N E X T F L O W ~ version 19.10.0 Launching `nf-core/chipseq` [pensive_dubinsky] - revision: 0f487ed76d [master] ---------------------------------------------------- ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/chipseq v1.2.1 ---------------------------------------------------- Run Name : pensive_dubinsky Data Type : Paired-End Design File : https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/design.csv Genome : Not supplied Fasta File : https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genome.fa GTF File : https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genes.gtf MACS2 Genome Size : 1.2E+7 Min Consensus Reps : 1 MACS2 Narrow Peaks : No MACS2 Broad Cutoff : 0.1 Trim R1 : 0 bp Trim R2 : 0 bp Trim 3' R1 : 0 bp Trim 3' R2 : 0 bp NextSeq Trim : 0 bp Fingerprint Bins : 100 Save Genome Index : No Max Resources : 6 GB memory, 2 cpus, 12h time per job Output Dir : ./results Launch Dir : /home/stain/src/92 Working Dir : /home/stain/src/92/work Script Dir : /home/stain/.nextflow/assets/nf-core/chipseq User : stain Config Profile : test,conda Config Description : Minimal test dataset to check pipeline function ---------------------------------------------------- [- ] process > CHECK_DESIGN - [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - Creating Conda env: /home/stain/.nextflow/assets/nf-core/chipseq/environment.yml [cache /home/stain/src/92/work/conda/nf-core-chipseq-1.2.1-124f0f8d69d9dfbfcea852493605e617] [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - Creating Conda env: /home/stain/.nextflow/assets/nf-core/chipseq/environment.yml [cache /home/stain/src/92/work/conda/nf-core-chipseq-1.2.1-124f0f8d69d9dfbfcea852493605e617] [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [- ] process > get_software_versions - Creating Conda env: /home/stain/.nextflow/assets/nf-core/chipseq/environment.yml [cache /home/stain/src/92/work/conda/nf-core-chipseq-1.2.1-124f0f8d69d9dfbfcea852493605e617] [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [- ] process > get_software_versions - [- ] process > MULTIQC - [- ] process > output_documentation - Creating Conda env: /home/stain/.nextflow/assets/nf-core/chipseq/environment.yml [cache /home/stain/src/92/work/conda/nf-core-chipseq-1.2.1-124f0f8d69d9dfbfcea852493605e617] [- ] process > CHECK_DESIGN - [- ] process > BWA_INDEX - [- ] process > MAKE_GENE_BED - [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [- ] process > get_software_versions - [- ] process > MULTIQC - [- ] process > output_documentation - Creating Conda env: /home/stain/.nextflow/assets/nf-core/chipseq/environment.yml [cache /home/stain/src/92/work/conda/nf-core-chipseq-1.2.1-124f0f8d69d9dfbfcea852493605e617] Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genome.fa Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genes.gtf executor > local (2) [a0/139af8] process > CHECK_DESIGN (design.csv) [ 0%] 0 of 1 [- ] process > BWA_INDEX - [00/157ada] process > MAKE_GENE_BED (genes.gtf) [ 0%] 0 of 1 [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [- ] process > get_software_versions - [- ] process > MULTIQC - [- ] process > output_documentation - executor > local (3) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [- ] process > BWA_INDEX - [00/157ada] process > MAKE_GENE_BED (genes.gtf) [ 0%] 0 of 1 [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [- ] process > get_software_versions - [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [ 0%] 0 of 1 executor > local (4) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [- ] process > BWA_INDEX - [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [ 0%] 0 of 1 executor > local (4) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [- ] process > BWA_INDEX - [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [ 0%] 0 of 1 Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz executor > local (5) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [- ] process > MAKE_GENOME_FILTER - [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [ 0%] 0 of 1 [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz executor > local (6) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [ 0%] 0 of 1 [- ] process > FASTQC - [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz executor > local (7) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [ 0%] 0 of 1 [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [e1/a217d0] process > FASTQC (SPT5_INPUT_R1_T1) [ 0%] 0 of 1 [- ] process > TRIMGALORE - [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz executor > local (8) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [e1/a217d0] process > FASTQC (SPT5_INPUT_R1_T1) [ 0%] 0 of 1 [04/a99077] process > TRIMGALORE (SPT5_INPUT_R1_T1) [ 0%] 0 of 1 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz executor > local (9) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [e1/a217d0] process > FASTQC (SPT5_INPUT_R1_T1) [ 50%] 1 of 2 [04/a99077] process > TRIMGALORE (SPT5_INPUT_R1_T1) [ 0%] 0 of 1 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz executor > local (10) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [e1/a217d0] process > FASTQC (SPT5_INPUT_R1_T1) [ 50%] 1 of 2 [04/a99077] process > TRIMGALORE (SPT5_INPUT_R1_T1) [ 50%] 1 of 2 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz Staging foreign file: https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz executor > local (11) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [bf/715e9e] process > FASTQC (SPT5_T0_R1_T1) [100%] 2 of 2 [e4/1fd169] process > TRIMGALORE (SPT5_INPUT_R2_T1) [ 33%] 1 of 3 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (12) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [f0/0c96b3] process > FASTQC (SPT5_INPUT_R2_T1) [ 67%] 2 of 3 [e4/1fd169] process > TRIMGALORE (SPT5_INPUT_R2_T1) [ 33%] 1 of 3 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (12) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [f0/0c96b3] process > FASTQC (SPT5_INPUT_R2_T1) [ 67%] 2 of 3 [48/a3a1ab] process > TRIMGALORE (SPT5_T0_R1_T1) [ 67%] 2 of 3 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (13) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [f0/0c96b3] process > FASTQC (SPT5_INPUT_R2_T1) [ 67%] 2 of 3 [e4/1fd169] process > TRIMGALORE (SPT5_INPUT_R2_T1) [ 75%] 3 of 4 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (14) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [61/31369d] process > FASTQC (SPT5_T0_R2_T1) [ 75%] 3 of 4 [e4/1fd169] process > TRIMGALORE (SPT5_INPUT_R2_T1) [ 75%] 3 of 4 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (15) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [3e/c3dc21] process > FASTQC (SPT5_T15_R2_T1) [ 60%] 3 of 5 [21/c72960] process > TRIMGALORE (SPT5_T0_R2_T1) [100%] 4 of 4 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (16) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [61/31369d] process > FASTQC (SPT5_T0_R2_T1) [ 80%] 4 of 5 [5c/92aafc] process > TRIMGALORE (SPT5_T15_R2_T1) [ 80%] 4 of 5 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (17) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [3e/c3dc21] process > FASTQC (SPT5_T15_R2_T1) [100%] 5 of 5 [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [ 67%] 4 of 6 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (18) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [ 83%] 5 of 6 [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [ 67%] 4 of 6 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (18) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [ 83%] 5 of 6 [5c/92aafc] process > TRIMGALORE (SPT5_T15_R2_T1) [ 83%] 5 of 6 [- ] process > BWA_MEM - [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (19) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [ 83%] 5 of 6 [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [95/fd6cbf] process > BWA_MEM (SPT5_INPUT_R1_T1) [ 0%] 0 of 1 [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (20) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a5/0fb53b] process > BWA_MEM (SPT5_T0_R1_T1) [ 0%] 0 of 2 [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (21) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [5c/9d3f6a] process > BWA_MEM (SPT5_INPUT_R2_T1) [ 33%] 1 of 3 [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (22) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a5/0fb53b] process > BWA_MEM (SPT5_T0_R1_T1) [ 50%] 2 of 4 [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (23) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [5c/9d3f6a] process > BWA_MEM (SPT5_INPUT_R2_T1) [ 60%] 3 of 5 [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (24) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/a9ae84] process > BWA_MEM (SPT5_T0_R2_T1) [ 67%] 4 of 6 [- ] process > SORT_BAM - [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (25) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [ea/8d626f] process > BWA_MEM (SPT5_T15_R2_T1) [ 83%] 5 of 6 [7c/53671b] process > SORT_BAM (SPT5_INPUT_R1_T1) [ 0%] 0 of 1 [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (26) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [86/61e059] process > SORT_BAM (SPT5_T0_R1_T1) [ 0%] 0 of 2 [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (27) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [5b/bd5826] process > SORT_BAM (SPT5_INPUT_R2_T1) [ 33%] 1 of 3 [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (28) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [c9/741bb9] process > SORT_BAM (SPT5_T0_R2_T1) [ 50%] 2 of 4 [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (29) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [5b/bd5826] process > SORT_BAM (SPT5_INPUT_R2_T1) [ 60%] 3 of 5 [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (30) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [c9/741bb9] process > SORT_BAM (SPT5_T0_R2_T1) [ 67%] 4 of 6 [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (30) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [93/52da3f] process > SORT_BAM (SPT5_T15_R2_T1) [ 83%] 5 of 6 [- ] process > MERGED_BAM - [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (32) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [18/7f78a9] process > MERGED_BAM (SPT5_INPUT_R1) [ 0%] 0 of 2 [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (33) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a0/5b8bb4] process > MERGED_BAM (SPT5_T0_R2) [ 0%] 0 of 3 [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (33) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a0/83ea26] process > MERGED_BAM (SPT5_T0_R1) [ 33%] 1 of 3 [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (34) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [18/7f78a9] process > MERGED_BAM (SPT5_INPUT_R1) [ 50%] 2 of 4 [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (35) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a0/5b8bb4] process > MERGED_BAM (SPT5_T0_R2) [ 60%] 3 of 5 [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (36) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [20/d306ec] process > MERGED_BAM (SPT5_INPUT_R2) [ 67%] 4 of 6 [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [- ] process > PRESEQ - [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (37) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [41/b46a47] process > MERGED_BAM (SPT5_T15_R1) [ 83%] 5 of 6 [- ] process > MERGED_BAM_FILTER - [- ] process > MERGED_BAM_REMOVE_ORPHAN - [b4/65bc40] process > PRESEQ (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (38) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [84/7667d4] process > MERGED_BAM_FILTER (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [b4/65bc40] process > PRESEQ (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (39) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [84/7667d4] process > MERGED_BAM_FILTER (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [b4/65bc40] process > PRESEQ (SPT5_T0_R1) [ 50%] 1 of 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (40) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [6e/ba78a5] process > MERGED_BAM_FILTER (SPT5_INPUT_R1) [ 50%] 1 of 2 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [b4/65bc40] process > PRESEQ (SPT5_T0_R1) [ 50%] 1 of 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (41) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [6e/ba78a5] process > MERGED_BAM_FILTER (SPT5_INPUT_R1) [ 67%] 2 of 3 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [b4/65bc40] process > PRESEQ (SPT5_T0_R1) [ 50%] 1 of 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (42) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [18/6418d9] process > MERGED_BAM_FILTER (SPT5_T0_R2) [100%] 3 of 3 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [00/578290] process > PRESEQ (SPT5_T0_R2) [ 33%] 1 of 3 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (43) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [18/6418d9] process > MERGED_BAM_FILTER (SPT5_T0_R2) [100%] 3 of 3 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [ba/46b523] process > PRESEQ (SPT5_INPUT_R1) [ 50%] 2 of 4, failed: 1 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored executor > local (44) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [ea/bf3171] process > MERGED_BAM_FILTER (SPT5_INPUT_R2) [ 75%] 3 of 4 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [00/578290] process > PRESEQ (SPT5_T0_R2) [ 75%] 3 of 4, failed: 1 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored executor > local (45) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [ea/bf3171] process > MERGED_BAM_FILTER (SPT5_INPUT_R2) [100%] 4 of 4 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [eb/7f68c9] process > PRESEQ (SPT5_T15_R1) [ 60%] 3 of 5, failed: 1 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored executor > local (45) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [ea/bf3171] process > MERGED_BAM_FILTER (SPT5_INPUT_R2) [100%] 4 of 4 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [7e/c53e66] process > PRESEQ (SPT5_INPUT_R2) [ 80%] 4 of 5, failed: 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (46) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [30/efad13] process > MERGED_BAM_FILTER (SPT5_T15_R1) [ 80%] 4 of 5 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [7e/c53e66] process > PRESEQ (SPT5_INPUT_R2) [ 80%] 4 of 5, failed: 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (47) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [30/efad13] process > MERGED_BAM_FILTER (SPT5_T15_R1) [ 80%] 4 of 5 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [eb/7f68c9] process > PRESEQ (SPT5_T15_R1) [ 83%] 5 of 6, failed: 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (48) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [30/efad13] process > MERGED_BAM_FILTER (SPT5_T15_R1) [ 83%] 5 of 6 [- ] process > MERGED_BAM_REMOVE_ORPHAN - [eb/7f68c9] process > PRESEQ (SPT5_T15_R1) [ 83%] 5 of 6, failed: 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (49) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [52/5d9786] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T0_R1) [ 0%] 0 of 1 [eb/7f68c9] process > PRESEQ (SPT5_T15_R1) [ 83%] 5 of 6, failed: 2 [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (50) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [6e/b5ca3c] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_INPUT_R1) [ 