Last updated: 2023-01-11
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| Neogen_Sample_ID | Missing | AA | AC | AG | AT | CC | CG | GC | GG | TA | TC | TG | TT | Total_Genotyped | Percent_Genotyped | MURGIGV01_SNP.Count | cr |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6890-PBS-EOI | 6907 | 28855 | 1978 | 8103 | 5 | 29234 | 6 | 8 | 29535 | 5 | 8000 | 1953 | 28670 | 136352 | 95.18% | 143259 | 0.951786624226052 |
| 7360-PBS-SICK | 8695 | 28393 | 2133 | 8521 | 7 | 28218 | 5 | 8 | 28571 | 3 | 8487 | 2077 | 28141 | 134564 | 93.93% | 143259 | 0.939305732973147 |
| 8153-PBS-EOI | 5960 | 30157 | 1485 | 5950 | 4 | 30917 | 2 | 9 | 31363 | 3 | 5887 | 1462 | 30060 | 137299 | 95.84% | 143259 | 0.958397029156981 |
| D357-PD1-SICK | 12838 | 29033 | 1654 | 6532 | 7 | 27841 | 5 | 8 | 28331 | 3 | 6573 | 1638 | 28796 | 130421 | 91.04% | 143259 | 0.91038608394586 |
| D1014-PD1-SICK | 7415 | 29372 | 1733 | 7174 | 8 | 29743 | 3 | 2 | 30031 | 2 | 6848 | 1685 | 29243 | 135844 | 94.82% | 143259 | 0.948240599194466 |
| D1206-PD1-SICK | 6168 | 28960 | 1988 | 8032 | 8 | 29600 | 5 | 6 | 29877 | 6 | 7929 | 1887 | 28793 | 137091 | 95.69% | 143259 | 0.956945113396017 |
| 6892-PBS-EOI | 6400 | 30122 | 1541 | 6083 | 3 | 30678 | 6 | 4 | 31066 | 2 | 5915 | 1436 | 30003 | 136859 | 95.53% | 143259 | 0.955325668893403 |
| 7363-PBS-SICK | 22020 | 25175 | 2481 | 10114 | 7 | 22938 | 4 | 9 | 23191 | 5 | 9856 | 2429 | 25030 | 121239 | 84.63% | 143259 | 0.846292379536364 |
| 8169-PBS-EOI | 8045 | 29360 | 1691 | 7022 | 9 | 29540 | 5 | 7 | 29852 | 5 | 6775 | 1704 | 29244 | 135214 | 94.38% | 143259 | 0.94384296972616 |
| D538-PD1-SICK | 8871 | 27893 | 2166 | 8919 | 8 | 28293 | 7 | 5 | 28527 | 1 | 8647 | 2120 | 27802 | 134388 | 93.81% | 143259 | 0.938077188867715 |
| D1016-PD1-SICK | 23760 | 24224 | 2656 | 10480 | 12 | 22489 | 9 | 8 | 22671 | 3 | 10207 | 2607 | 24133 | 119499 | 83.41% | 143259 | 0.834146545766758 |
| D1208-PD1-SICK | 8249 | 28828 | 1810 | 7571 | 6 | 29356 | 3 | 4 | 29610 | 1 | 7429 | 1845 | 28547 | 135010 | 94.24% | 143259 | 0.942418975422137 |
| 6894-PBS-EOI | 5525 | 29455 | 1779 | 7359 | 6 | 30374 | 1 | 7 | 30610 | 4 | 7195 | 1778 | 29166 | 137734 | 96.14% | 143259 | 0.961433487599383 |
| 7364-PBS-EOI | 5777 | 29849 | 1687 | 6575 | 5 | 30603 | 6 | 9 | 31017 | 3 | 6468 | 1622 | 29638 | 137482 | 95.97% | 143259 | 0.959674435812061 |
| 8172-PBS-EOI | 30773 | 24266 | 2717 | 10688 | 7 | 18672 | 4 | 8 | 18772 | 7 | 10528 | 2658 | 24159 | 112486 | 78.52% | 143259 | 0.785193251383857 |
