786	snoRNA gene	predicted gene, 22009
3	gene	69.11974	69.12272	negative	MGI_C57BL6J_5610786	Gm37558	ENSEMBL:ENSMUSG00000103094	MGI:5610786	unclassified gene	predicted gene, 37558
3	gene	69.13123	69.15718	positive	MGI_C57BL6J_2686493	Gm1647	NCBI_Gene:381452,ENSEMBL:ENSMUSG00000094763	MGI:2686493	lncRNA gene	predicted gene 1647
3	gene	69.22242	69.22362	positive	MGI_C57BL6J_1918869	Arl14	NCBI_Gene:71619,ENSEMBL:ENSMUSG00000098207	MGI:1918869	protein coding gene	ADP-ribosylation factor-like 14
3	gene	69.25461	69.26383	positive	MGI_C57BL6J_5622955	Gm40070	NCBI_Gene:105244468	MGI:5622955	lncRNA gene	predicted gene, 40070
3	gene	69.31686	69.56080	positive	MGI_C57BL6J_2139740	Ppm1l	NCBI_Gene:242083,ENSEMBL:ENSMUSG00000027784	MGI:2139740	protein coding gene	protein phosphatase 1 (formerly 2C)-like
3	gene	69.31816	69.31929	negative	MGI_C57BL6J_1920514	1700037N05Rik	NA	NA	unclassified gene	RIKEN cDNA 1700037N05 gene
3	pseudogene	69.32001	69.32062	negative	MGI_C57BL6J_4938041	Gm17214	NCBI_Gene:100416279,ENSEMBL:ENSMUSG00000091315	MGI:4938041	pseudogene	predicted gene 17214
3	pseudogene	69.33519	69.33579	negative	MGI_C57BL6J_4938039	Gm17212	NCBI_Gene:100416280,ENSEMBL:ENSMUSG00000090941	MGI:4938039	pseudogene	predicted gene 17212
3	gene	69.37640	69.38370	positive	MGI_C57BL6J_2443158	A330078L11Rik	NA	NA	unclassified gene	RIKEN cDNA A330078L11 gene
3	pseudogene	69.43101	69.43238	negative	MGI_C57BL6J_4938040	Gm17213	NCBI_Gene:100417908,ENSEMBL:ENSMUSG00000090743	MGI:4938040	pseudogene	predicted gene 17213
3	pseudogene	69.56624	69.56747	negative	MGI_C57BL6J_3644126	Gm8565	NCBI_Gene:667309,ENSEMBL:ENSMUSG00000098006	MGI:3644126	pseudogene	predicted gene 8565
3	gene	69.57392	69.59896	negative	MGI_C57BL6J_1349405	B3galnt1	NCBI_Gene:26879,ENSEMBL:ENSMUSG00000043300	MGI:1349405	protein coding gene	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
3	pseudogene	69.66177	69.66216	positive	MGI_C57BL6J_5610608	Gm37380	ENSEMBL:ENSMUSG00000102342	MGI:5610608	pseudogene	predicted gene, 37380
3	gene	69.68547	69.68558	positive	MGI_C57BL6J_5455398	Gm25621	ENSEMBL:ENSMUSG00000087848	MGI:5455398	rRNA gene	predicted gene, 25621
3	pseudogene	69.71694	69.71744	negative	MGI_C57BL6J_98039	Rpl32-ps	NCBI_Gene:19952,ENSEMBL:ENSMUSG00000068969	MGI:98039	pseudogene	ribosomal protein L32, pseudogene
3	gene	69.72199	69.75637	positive	MGI_C57BL6J_2140103	Nmd3	NCBI_Gene:97112,ENSEMBL:ENSMUSG00000027787	MGI:2140103	protein coding gene	NMD3 ribosome export adaptor
3	gene	69.75311	69.75637	positive	MGI_C57BL6J_2442565	9530051E23Rik	NA	NA	unclassified gene	RIKEN cDNA 9530051E23 gene
3	pseudogene	69.80846	69.80902	negative	MGI_C57BL6J_5011240	Gm19055	NCBI_Gene:100418175	MGI:5011240	pseudogene	predicted gene, 19055