0%] 0 of 2 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [ba/46b523] NOTE: Process `PRESEQ (SPT5_INPUT_R1)` terminated with an error exit status (1) -- Error is ignored [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (51) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [3f/c7d0d7] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T0_R2) [ 0%] 0 of 3 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (51) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [52/5d9786] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T0_R1) [ 33%] 1 of 3 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (52) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [6e/b5ca3c] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_INPUT_R1) [ 50%] 2 of 4 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (53) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [3f/c7d0d7] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T0_R2) [ 60%] 3 of 5 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (54) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [ 50%] 3 of 6 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (54) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [32/8acc3d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_INPUT_R2) [ 67%] 4 of 6 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [- ] process > PHANTOMPEAKQUALTOOLS - [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (55) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [26/fb502b] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R1) [ 83%] 5 of 6 [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [- ] process > BIGWIG - [- ] process > PLOTPROFILE - [93/950ed5] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (56) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [- ] process > PICARD_METRICS - [e7/aae1ce] process > BIGWIG (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > PLOTPROFILE - [93/950ed5] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ [7e/c53e66] NOTE: Process `PRESEQ (SPT5_INPUT_R2)` terminated with an error exit status (1) -- Error is ignored executor > local (57) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [87/f4d9b4] process > PICARD_METRICS (SPT5_T0_R1) [ 0%] 0 of 1 [e7/aae1ce] process > BIGWIG (SPT5_T0_R1) [100%] 1 of 1 [- ] process > PLOTPROFILE - [93/950ed5] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R1) [ 0%] 0 of 1 [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (57) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [87/f4d9b4] process > PICARD_METRICS (SPT5_T0_R1) [ 0%] 0 of 1 [e7/aae1ce] process > BIGWIG (SPT5_T0_R1) [100%] 1 of 1 [- ] process > PLOTPROFILE - [93/950ed5] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R1) [100%] 1 of 1 [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (58) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [87/f4d9b4] process > PICARD_METRICS (SPT5_T0_R1) [ 0%] 0 of 1 [1a/29c342] process > BIGWIG (SPT5_INPUT_R1) [ 50%] 1 of 2 [- ] process > PLOTPROFILE - [93/950ed5] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R1) [100%] 1 of 1 [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (59) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [87/f4d9b4] process > PICARD_METRICS (SPT5_T0_R1) [ 0%] 0 of 1 [1a/29c342] process > BIGWIG (SPT5_INPUT_R1) [100%] 2 of 2 [- ] process > PLOTPROFILE - [e2/327bfd] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R1) [ 50%] 1 of 2 [- ] process > PLOTFINGERPRINT - [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (60) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [87/f4d9b4] process > PICARD_METRICS (SPT5_T0_R1) [100%] 1 of 1 [1a/29c342] process > BIGWIG (SPT5_INPUT_R1) [100%] 2 of 2 [- ] process > PLOTPROFILE - [e2/327bfd] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R1) [ 50%] 1 of 2 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [- ] process > MACS2 - [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (61) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [87/f4d9b4] process > PICARD_METRICS (SPT5_T0_R1) [100%] 1 of 1 [1a/29c342] process > BIGWIG (SPT5_INPUT_R1) [100%] 2 of 2 [- ] process > PLOTPROFILE - [e2/327bfd] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R1) [100%] 2 of 2 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [03/ff7efa] process > MACS2 (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (62) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [4b/6887ed] process > PICARD_METRICS (SPT5_INPUT_R1) [ 50%] 1 of 2 [1a/29c342] process > BIGWIG (SPT5_INPUT_R1) [100%] 2 of 2 [- ] process > PLOTPROFILE - [e2/327bfd] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R1) [100%] 2 of 2 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [03/ff7efa] process > MACS2 (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (63) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [4b/6887ed] process > PICARD_METRICS (SPT5_INPUT_R1) [100%] 2 of 2 [1a/29c342] process > BIGWIG (SPT5_INPUT_R1) [100%] 2 of 2 [- ] process > PLOTPROFILE - [42/5456ea] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R2) [ 67%] 2 of 3 