| D629-PD1-SICK | 5507 | 30533 | 1440 | 5773 | 5 | 31169 | 6 | 9 | 31496 | 5 | 5591 | 1314 | 30411 | 137752 | 96.16% | 143259 | 0.96155913415562 |
| D315-PD1-SICK | 5834 | 29241 | 1901 | 7621 | 8 | 30015 | 5 | 5 | 30305 | 3 | 7404 | 1859 | 29058 | 137425 | 95.93% | 143259 | 0.959276555050643 |
| D1223-PD1-SICK | 26657 | 17728 | 4054 | 16617 | 11 | 19883 | 12 | 11 | 20024 | 7 | 16434 | 4068 | 17753 | 116602 | 81.39% | 143259 | 0.813924430576788 |
| 7175-PD1-EOI | 6455 | 29901 | 1600 | 6565 | 7 | 30349 | 3 | 8 | 30673 | 5 | 6569 | 1570 | 29554 | 136804 | 95.49% | 143259 | 0.954941748860456 |
| 7805-PBS-EOI | 6697 | 30207 | 1552 | 6087 | 7 | 30472 | 6 | 2 | 30819 | 0 | 5877 | 1422 | 30111 | 136562 | 95.33% | 143259 | 0.953252500715487 |
| 8626-PBS-EOI | 6824 | 28906 | 2065 | 8129 | 9 | 29189 | 5 | 5 | 29479 | 5 | 8009 | 1972 | 28662 | 136435 | 95.24% | 143259 | 0.952365994457591 |
| D704-PD1-SICK | 5950 | 31111 | 1099 | 4500 | 6 | 31869 | 5 | 2 | 32250 | 0 | 4381 | 1116 | 30970 | 137309 | 95.85% | 143259 | 0.958466832799335 |
| D1062-PBS-SICK | 6246 | 30225 | 1440 | 5953 | 7 | 30808 | 5 | 3 | 31208 | 1 | 5960 | 1482 | 29921 | 137013 | 95.64% | 143259 | 0.956400644985655 |
| D1262-PD1-SICK | 5686 | 29267 | 1863 | 7612 | 8 | 30084 | 10 | 8 | 30405 | 3 | 7427 | 1792 | 29094 | 137573 | 96.03% | 143259 | 0.960309648957483 |
| 7181-PBS-EOI | 6248 | 29640 | 1694 | 7062 | 5 | 30185 | 6 | 5 | 30480 | 4 | 6895 | 1648 | 29387 | 137011 | 95.64% | 143259 | 0.956386684257185 |
| 7904-PBS-EOI | 7547 | 28015 | 2298 | 9634 | 10 | 28066 | 8 | 9 | 28229 | 4 | 9288 | 2282 | 27869 | 135712 | 94.73% | 143259 | 0.947319191115392 |
| 8608-PBS-EOI | 6908 | 30670 | 1283 | 5190 | 6 | 31065 | 4 | 6 | 31383 | 2 | 5067 | 1275 | 30400 | 136351 | 95.18% | 143259 | 0.951779643861817 |
| D752-PD1-SICK | 6313 | 28857 | 2007 | 8080 | 7 | 29485 | 11 | 7 | 29889 | 3 | 7971 | 1932 | 28697 | 136946 | 95.59% | 143259 | 0.955932960581883 |
| D1086-PD1-SICK | 6688 | 29530 | 1654 | 6982 | 5 | 30122 | 5 | 4 | 30405 | 1 | 6983 | 1693 | 29187 | 136571 | 95.33% | 143259 | 0.953315323993606 |
| D1280-PD1-SICK | 8382 | 29686 | 1631 | 6393 | 3 | 29785 | 3 | 4 | 30086 | 5 | 6332 | 1565 | 29384 | 134877 | 94.15% | 143259 | 0.941490586978829 |
| 7276-PBS-EOI | 6739 | 29504 | 1724 | 7110 | 7 | 29943 | 8 | 4 | 30270 | 4 | 7032 | 1646 | 29268 | 136520 | 95.30% | 143259 | 0.9529593254176 |
| 7911-PBS-EOI | 7982 | 30257 | 1337 | 5631 | 9 | 30430 | 6 | 6 | 30675 | 1 | 5414 | 1365 | 30146 | 135277 | 94.43% | 143259 | 0.944282732672991 |