3	gene	69.81954	69.85994	negative	MGI_C57BL6J_1913433	Sptssb	NCBI_Gene:66183,ENSEMBL:ENSMUSG00000043461	MGI:1913433	protein coding gene	serine palmitoyltransferase, small subunit B
3	gene	69.88247	69.88411	positive	MGI_C57BL6J_5594976	Gm35817	NCBI_Gene:102639522	MGI:5594976	lncRNA gene	predicted gene, 35817
3	pseudogene	69.95481	69.95568	negative	MGI_C57BL6J_5010080	Gm17895	NCBI_Gene:100416058,ENSEMBL:ENSMUSG00000103549	MGI:5010080	pseudogene	predicted gene, 17895
3	gene	69.96232	69.96245	negative	MGI_C57BL6J_5453261	Gm23484	ENSEMBL:ENSMUSG00000077366	MGI:5453261	snoRNA gene	predicted gene, 23484
3	pseudogene	69.96328	69.96347	positive	MGI_C57BL6J_5611012	Gm37784	ENSEMBL:ENSMUSG00000102525	MGI:5611012	pseudogene	predicted gene, 37784
3	gene	70.00761	70.02871	positive	MGI_C57BL6J_2685260	Otol1	NCBI_Gene:229389,ENSEMBL:ENSMUSG00000027788	MGI:2685260	protein coding gene	otolin 1
3	pseudogene	70.05975	70.06047	positive	MGI_C57BL6J_5610909	Gm37681	ENSEMBL:ENSMUSG00000103020	MGI:5610909	pseudogene	predicted gene, 37681
3	pseudogene	70.11625	70.11653	negative	MGI_C57BL6J_5610813	Gm37585	ENSEMBL:ENSMUSG00000103113	MGI:5610813	pseudogene	predicted gene, 37585
3	gene	70.22875	70.22887	negative	MGI_C57BL6J_5453254	Gm23477	ENSEMBL:ENSMUSG00000089507	MGI:5453254	snoRNA gene	predicted gene, 23477
3	pseudogene	70.41328	70.41388	positive	MGI_C57BL6J_3644892	Gm6631	NCBI_Gene:625868,ENSEMBL:ENSMUSG00000102663	MGI:3644892	pseudogene	predicted gene 6631
3	pseudogene	70.56626	70.56730	negative	MGI_C57BL6J_5610441	Gm37213	ENSEMBL:ENSMUSG00000104023	MGI:5610441	pseudogene	predicted gene, 37213
3	pseudogene	70.68909	70.68938	positive	MGI_C57BL6J_3642422	Gm10780	ENSEMBL:ENSMUSG00000074877	MGI:3642422	pseudogene	predicted gene 10780
3	gene	70.77238	70.80729	negative	MGI_C57BL6J_3643829	Gm6634	NCBI_Gene:625901,ENSEMBL:ENSMUSG00000097252	MGI:3643829	lncRNA gene	predicted gene 6634
3	pseudogene	71.40104	71.40155	negative	MGI_C57BL6J_3646556	Gm8599	NCBI_Gene:108168916,ENSEMBL:ENSMUSG00000102666	MGI:3646556	pseudogene	predicted gene 8599
3	pseudogene	71.46523	71.46567	negative	MGI_C57BL6J_5611533	Gm38305	ENSEMBL:ENSMUSG00000103396	MGI:5611533	pseudogene	predicted gene, 38305
3	pseudogene	71.67252	71.67712	positive	MGI_C57BL6J_5011379	Gm19194	NCBI_Gene:100418413,ENSEMBL:ENSMUSG00000103815	MGI:5011379	pseudogene	predicted gene, 19194
3	pseudogene	71.85918	71.86015	positive	MGI_C57BL6J_3643186	Gm8604	NCBI_Gene:667385,ENSEMBL:ENSMUSG00000098189	MGI:3643186	pseudogene	predicted gene 8604
3	pseudogene	71.89484	71.89499	positive	MGI_C57BL6J_5610845	Gm37617	ENSEMBL:ENSMUSG00000103465	MGI:5610845	pseudogene	predicted gene, 37617
3	pseudogene	72.00992	72.01046	negative	MGI_C57BL6J_5010416	Gm18231	NCBI_Gene:100416754	MGI:5010416	pseudogene	predicted gene, 18231
3	pseudogene	72.05000	72.05062	negative	MGI_C57BL6J_3781529	Gm3351	NCBI_Gene:100041459,ENSEMBL:ENSMUSG00000103279	MGI:3781529	pseudogene	predicted gene 3351
3	pseudogene	72.18074	72.18095	positive	MGI_C57BL6J_5610831	Gm37603	ENSEMBL:ENSMUSG00000103859	MGI:5610831	pseudogene	predicted gene, 37603
3	gene	72.31294	72.31303	positive	MGI_C57BL6J_5530847	Gm27465	ENSEMBL:ENSMUSG00000098869	MGI:5530847	unclassified non-coding RNA gene	predicted gene, 27465
3	pseudogene	72.60384	72.60435	negative	MGI_C57BL6J_5611129	Gm37901	ENSEMBL:ENSMUSG00000103078	MGI:5611129	pseudogene	predicted gene, 37901
3	gene	72.73783	72.73798	negative	MGI_C57BL6J_5452228	Gm22451	ENSEMBL:ENSMUSG00000084752	MGI:5452228	snRNA gene	predicted gene, 22451
3	gene	72.88855	72.96786	negative	MGI_C57BL6J_1917233	Sis	NCBI_Gene:69983,ENSEMBL:ENSMUSG00000027790	MGI:1917233	protein coding gene	sucrase isomaltase (alpha-glucosidase)
3	gene	73.04197	73.04384	negative	MGI_C57BL6J_5610284	Gm37056	ENSEMBL:ENSMUSG00000102753	MGI:5610284	unclassified gene	predicted gene, 37056
3	gene	73.04725	73.05788	negative	MGI_C57BL6J_2679447	Slitrk3	NCBI_Gene:386750,ENSEMBL:ENSMUSG00000048304	MGI:2679447	protein coding gene	SLIT and NTRK-like family, member 3
3	gene	73.06632	73.59483	positive	MGI_C57BL6J_5434110	Gm20754	NCBI_Gene:626082,ENSEMBL:ENSMUSG00000103428	MGI:5434110	lncRNA gene	predicted gene, 20754
3	gene	73.14685	73.14696	positive	MGI_C57BL6J_5454321	Gm24544	ENSEMBL:ENSMUSG00000077050	MGI:5454321	miRNA gene	predicted gene, 24544
3	gene	73.16409	73.16621	positive	MGI_C57BL6J_5610953	Gm37725	ENSEMBL:ENSMUSG00000102916	MGI:5610953	unclassified gene	predicted gene, 37725
3	gene	73.20770	73.20800	negative	MGI_C57BL6J_5452315	Gm22538	ENSEMBL:ENSMUSG00000088794	MGI:5452315	unclassified non-coding RNA gene	predicted gene, 22538
3	gene	73.32943	73.47001	positive	MGI_C57BL6J_5611581	Gm38353	ENSEMBL:ENSMUSG00000102820	MGI:5611581	lncRNA gene	predicted gene, 38353
3	gene	73.35121	73.48165	negative	MGI_C57BL6J_1921943	4930509J09Rik	NCBI_Gene:74693,ENSEMBL:ENSMUSG00000102362	MGI:1921943	lncRNA gene	RIKEN cDNA 4930509J09 gene
3	gene	73.63581	73.70844	negative	MGI_C57BL6J_894278	Bche	NCBI_Gene:12038,ENSEMBL:ENSMUSG00000027792	MGI:894278	protein coding gene	butyrylcholinesterase
3	pseudogene	73.93305	73.93412	positive	MGI_C57BL6J_3644686	Gm8625	NCBI_Gene:667425,ENSEMBL:ENSMUSG00000102859	MGI:3644686	pseudogene	predicted gene 8625
3	gene	74.00922	74.01728	negative	MGI_C57BL6J_5012541	Gm20356	NCBI_Gene:100504692,ENSEMBL:ENSMUSG00000104096	MGI:5012541	lncRNA gene	predicted gene, 20356
3	gene	74.10541	74.12645	negative	MGI_C57BL6J_5595228	Gm36069	NCBI_Gene:102639855	MGI:5595228	lncRNA gene	predicted gene, 36069
3	pseudogene	74.24226	74.29687	negative	MGI_C57BL6J_3779552	Gm6098	NCBI_Gene:100861784,ENSEMBL:ENSMUSG00000096400	MGI:3779552	pseudogene	predicted gene 6098