| 8615-PBS-EOI | 5637 | 30008 | 1595 | 6486 | 6 | 30787 | 5 | 6 | 31063 | 2 | 6356 | 1548 | 29760 | 137622 | 96.07% | 143259 | 0.960651686805017 |
| D761-PD1-SICK | 9664 | 29514 | 1746 | 6683 | 7 | 28741 | 7 | 6 | 29240 | 2 | 6726 | 1647 | 29276 | 133595 | 93.25% | 143259 | 0.932541760029038 |
| D1088-PD1-SICK | 5594 | 29774 | 1677 | 6869 | 8 | 30572 | 7 | 7 | 30844 | 2 | 6729 | 1614 | 29562 | 137665 | 96.10% | 143259 | 0.96095184246714 |
| D1281-PD1-SICK | 6567 | 30446 | 1378 | 5496 | 4 | 30964 | 2 | 5 | 31302 | 4 | 5450 | 1408 | 30233 | 136692 | 95.42% | 143259 | 0.95415994806609 |
| 7338-PD1-EOI | 5413 | 30898 | 1211 | 5111 | 6 | 31742 | 5 | 6 | 32003 | 3 | 5036 | 1221 | 30604 | 137846 | 96.22% | 143259 | 0.962215288393748 |
| 7912-PBS-EOI | 5662 | 28812 | 2064 | 8320 | 9 | 29563 | 5 | 5 | 29930 | 5 | 8304 | 1988 | 28592 | 137597 | 96.05% | 143259 | 0.960477177699132 |
| 8829-PBS-EOI | 5404 | 29665 | 1666 | 6992 | 8 | 30581 | 4 | 4 | 30924 | 2 | 6827 | 1594 | 29588 | 137855 | 96.23% | 143259 | 0.962278111671867 |
| D857-PD1-SICK | 5395 | 29102 | 1955 | 7999 | 3 | 30017 | 8 | 2 | 30194 | 3 | 7820 | 1924 | 28837 | 137864 | 96.23% | 143259 | 0.962340934949986 |
| D1104-PD1-SICK | 5688 | 31546 | 975 | 3983 | 6 | 32305 | 6 | 3 | 32617 | 1 | 3796 | 946 | 31387 | 137571 | 96.03% | 143259 | 0.960295688229012 |
| D1283-PD1-SICK | 7556 | 29790 | 1645 | 6397 | 5 | 30083 | 4 | 4 | 30350 | 3 | 6287 | 1578 | 29557 | 135703 | 94.73% | 143259 | 0.947256367837274 |
| 7340-PD1-EOI | 5749 | 30541 | 1337 | 5492 | 7 | 31388 | 4 | 2 | 31700 | 0 | 5468 | 1293 | 30278 | 137510 | 95.99% | 143259 | 0.959869886010652 |
| 7915-PBS-EOI | 5343 | 29208 | 1892 | 7896 | 6 | 30121 | 6 | 6 | 30249 | 1 | 7649 | 1860 | 29022 | 137916 | 96.27% | 143259 | 0.962703913890227 |
| 8840-PBS-EOI | 5612 | 30194 | 1524 | 6110 | 7 | 30940 | 4 | 6 | 31228 | 1 | 6148 | 1578 | 29907 | 137647 | 96.08% | 143259 | 0.960826195910903 |
| D964-PD1-SICK | 6066 | 30797 | 1212 | 5048 | 2 | 31564 | 1 | 0 | 31822 | 0 | 4911 | 1245 | 30591 | 137193 | 95.77% | 143259 | 0.957657110548028 |
| D1108-PD1-SICK | 8868 | 28359 | 2060 | 8468 | 7 | 28336 | 6 | 3 | 28648 | 2 | 8230 | 2037 | 28235 | 134391 | 93.81% | 143259 | 0.938098129960421 |
| D1285-PD1-SICK | 5401 | 30529 | 1402 | 5626 | 8 | 31382 | 6 | 9 | 31715 | 5 | 5555 | 1349 | 30272 | 137858 | 96.23% | 143259 | 0.962299052764573 |
| 7348-PBS-EOI | 5281 | 30563 | 1418 | 5622 | 9 | 31346 | 9 | 5 | 31744 | 2 | 5698 | 1319 | 30243 | 137978 | 96.31% | 143259 | 0.963136696472822 |
| 7917-PBS-EOI | 41454 | 21342 | 2870 | 11113 | 8 | 15515 | 5 | 9 | 15786 | 6 | 10954 | 2857 | 21340 | 101805 | 71.06% | 143259 | 0.710635980985488 |
| 8851-PBS-SICK | 5689 | 30443 | 1372 | 5712 | 7 | 31219 | 1 | 6 | 31549 | 3 | 5776 | 1399 | 30083 | 137570 | 96.03% | 143259 | 0.960288707864776 |
| D969-PD1-SICK | 7949 | 30390 | 1374 | 5655 | 7 | 30240 | 5 | 4 | 30577 | 7 | 5627 | 1309 | 30115 | 135310 | 94.45% | 143259 | 0.944513084692759 |
| D1109-PD1-SICK | 7587 | 29640 | 1693 | 6818 | 3 | 29647 | 4 | 9 | 30075 | 2 | 6641 | 1597 | 29543 | 135672 | 94.70% | 143259 | 0.947039976545976 |
| D1290-PD1-SICK | 5954 | 29232 | 1901 | 7634 | 9 | 29850 | 8 | 9 | 30193 | 3 | 7596 | 1836 | 29034 | 137305 | 95.84% | 143259 | 0.958438911342394 |
| 7351-PBS-EOI | 5301 | 27766 | 2492 | 10219 | 13 | 28569 | 11 | 8 | 28868 | 4 | 10056 | 2359 | 27593 | 137958 | 96.30% | 143259 | 0.962997089188114 |
| 7921-PBS-EOI | 5262 | 29624 | 1779 | 7230 | 6 | 30522 | 7 | 5 | 30718 | 1 | 7064 | 1700 | 29341 | 137997 | 96.33% | 143259 | 0.963269323393295 |
| D245-PBS-EOI | 15388 | 29474 | 1578 | 6061 | 6 | 26836 | 1 | 8 | 27202 | 3 | 5947 | 1513 | 29242 | 127871 | 89.26% | 143259 | 0.892586155145575 |
| D975-PD1-SICK | 6191 | 29589 | 1626 | 7080 | 10 | 30309 | 6 | 4 | 30535 | 2 | 6881 | 1617 | 29409 | 137068 | 95.68% | 143259 | 0.956784565018603 |
| D1110-PD1-SICK | 8591 | 30110 | 1476 | 5925 | 6 | 29784 | 4 | 6 | 30123 | 4 | 5901 | 1470 | 29859 | 134668 | 94.00% | 143259 | 0.940031690853629 |
| D1422-PD1-SICK | 5311 | 29465 | 1811 | 7484 | 7 | 30294 | 9 | 9 | 30578 | 1 | 7209 | 1744 | 29337 | 137948 | 96.29% | 143259 | 0.96292728554576 |
| 7357-PBS-EOI | 5849 | 30186 | 1528 | 6213 | 5 | 30821 | 5 | 7 | 31114 | 3 | 6159 | 1525 | 29844 | 137410 | 95.92% | 143259 | 0.959171849587111 |
| 8149-PBS-EOI | 5500 | 30890 | 1263 | 5089 | 5 | 31580 | 5 | 5 | 31974 | 3 | 5033 | 1222 | 30690 | 137759 | 96.16% | 143259 | 0.961607996705268 |
| D250-PBS-EOI | 7063 | 29382 | 1759 | 7238 | 1 | 29778 | 6 | 5 | 30008 | 4 | 7016 | 1784 | 29215 | 136196 | 95.07% | 143259 | 0.950697687405329 |
| D976-PD1-SICK | 5473 | 29910 | 1656 | 6568 | 5 | 30692 | 3 | 4 | 31100 | 2 | 6539 | 1582 | 29725 | 137786 | 96.18% | 143259 | 0.961796466539624 |
| D1142-PD1-SICK | 8217 | 29196 | 1895 | 7325 | 6 | 29031 | 7 | 7 | 29484 | 5 | 7236 | 1782 | 29068 | 135042 | 94.26% | 143259 | 0.94264234707767 |
| D1452-PD1-SICK | 5981 | 28996 | 1928 | 7883 | 4 | 29831 | 3 | 4 | 30178 | 1 | 7761 | 1928 | 28761 | 137278 | 95.83% | 143259 | 0.958250441508038 |
| 7358-PBS-EOI | 5297 | 29181 | 1959 | 7957 | 8 | 29967 | 5 | 6 | 30251 | 1 | 7791 | 1877 | 28959 | 137962 | 96.30% | 143259 | 0.963025010645055 |