3	pseudogene	74.32353	74.32399	negative	MGI_C57BL6J_5610278	Gm37050	ENSEMBL:ENSMUSG00000104227	MGI:5610278	pseudogene	predicted gene, 37050
3	pseudogene	74.81472	74.81534	positive	MGI_C57BL6J_3647458	Gm8643	NCBI_Gene:108168917,ENSEMBL:ENSMUSG00000102809	MGI:3647458	pseudogene	predicted gene 8643
3	gene	75.02240	75.02461	negative	MGI_C57BL6J_5610692	Gm37464	ENSEMBL:ENSMUSG00000102420	MGI:5610692	unclassified gene	predicted gene, 37464
3	gene	75.03790	75.16505	negative	MGI_C57BL6J_2674085	Zbbx	NCBI_Gene:213234,ENSEMBL:ENSMUSG00000034151	MGI:2674085	protein coding gene	zinc finger, B-box domain containing
3	gene	75.16506	75.20808	positive	MGI_C57BL6J_5622956	Gm40071	NCBI_Gene:105244469	MGI:5622956	lncRNA gene	predicted gene, 40071
3	gene	75.24236	75.27008	negative	MGI_C57BL6J_1915181	Serpini2	NCBI_Gene:67931,ENSEMBL:ENSMUSG00000034139	MGI:1915181	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 2
3	gene	75.27393	75.48216	negative	MGI_C57BL6J_3645287	Wdr49	NCBI_Gene:213248,ENSEMBL:ENSMUSG00000104301	MGI:3645287	protein coding gene	WD repeat domain 49
3	pseudogene	75.39132	75.39264	positive	MGI_C57BL6J_5010021	Gm17836	NCBI_Gene:100415953,ENSEMBL:ENSMUSG00000103444	MGI:5010021	pseudogene	predicted gene, 17836
3	gene	75.51649	75.55686	negative	MGI_C57BL6J_1928396	Pdcd10	NCBI_Gene:56426,ENSEMBL:ENSMUSG00000027835	MGI:1928396	protein coding gene	programmed cell death 10
3	gene	75.55753	75.64350	positive	MGI_C57BL6J_1194506	Serpini1	NCBI_Gene:20713,ENSEMBL:ENSMUSG00000027834	MGI:1194506	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 1
3	gene	75.61935	75.62336	positive	MGI_C57BL6J_5610900	Gm37672	ENSEMBL:ENSMUSG00000102625	MGI:5610900	unclassified gene	predicted gene, 37672
3	gene	75.64744	75.65573	negative	MGI_C57BL6J_1916443	Platr10	NCBI_Gene:69193,ENSEMBL:ENSMUSG00000099370	MGI:1916443	lncRNA gene	pluripotency associated transcript 10
3	gene	75.69895	75.69946	negative	MGI_C57BL6J_5610421	Gm37193	ENSEMBL:ENSMUSG00000102188	MGI:5610421	unclassified gene	predicted gene, 37193
3	gene	75.71479	75.71492	positive	MGI_C57BL6J_5455623	Gm25846	ENSEMBL:ENSMUSG00000088638	MGI:5455623	snoRNA gene	predicted gene, 25846
3	gene	75.74820	75.78765	positive	MGI_C57BL6J_5579839	Gm29133	ENSEMBL:ENSMUSG00000100962	MGI:5579839	protein coding gene	predicted gene 29133
3	gene	75.87508	75.95695	negative	MGI_C57BL6J_1920374	Golim4	NCBI_Gene:73124,ENSEMBL:ENSMUSG00000034109	MGI:1920374	protein coding gene	golgi integral membrane protein 4
3	gene	75.95212	75.95430	positive	MGI_C57BL6J_5610913	Gm37685	ENSEMBL:ENSMUSG00000103024	MGI:5610913	unclassified gene	predicted gene, 37685
3	gene	75.95610	76.00114	positive	MGI_C57BL6J_5610484	Gm37256	ENSEMBL:ENSMUSG00000104448	MGI:5610484	lncRNA gene	predicted gene, 37256
3	pseudogene	76.04092	76.04172	negative	MGI_C57BL6J_5010613	Gm18428	NCBI_Gene:100417155,ENSEMBL:ENSMUSG00000104223	MGI:5010613	pseudogene	predicted gene, 18428