| 8144-PBS-EOI | 18141 | 27745 | 2075 | 8263 | 8 | 24554 | 4 | 6 | 24857 | 5 | 8106 | 2029 | 27466 | 125118 | 87.34% | 143259 | 0.873369212405503 |
| D329-PBS-SICK | 10638 | 27808 | 2296 | 9257 | 12 | 26965 | 10 | 6 | 27299 | 4 | 9169 | 2231 | 27564 | 132621 | 92.57% | 143259 | 0.925742885263753 |
| D981-PD1-SICK | 13945 | 28579 | 1782 | 7365 | 8 | 26976 | 2 | 5 | 27258 | 3 | 7132 | 1771 | 28433 | 129314 | 90.27% | 143259 | 0.902658820737266 |
| D1154-PD1-SICK | 5360 | 28864 | 2015 | 8332 | 8 | 29742 | 5 | 9 | 30071 | 5 | 8326 | 1954 | 28568 | 137899 | 96.26% | 143259 | 0.962585247698225 |
| D1454-PD1-SICK | 6009 | 29018 | 1936 | 7858 | 4 | 29795 | 2 | 5 | 30131 | 1 | 7681 | 1927 | 28892 | 137250 | 95.81% | 143259 | 0.958054991309446 |
| Neogen_Sample_ID | Provided.Sex | Inferred.Sex |
|---|---|---|
| 6890-PBS-EOI | F | F |
| 7360-PBS-SICK | F | F |
| 8153-PBS-EOI | F | F |
| D357-PD1-SICK | F | F |
| D1014-PD1-SICK | F | F |
| D1206-PD1-SICK | F | F |
| 6892-PBS-EOI | F | F |
| 7363-PBS-SICK | F | M |
| 8169-PBS-EOI | F | F |
| D538-PD1-SICK | F | F |
| D1016-PD1-SICK | F | F |
| D1208-PD1-SICK | F | F |
| 6894-PBS-EOI | F | F |
| 7364-PBS-EOI | F | F |
| 8172-PBS-EOI | F | M |
| D629-PD1-SICK | F | F |
| D315-PD1-SICK | F | F |
| D1223-PD1-SICK | F | M |
| 7175-PD1-EOI | F | F |
| 7805-PBS-EOI | F | F |
| 8626-PBS-EOI | F | F |
| D704-PD1-SICK | F | F |
| D1062-PBS-SICK | F | F |
| D1262-PD1-SICK | F | F |
| 7181-PBS-EOI | F | F |
| 7904-PBS-EOI | F | F |
| 8608-PBS-EOI | F | F |
| D752-PD1-SICK | F | F |
| D1086-PD1-SICK | F | F |
| D1280-PD1-SICK | F | F |
| 7276-PBS-EOI | F | F |
| 7911-PBS-EOI | F | F |
| 8615-PBS-EOI | F | F |
| D761-PD1-SICK | F | F |
| D1088-PD1-SICK | F | F |
| D1281-PD1-SICK | F | F |
| 7338-PD1-EOI | F | F |
| 7912-PBS-EOI | F | F |
| 8829-PBS-EOI | F | F |
| D857-PD1-SICK | F | F |
| D1104-PD1-SICK | F | F |
| D1283-PD1-SICK | F | F |
| 7340-PD1-EOI | F | F |
| 7915-PBS-EOI | F | F |
| 8840-PBS-EOI | F | F |
| D964-PD1-SICK | F | F |
| D1108-PD1-SICK | F | F |
| D1285-PD1-SICK | F | F |
| 7348-PBS-EOI | F | F |
| 7917-PBS-EOI | F | M |
| 8851-PBS-SICK | F | F |
| D969-PD1-SICK | F | F |
| D1109-PD1-SICK | F | F |
| D1290-PD1-SICK | F | F |
| 7351-PBS-EOI | F | F |
| 7921-PBS-EOI | F | F |
| D245-PBS-EOI | F | F |
| D975-PD1-SICK | F | F |
| D1110-PD1-SICK | F | F |
| D1422-PD1-SICK | F | F |
| 7357-PBS-EOI | F | F |
| 8149-PBS-EOI | F | F |
| D250-PBS-EOI | F | F |
| D976-PD1-SICK | F | F |
| D1142-PD1-SICK | F | F |