3	gene	76.07427	76.71002	positive	MGI_C57BL6J_2442179	Fstl5	NCBI_Gene:213262,ENSEMBL:ENSMUSG00000034098	MGI:2442179	protein coding gene	follistatin-like 5
3	gene	76.54669	76.55025	positive	MGI_C57BL6J_5611125	Gm37897	ENSEMBL:ENSMUSG00000103920	MGI:5611125	unclassified gene	predicted gene, 37897
3	pseudogene	76.82206	76.82240	positive	MGI_C57BL6J_5610518	Gm37290	ENSEMBL:ENSMUSG00000103702	MGI:5610518	pseudogene	predicted gene, 37290
3	pseudogene	76.88450	76.88533	positive	MGI_C57BL6J_5011416	Gm19231	NCBI_Gene:100418471,ENSEMBL:ENSMUSG00000102216	MGI:5011416	pseudogene	predicted gene, 19231
3	gene	77.10521	77.10528	negative	MGI_C57BL6J_5453421	Gm23644	ENSEMBL:ENSMUSG00000088481	MGI:5453421	snoRNA gene	predicted gene, 23644
3	pseudogene	77.56081	77.56394	negative	MGI_C57BL6J_2674154	Dnmt3a-ps1	NCBI_Gene:445261,ENSEMBL:ENSMUSG00000102489	MGI:2674154	pseudogene	DNA methyltransferase 3A, pseudogene 1
3	gene	77.56496	77.57134	negative	MGI_C57BL6J_5611034	Gm37806	ENSEMBL:ENSMUSG00000103849	MGI:5611034	unclassified gene	predicted gene, 37806
3	pseudogene	77.69137	77.69223	negative	MGI_C57BL6J_5010480	Gm18295	NCBI_Gene:100416866	MGI:5010480	pseudogene	predicted gene, 18295
3	gene	77.70289	77.70439	negative	MGI_C57BL6J_5611423	Gm38195	ENSEMBL:ENSMUSG00000102872	MGI:5611423	unclassified gene	predicted gene, 38195
3	pseudogene	77.87278	77.87315	negative	MGI_C57BL6J_5610804	Gm37576	ENSEMBL:ENSMUSG00000102393	MGI:5610804	pseudogene	predicted gene, 37576
3	pseudogene	77.96138	77.96280	positive	MGI_C57BL6J_5010904	Gm18719	NCBI_Gene:100417620,ENSEMBL:ENSMUSG00000105026	MGI:5010904	pseudogene	predicted gene, 18719
3	pseudogene	78.00646	78.00698	positive	MGI_C57BL6J_3648953	Gm6677	NCBI_Gene:626461,ENSEMBL:ENSMUSG00000103312	MGI:3648953	pseudogene	predicted gene 6677
3	pseudogene	78.08583	78.08740	negative	MGI_C57BL6J_3643677	Gm8684	NCBI_Gene:667526,ENSEMBL:ENSMUSG00000102637	MGI:3643677	pseudogene	predicted gene 8684
3	pseudogene	78.13446	78.13558	positive	MGI_C57BL6J_3645908	Gm6680	NCBI_Gene:626479,ENSEMBL:ENSMUSG00000103817	MGI:3645908	pseudogene	predicted gene 6680
3	gene	78.40430	78.40594	negative	MGI_C57BL6J_5663463	Gm43326	ENSEMBL:ENSMUSG00000104782	MGI:5663463	unclassified gene	predicted gene 43326
3	gene	78.40616	78.41077	negative	MGI_C57BL6J_5595447	Gm36288	NCBI_Gene:102640153	MGI:5595447	lncRNA gene	predicted gene, 36288
3	pseudogene	78.48658	78.48868	negative	MGI_C57BL6J_3705708	Gm15442	NCBI_Gene:100041691,ENSEMBL:ENSMUSG00000084370	MGI:3705708	pseudogene	predicted gene 15442
3	pseudogene	78.75862	78.75946	positive	MGI_C57BL6J_5011137	Gm18952	NCBI_Gene:100418022,ENSEMBL:ENSMUSG00000102341	MGI:5011137	pseudogene	predicted gene, 18952
3	gene	78.78973	78.79223	negative	MGI_C57BL6J_5595500	Gm36341	NCBI_Gene:102640221	MGI:5595500	lncRNA gene	predicted gene, 36341