| D1452-PD1-SICK | F | F |
| 7358-PBS-EOI | F | F |
| 8144-PBS-EOI | F | M |
| D329-PBS-SICK | F | F |
| D981-PD1-SICK | F | F |
| D1154-PD1-SICK | F | F |
| D1454-PD1-SICK | F | F |
| Neogen_Sample_ID | Myocarditis.Status | age.of.clinical.phenotype..weeks. | clinical.pheno | Drug.Treatment |
|---|---|---|---|---|
| 6890-PBS-EOI | YES | – | EOI | PBS |
| 7360-PBS-SICK | YES | 37.85714286 | SICK | PBS |
| 8153-PBS-EOI | NO | – | EOI | PBS |
| D357-PD1-SICK | YES | 30.4 | SICK | ICI |
| D1014-PD1-SICK | YES | 12.85714286 | SICK | ICI |
| D1206-PD1-SICK | YES | 13.57142857 | SICK | ICI |
| 6892-PBS-EOI | YES | – | EOI | PBS |
| 7363-PBS-SICK | YES | 39.57142857 | SICK | PBS |
| 8169-PBS-EOI | YES | – | EOI | PBS |
| D538-PD1-SICK | YES | 33.14285714 | SICK | ICI |
| D1016-PD1-SICK | YES | 13.28571429 | SICK | ICI |
| D1208-PD1-SICK | YES | 13.57142857 | SICK | ICI |
| 6894-PBS-EOI | YES | – | EOI | PBS |
| 7364-PBS-EOI | NO | – | EOI | PBS |
| 8172-PBS-EOI | YES | – | EOI | PBS |
| D629-PD1-SICK | YES | 25.14285714 | SICK | ICI |
| D315-PD1-SICK | YES | 12.3 | SICK | ICI |
| D1223-PD1-SICK | YES | 13.57142857 | SICK | ICI |
| 7175-PD1-EOI | NO | – | EOI | ICI |
| 7805-PBS-EOI | YES | – | EOI | PBS |
| 8626-PBS-EOI | YES | – | EOI | PBS |
| D704-PD1-SICK | YES | 13 | SICK | ICI |
| D1062-PBS-SICK | YES | 16.28571429 | SICK | PBS |
| D1262-PD1-SICK | YES | 19.14285714 | SICK | ICI |
| 7181-PBS-EOI | YES | – | EOI | PBS |
| 7904-PBS-EOI | YES | – | EOI | PBS |
| 8608-PBS-EOI | NO | – | EOI | PBS |
| D752-PD1-SICK | YES | 19.14285714 | SICK | ICI |
| D1086-PD1-SICK | YES | 13.14285714 | SICK | ICI |
| D1280-PD1-SICK | YES | 13.1 | SICK | ICI |
| 7276-PBS-EOI | YES | – | EOI | PBS |
| 7911-PBS-EOI | YES | – | EOI | PBS |
| 8615-PBS-EOI | YES | – | EOI | PBS |
| D761-PD1-SICK | YES | 19.14285714 | SICK | ICI |
| D1088-PD1-SICK | YES | 13.14285714 | SICK | ICI |
| D1281-PD1-SICK | YES | 13.1 | SICK | ICI |
| 7338-PD1-EOI | YES | – | EOI | ICI |
| 7912-PBS-EOI | YES | – | EOI | PBS |
| 8829-PBS-EOI | YES | – | EOI | PBS |
| D857-PD1-SICK | YES | 14.57142857 | SICK | ICI |
| D1104-PD1-SICK | YES | 13.42857143 | SICK | ICI |
| D1283-PD1-SICK | YES | 13.1 | SICK | ICI |
| 7340-PD1-EOI | YES | – | EOI | ICI |
| 7915-PBS-EOI | YES | – | EOI | PBS |
| 8840-PBS-EOI | YES | – | EOI | PBS |
| D964-PD1-SICK | YES | 12.57142857 | SICK | ICI |
| D1108-PD1-SICK | NO | – | SICK | ICI |
| D1285-PD1-SICK | YES | 13.1 | SICK | ICI |
| 7348-PBS-EOI | YES | – | EOI | PBS |
| 7917-PBS-EOI | YES | – | EOI | PBS |