3	gene	78.84222	78.84257	positive	MGI_C57BL6J_5454526	Gm24749	ENSEMBL:ENSMUSG00000088463	MGI:5454526	unclassified non-coding RNA gene	predicted gene, 24749
3	pseudogene	78.86489	78.86557	negative	MGI_C57BL6J_5010138	Gm17953	NCBI_Gene:100416167,ENSEMBL:ENSMUSG00000102438	MGI:5010138	pseudogene	predicted gene, 17953
3	pseudogene	78.89183	78.89247	negative	MGI_C57BL6J_3646590	Gm5277	NCBI_Gene:383883,ENSEMBL:ENSMUSG00000091361	MGI:3646590	pseudogene	predicted gene 5277
3	pseudogene	78.91724	78.91846	positive	MGI_C57BL6J_3641638	Gm10291	NCBI_Gene:100041748,ENSEMBL:ENSMUSG00000070443	MGI:3641638	pseudogene	predicted pseudogene 10291
3	gene	78.91846	78.93631	negative	MGI_C57BL6J_5621427	Gm38542	NCBI_Gene:102641233	MGI:5621427	lncRNA gene	predicted gene, 38542
3	pseudogene	78.96549	78.96715	negative	MGI_C57BL6J_3704220	Gm9762	NCBI_Gene:100041766,ENSEMBL:ENSMUSG00000037096	MGI:3704220	pseudogene	predicted pseudogene 9762
3	gene	78.97992	78.98005	positive	MGI_C57BL6J_5453217	Gm23440	ENSEMBL:ENSMUSG00000077487	MGI:5453217	snoRNA gene	predicted gene, 23440
3	gene	79.06251	79.28724	negative	MGI_C57BL6J_2659071	Rapgef2	NCBI_Gene:76089,ENSEMBL:ENSMUSG00000062232	MGI:2659071	protein coding gene	Rap guanine nucleotide exchange factor (GEF) 2
3	gene	79.19637	79.19648	positive	MGI_C57BL6J_5453927	Gm24150	ENSEMBL:ENSMUSG00000064693	MGI:5453927	snRNA gene	predicted gene, 24150
3	gene	79.21292	79.25391	positive	MGI_C57BL6J_1918174	4921511C10Rik	NCBI_Gene:70924,ENSEMBL:ENSMUSG00000104585	MGI:1918174	lncRNA gene	RIKEN cDNA 4921511C10 gene
3	gene	79.23228	79.23413	negative	MGI_C57BL6J_2443462	B930012P20Rik	NA	NA	unclassified gene	RIKEN cDNA B930012P20 gene
3	gene	79.28717	79.28985	positive	MGI_C57BL6J_2686494	6430573P05Rik	ENSEMBL:ENSMUSG00000102545	MGI:2686494	lncRNA gene	RIKEN cDNA 6430573P05 gene
3	gene	79.33420	79.33658	negative	MGI_C57BL6J_5622957	Gm40072	NCBI_Gene:105244470	MGI:5622957	lncRNA gene	predicted gene, 40072
3	gene	79.33666	79.46413	positive	MGI_C57BL6J_4936993	Gm17359	NCBI_Gene:100233207,ENSEMBL:ENSMUSG00000091685	MGI:4936993	protein coding gene	predicted gene, 17359
3	gene	79.45597	79.56780	negative	MGI_C57BL6J_2683054	Fnip2	NCBI_Gene:329679,ENSEMBL:ENSMUSG00000061175	MGI:2683054	protein coding gene	folliculin interacting protein 2
3	gene	79.50979	79.51210	negative	MGI_C57BL6J_5595601	Gm36442	NCBI_Gene:102640362	MGI:5595601	lncRNA gene	predicted gene, 36442
3	gene	79.55131	79.55219	negative	MGI_C57BL6J_3781690	Gm3513	ENSEMBL:ENSMUSG00000089746	MGI:3781690	lncRNA gene	predicted gene 3513
3	gene	79.56819	79.57332	positive	MGI_C57BL6J_1923129	4930589L23Rik	NCBI_Gene:75879,ENSEMBL:ENSMUSG00000068957	MGI:1923129	lncRNA gene	RIKEN cDNA 4930589L23 gene
3	pseudogene	79.58259	79.58323	positive	MGI_C57BL6J_5594226	Gm35067	ENSEMBL:ENSMUSG00000103564	MGI:5594226	pseudogene	predicted gene, 35067
3	gene	79.59134	79.60365	positive	MGI_C57BL6J_1914988	Ppid	NCBI_Gene:67738,ENSEMBL:ENSMUSG00000027804	MGI:1914988	protein coding gene	peptidylprolyl isomerase D (cyclophilin D)
3	gene	79.60379	79.62950	negative	MGI_C57BL6J_106100	Etfdh	NCBI_Gene:66841,ENSEMBL:ENSMUSG00000027809	MGI:106100	protein coding gene	electron transferring flavoprotein, dehydrogenase
3	gene	79.61054	79.61183	negative	MGI_C57BL6J_5611201	Gm37973	ENSEMBL:ENSMUSG00000102370	MGI:5611201	unclassified gene	predicted gene, 37973
3	gene	79.62908	79.63282	positive	MGI_C57BL6J_1923189	4930579G24Rik	NCBI_Gene:75939,ENSEMBL:ENSMUSG00000027811	MGI:1923189	protein coding gene	RIKEN cDNA 4930579G24 gene
3	gene	79.64160	79.73795	negative	MGI_C57BL6J_2682211	Rxfp1	NCBI_Gene:381489,ENSEMBL:ENSMUSG00000034009	MGI:2682211	protein coding gene	relaxin/insulin-like family peptide receptor 1
3	gene	79.67337	79.67688	negative	MGI_C57BL6J_5504099	Gm26984	ENSEMBL:ENSMUSG00000098204	MGI:5504099	lncRNA gene	predicted gene, 26984
3	gene	79.81256	79.85279	negative	MGI_C57BL6J_1917902	Tmem144	NCBI_Gene:70652,ENSEMBL:ENSMUSG00000027956	MGI:1917902	protein coding gene	transmembrane protein 144
3	gene	79.83493	79.83504	positive	MGI_C57BL6J_5456197	Gm26420	ENSEMBL:ENSMUSG00000077461	MGI:5456197	snRNA gene	predicted gene, 26420
3	gene	79.85287	79.85666	positive	MGI_C57BL6J_5622958	Gm40073	NCBI_Gene:105244471	MGI:5622958	lncRNA gene	predicted gene, 40073
3	gene	79.85929	79.88681	negative	MGI_C57BL6J_5595728	Gm36569	NCBI_Gene:102640530,ENSEMBL:ENSMUSG00000102191	MGI:5595728	lncRNA gene	predicted gene, 36569
3	gene	79.88447	79.94628	positive	MGI_C57BL6J_1915909	Gask1b	NCBI_Gene:68659,ENSEMBL:ENSMUSG00000027955	MGI:1915909	protein coding gene	golgi associated kinase 1B
3	gene	80.05489	80.21309	positive	MGI_C57BL6J_2685464	A330069K06Rik	NCBI_Gene:213544,ENSEMBL:ENSMUSG00000103181	MGI:2685464	lncRNA gene	RIKEN cDNA A330069K06 gene
3	gene	80.05987	80.10161	positive	MGI_C57BL6J_5622959	Gm40074	NCBI_Gene:105244472	MGI:5622959	lncRNA gene	predicted gene, 40074
3	pseudogene	80.08808	80.08916	negative	MGI_C57BL6J_5011251	Gm19066	NCBI_Gene:100418193,ENSEMBL:ENSMUSG00000103193	MGI:5011251	pseudogene	predicted gene, 19066
3	gene	80.13413	80.13646	positive	MGI_C57BL6J_5663976	Gm43839	ENSEMBL:ENSMUSG00000105307	MGI:5663976	unclassified gene	predicted gene 43839
3	pseudogene	80.19448	80.19463	negative	MGI_C57BL6J_5611523	Gm38295	ENSEMBL:ENSMUSG00000103154	MGI:5611523	pseudogene	predicted gene, 38295
3	gene	80.20249	80.20560	negative	MGI_C57BL6J_5611120	Gm37892	ENSEMBL:ENSMUSG00000103929	MGI:5611120	lncRNA gene	predicted gene, 37892
3	gene	80.28512	80.33459	negative	MGI_C57BL6J_5611199	Gm37971	ENSEMBL:ENSMUSG00000102379	MGI:5611199	lncRNA gene	predicted gene, 37971