| 8851-PBS-SICK | YES | 35.71428571 | SICK | PBS |
| D969-PD1-SICK | YES | 12.57142857 | SICK | ICI |
| D1109-PD1-SICK | YES | 13.71428571 | SICK | ICI |
| D1290-PD1-SICK | YES | 13.1 | SICK | ICI |
| 7351-PBS-EOI | NO | – | EOI | PBS |
| 7921-PBS-EOI | YES | – | EOI | PBS |
| D245-PBS-EOI | YES | – | EOI | PBS |
| D975-PD1-SICK | YES | 13.42857143 | SICK | ICI |
| D1110-PD1-SICK | YES | 13.42857143 | SICK | ICI |
| D1422-PD1-SICK | YES | 13.57142857 | SICK | ICI |
| 7357-PBS-EOI | NO | – | EOI | PBS |
| 8149-PBS-EOI | NO | – | EOI | PBS |
| D250-PBS-EOI | NO | – | EOI | PBS |
| D976-PD1-SICK | YES | 13.42857143 | SICK | ICI |
| D1142-PD1-SICK | YES | 13.28571429 | SICK | ICI |
| D1452-PD1-SICK | YES | 13.28571429 | SICK | ICI |
| 7358-PBS-EOI | YES | – | EOI | PBS |
| 8144-PBS-EOI | NO | – | EOI | PBS |
| D329-PBS-SICK | YES | 37.14285714 | SICK | PBS |
| D981-PD1-SICK | YES | 12.57142857 | SICK | ICI |
| D1154-PD1-SICK | YES | 15.28571429 | SICK | ICI |
| D1454-PD1-SICK | NO | – | SICK | ICI |
| Neogen_Sample_ID | no_pheno | low_call.rate | different_sex | |
|---|---|---|---|---|
| 8 | 7363-PBS-SICK | XX | XX | |
| 11 | D1016-PD1-SICK | XX | ||
| 15 | 8172-PBS-EOI | XX | XX | |
| 18 | D1223-PD1-SICK | XX | XX | |
| 50 | 7917-PBS-EOI | XX | XX | |
| 57 | D245-PBS-EOI | XX | ||
| 68 | 8144-PBS-EOI | XX | XX |
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur ... 10.16
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] tibble_3.1.8 readxl_1.4.1 cluster_2.1.4 dplyr_1.0.10
[5] optparse_1.7.3 rhdf5_2.40.0 mclust_6.0.0 tidyr_1.2.1
[9] data.table_1.14.6 knitr_1.41 kableExtra_1.3.4 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.1 purrr_0.3.5
[5] colorspace_2.0-3 vctrs_0.5.1 generics_0.1.3 getopt_1.20.3
[9] htmltools_0.5.3 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2
[13] rlang_1.0.6 jquerylib_0.1.4 later_1.3.0 pillar_1.8.1
[17] withr_2.5.0 DBI_1.1.3 glue_1.6.2 lifecycle_1.0.3
[21] stringr_1.5.0 cellranger_1.1.0 munsell_0.5.0 rvest_1.0.3
[25] evaluate_0.18 callr_3.7.3 fastmap_1.1.0 httpuv_1.6.6
[29] ps_1.7.2 fansi_1.0.3 Rcpp_1.0.9 promises_1.2.0.1
[33] scales_1.2.1 cachem_1.0.6 webshot_0.5.4 jsonlite_1.8.4
[37] fs_1.5.2 systemfonts_1.0.4 digest_0.6.30 stringi_1.7.8
[41] processx_3.8.0 getPass_0.2-2 rprojroot_2.0.3 rhdf5filters_1.8.0
[45] cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4
[49] whisker_0.4.1 pkgconfig_2.0.3 ellipsis_0.3.2 xml2_1.3.3
[53] assertthat_0.2.1 rmarkdown_2.18 svglite_2.1.0 httr_1.4.4
[57] rstudioapi_0.14 Rhdf5lib_1.18.2 R6_2.5.1 git2r_0.30.1
[61] compiler_4.2.2