3	pseudogene	80.39935	80.39967	negative	MGI_C57BL6J_3644992	Gm6706	ENSEMBL:ENSMUSG00000087123	MGI:3644992	pseudogene	predicted gene 6706
3	gene	80.68145	80.80320	negative	MGI_C57BL6J_95809	Gria2	NCBI_Gene:14800,ENSEMBL:ENSMUSG00000033981	MGI:95809	protein coding gene	glutamate receptor, ionotropic, AMPA2 (alpha 2)
3	gene	80.69220	80.69231	negative	MGI_C57BL6J_5455526	Gm25749	ENSEMBL:ENSMUSG00000093226	MGI:5455526	miRNA gene	predicted gene, 25749
3	gene	80.84315	80.84355	negative	MGI_C57BL6J_1920346	2900092N11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900092N11 gene
3	gene	80.84360	80.91366	negative	MGI_C57BL6J_95751	Glrb	NCBI_Gene:14658,ENSEMBL:ENSMUSG00000028020	MGI:95751	protein coding gene	glycine receptor, beta subunit
3	pseudogene	80.88509	80.88699	positive	MGI_C57BL6J_5010730	Gm18545	NCBI_Gene:100417342	MGI:5010730	pseudogene	predicted gene, 18545
3	gene	80.96296	80.97163	positive	MGI_C57BL6J_5662605	Gm42468	ENSEMBL:ENSMUSG00000105092	MGI:5662605	lncRNA gene	predicted gene 42468
3	pseudogene	80.99156	81.00159	positive	MGI_C57BL6J_5588967	Gm29808	NCBI_Gene:101056241,ENSEMBL:ENSMUSG00000103419	MGI:5588967	pseudogene	predicted gene, 29808
3	gene	81.03295	81.03377	positive	MGI_C57BL6J_5662613	Gm42476	ENSEMBL:ENSMUSG00000106293	MGI:5662613	lncRNA gene	predicted gene 42476
3	gene	81.03589	81.21404	positive	MGI_C57BL6J_1859631	Pdgfc	NCBI_Gene:54635,ENSEMBL:ENSMUSG00000028019	MGI:1859631	protein coding gene	platelet-derived growth factor, C polypeptide
3	gene	81.03741	81.04044	negative	MGI_C57BL6J_3801866	Gm16000	ENSEMBL:ENSMUSG00000085106	MGI:3801866	lncRNA gene	predicted gene 16000
3	pseudogene	81.40529	81.40557	negative	MGI_C57BL6J_5610528	Gm37300	ENSEMBL:ENSMUSG00000102223	MGI:5610528	pseudogene	predicted gene, 37300

Session information

R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] abind_1.4-5       qtl2_0.22         reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_0.8.5       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] whisker_0.4       getopt_1.20.3     later_1.0.0       git2r_0.26.1     
[29] ellipsis_0.3.2    cachem_1.0.5      withr_2.4.2       mnormt_1.5-7     
[33] magrittr_2.0.1    crayon_1.4.1      memoise_2.0.0     evaluate_0.14    
[37] fs_1.4.1          fansi_0.5.0       nlme_3.1-142      xml2_1.3.1       
[41] tools_3.6.2       hms_0.5.3         lifecycle_1.0.0   stringr_1.4.0    
[45] Rhdf5lib_1.6.3    munsell_0.5.0     compiler_3.6.2    rlang_0.4.11     
[49] grid_3.6.2        rstudioapi_0.13   rmarkdown_2.1     gtable_0.3.0     
[53] DBI_1.1.1         R6_2.5.0          fastmap_1.1.0     bit_4.0.4        
[57] utf8_1.2.1        rprojroot_1.3-2   readr_1.3.1       stringi_1.7.2    
[61] parallel_3.6.2    Rcpp_1.0.7        vctrs_0.3.8       tidyselect_1.0.0 
[65] xfun_0.24