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [03/ff7efa] process > MACS2 (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (64) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [4b/6887ed] process > PICARD_METRICS (SPT5_INPUT_R1) [100%] 2 of 2 [27/db9456] process > BIGWIG (SPT5_T0_R2) [ 67%] 2 of 3 [- ] process > PLOTPROFILE - [42/5456ea] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R2) [100%] 3 of 3 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [03/ff7efa] process > MACS2 (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (65) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [3a/671f05] process > PICARD_METRICS (SPT5_T0_R2) [ 67%] 2 of 3 [27/db9456] process > BIGWIG (SPT5_T0_R2) [100%] 3 of 3 [- ] process > PLOTPROFILE - [42/5456ea] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R2) [100%] 3 of 3 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [03/ff7efa] process > MACS2 (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (66) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [3a/671f05] process > PICARD_METRICS (SPT5_T0_R2) [ 67%] 2 of 3 [ff/1bf441] process > BIGWIG (SPT5_INPUT_R2) [ 75%] 3 of 4 [- ] process > PLOTPROFILE - [42/5456ea] process > PHANTOMPEAKQUALTOOLS (SPT5_T0_R2) [100%] 3 of 3 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [03/ff7efa] process > MACS2 (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (67) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [3a/671f05] process > PICARD_METRICS (SPT5_T0_R2) [ 67%] 2 of 3 [ff/1bf441] process > BIGWIG (SPT5_INPUT_R2) [100%] 4 of 4 [- ] process > PLOTPROFILE - [ce/288494] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R2) [ 75%] 3 of 4 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [03/ff7efa] process > MACS2 (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (68) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [3a/671f05] process > PICARD_METRICS (SPT5_T0_R2) [100%] 3 of 3 [ff/1bf441] process > BIGWIG (SPT5_INPUT_R2) [100%] 4 of 4 [- ] process > PLOTPROFILE - [ce/288494] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R2) [ 75%] 3 of 4 [17/fd3850] process > PLOTFINGERPRINT (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [86/dbe579] process > MACS2 (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 50%] 1 of 2 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (69) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [3a/671f05] process > PICARD_METRICS (SPT5_T0_R2) [100%] 3 of 3 [ff/1bf441] process > BIGWIG (SPT5_INPUT_R2) [100%] 4 of 4 [- ] process > PLOTPROFILE - [ce/288494] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R2) [ 75%] 3 of 4 [70/024eb1] process > PLOTFINGERPRINT (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 50%] 1 of 2 [86/dbe579] process > MACS2 (SPT5_T0_R2 vs SPT5_INPUT_R2) [100%] 2 of 2 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (70) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [b5/9ba593] process > PICARD_METRICS (SPT5_INPUT_R2) [ 75%] 3 of 4 [ff/1bf441] process > BIGWIG (SPT5_INPUT_R2) [100%] 4 of 4 [- ] process > PLOTPROFILE - [ce/288494] process > PHANTOMPEAKQUALTOOLS (SPT5_INPUT_R2) [100%] 4 of 4 [70/024eb1] process > PLOTFINGERPRINT (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 50%] 1 of 2 [86/dbe579] process > MACS2 (SPT5_T0_R2 vs SPT5_INPUT_R2) [100%] 2 of 2 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (71) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [b5/9ba593] process > PICARD_METRICS (SPT5_INPUT_R2) [100%] 4 of 4 [ff/1bf441] process > BIGWIG (SPT5_INPUT_R2) [100%] 4 of 4 [- ] process > PLOTPROFILE - [75/0ddfaf] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R1) [ 80%] 4 of 5 [70/024eb1] process > PLOTFINGERPRINT (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 50%] 1 of 2 [86/dbe579] process > MACS2 (SPT5_T0_R2 vs SPT5_INPUT_R2) [100%] 2 of 2 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (72) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [b5/9ba593] process > PICARD_METRICS (SPT5_INPUT_R2) [100%] 4 of 4 [0d/15fba4] process > BIGWIG (SPT5_T15_R1) [ 80%] 4 of 5 [- ] process > PLOTPROFILE - [75/0ddfaf] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R1) [100%] 5 of 5 [70/024eb1] process > PLOTFINGERPRINT (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 50%] 1 of 2 [86/dbe579] process > MACS2 (SPT5_T0_R2 vs SPT5_INPUT_R2) [100%] 2 of 2 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (73) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [b5/9ba593] process > PICARD_METRICS (SPT5_INPUT_R2) [100%] 4 of 4 [0d/15fba4] process > BIGWIG (SPT5_T15_R1) [100%] 5 of 5 [- ] process > PLOTPROFILE - [75/0ddfaf] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R1) [100%] 5 of 5 [e8/c7dfee] process > PLOTFINGERPRINT (SPT5_T15_R1 vs SPT5_INPUT_R1) [ 33%] 1 of 3 [86/dbe579] process > MACS2 (SPT5_T0_R2 vs SPT5_INPUT_R2) [100%] 2 of 2 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (74) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [b5/9ba593] process > PICARD_METRICS (SPT5_INPUT_R2) [100%] 4 of 4 [0d/15fba4] process > BIGWIG (SPT5_T15_R1) [100%] 5 of 5 [- ] process > PLOTPROFILE - [75/0ddfaf] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R1) [100%] 5 of 5 [70/024eb1] process > PLOTFINGERPRINT (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 67%] 2 of 3 [53/a7f0c7] process > MACS2 (SPT5_T15_R1 vs SPT5_INPUT_R1) [ 67%] 2 of 3 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (75) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [ae/351ea9] process > PICARD_METRICS (SPT5_T15_R1) [ 80%] 4 of 5 [0d/15fba4] process > BIGWIG (SPT5_T15_R1) [100%] 5 of 5 [- ] process > PLOTPROFILE - [75/0ddfaf] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R1) [100%] 5 of 5 [70/024eb1] process > PLOTFINGERPRINT (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 67%] 2 of 3 [53/a7f0c7] process > MACS2 (SPT5_T15_R1 vs SPT5_INPUT_R1) [100%] 3 of 3 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (76) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [ae/351ea9] process > PICARD_METRICS (SPT5_T15_R1) [100%] 5 of 5 [0d/15fba4] process > BIGWIG (SPT5_T15_R1) [100%] 5 of 5 [- ] process > PLOTPROFILE - [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [ 83%] 5 of 6 [70/024eb1] process > PLOTFINGERPRINT (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 67%] 2 of 3 [53/a7f0c7] process > MACS2 (SPT5_T15_R1 vs SPT5_INPUT_R1) [100%] 3 of 3 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (78) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [ae/351ea9] process > PICARD_METRICS (SPT5_T15_R1) [100%] 5 of 5 [61/3209cb] process > BIGWIG (SPT5_T15_R2) [ 83%] 5 of 6 [- ] process > PLOTPROFILE - [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [e8/c7dfee] process > PLOTFINGERPRINT (SPT5_T15_R1 vs SPT5_INPUT_R1) [100%] 3 of 3 [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (79) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [ae/351ea9] process > PICARD_METRICS (SPT5_T15_R1) [100%] 5 of 5 [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [- ] process > PLOTPROFILE - [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (80) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [ 83%] 5 of 6 [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [- ] process > PLOTPROFILE - [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (81) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [75/a683f1] process > PLOTPROFILE (SPT5_T0_R1) [ 0%] 0 of 1 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (82) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/b05864] process > PLOTPROFILE (SPT5_INPUT_R1) [ 0%] 0 of 2 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [- ] process > MACS2_ANNOTATE - [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (83) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [75/a683f1] process > PLOTPROFILE (SPT5_T0_R1) [ 50%] 1 of 2 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [40/2629f7] process > MACS2_ANNOTATE (SPT5_T0_R1 vs SPT5_INPUT_R1) [ 0%] 0 of 1 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (84) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [72/4ba4e7] process > PLOTPROFILE (SPT5_T0_R2) [ 33%] 1 of 3 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [40/2629f7] process > MACS2_ANNOTATE (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (85) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/b05864] process > PLOTPROFILE (SPT5_INPUT_R1) [ 50%] 2 of 4 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [40/2629f7] process > MACS2_ANNOTATE (SPT5_T0_R1 vs SPT5_INPUT_R1) [100%] 1 of 1 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (86) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/b05864] process > PLOTPROFILE (SPT5_INPUT_R1) [ 50%] 2 of 4 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [ec/d1de3e] process > MACS2_ANNOTATE (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 50%] 1 of 2 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (86) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [72/4ba4e7] process > PLOTPROFILE (SPT5_T0_R2) [ 75%] 3 of 4 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [ec/d1de3e] process > MACS2_ANNOTATE (SPT5_T0_R2 vs SPT5_INPUT_R2) [ 50%] 1 of 2 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (87) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [ca/fbf7fb] process > PLOTPROFILE (SPT5_T15_R1) [ 60%] 3 of 5 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [ec/d1de3e] process > MACS2_ANNOTATE (SPT5_T0_R2 vs SPT5_INPUT_R2) [100%] 2 of 2 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (88) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [ad/2c47a1] process > PLOTPROFILE (SPT5_INPUT_R2) [ 80%] 4 of 5 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [47/9ffee3] process > MACS2_ANNOTATE (SPT5_T15_R1 vs SPT5_INPUT_R1) [ 67%] 2 of 3 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (89) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [ 67%] 4 of 6 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [47/9ffee3] process > MACS2_ANNOTATE (SPT5_T15_R1 vs SPT5_INPUT_R1) [100%] 3 of 3 [- ] process > MACS2_QC - [- ] process > CONSENSUS_PEAKS - [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (90) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [ 67%] 4 of 6 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [47/9ffee3] process > MACS2_ANNOTATE (SPT5_T15_R1 vs SPT5_INPUT_R1) [100%] 3 of 3 [- ] process > MACS2_QC - [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [ 0%] 0 of 1 [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (90) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [ca/fbf7fb] process > PLOTPROFILE (SPT5_T15_R1) [ 83%] 5 of 6 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [47/9ffee3] process > MACS2_ANNOTATE (SPT5_T15_R1 vs SPT5_INPUT_R1) [100%] 3 of 3 [- ] process > MACS2_QC - [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [ 0%] 0 of 1 [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (91) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [ca/fbf7fb] process > PLOTPROFILE (SPT5_T15_R1) [ 83%] 5 of 6 [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [- ] process > MACS2_QC - [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (91) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [ca/fbf7fb] process > PLOTPROFILE (SPT5_T15_R1) [ 83%] 5 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [- ] process > MACS2_QC - [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [- ] process > CONSENSUS_PEAKS_ANNOTATE - [- ] process > CONSENSUS_PEAKS_COUNTS - [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (92) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [ 75%] 3 of 4 [- ] process > MACS2_QC - [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [- ] process > CONSENSUS_PEAKS_ANNOTATE - [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [ 0%] 0 of 1 [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (93) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [- ] process > MACS2_QC - [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [ 0%] 0 of 1 [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [ 0%] 0 of 1 [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (94) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [ 0%] 0 of 1 [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [ 0%] 0 of 1 [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [- ] process > CONSENSUS_PEAKS_DESEQ2 - [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (95) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [ 0%] 0 of 1 [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [ 0%] 0 of 1 [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (95) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [100%] 1 of 1 ✔ [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [ 0%] 0 of 1 [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [- ] process > MULTIQC - [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (96) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [100%] 1 of 1 ✔ [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [100%] 1 of 1 ✔ [- ] process > IGV - [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [68/199ec6] process > MULTIQC (1) [ 0%] 0 of 1 [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (97) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [100%] 1 of 1 ✔ [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [100%] 1 of 1 ✔ [08/d40313] process > IGV [ 0%] 0 of 1 [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [68/199ec6] process > MULTIQC (1) [ 0%] 0 of 1 [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (97) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [100%] 1 of 1 ✔ [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [100%] 1 of 1 ✔ [08/d40313] process > IGV [100%] 1 of 1 ✔ [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [68/199ec6] process > MULTIQC (1) [ 0%] 0 of 1 [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (97) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [100%] 1 of 1 ✔ [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [100%] 1 of 1 ✔ [08/d40313] process > IGV [100%] 1 of 1 ✔ [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [68/199ec6] process > MULTIQC (1) [100%] 1 of 1 ✔ [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ executor > local (97) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [100%] 1 of 1 ✔ [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [100%] 1 of 1 ✔ [08/d40313] process > IGV [100%] 1 of 1 ✔ [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [68/199ec6] process > MULTIQC (1) [100%] 1 of 1 ✔ [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ -Warning, pipeline completed, but with errored process(es) - -Number of ignored errored process(es) : 2 - -Number of successfully ran process(es) : 95 - -[nf-core/chipseq] Pipeline completed successfully- executor > local (97) [a0/139af8] process > CHECK_DESIGN (design.csv) [100%] 1 of 1 ✔ [55/92a4f2] process > BWA_INDEX (genome.fa) [100%] 1 of 1 ✔ [00/157ada] process > MAKE_GENE_BED (genes.gtf) [100%] 1 of 1 ✔ [34/1d5b54] process > MAKE_GENOME_FILTER (genome.fa) [100%] 1 of 1 ✔ [be/022ad6] process > FASTQC (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a1/70bf36] process > TRIMGALORE (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [1b/db658c] process > BWA_MEM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [a2/74e365] process > SORT_BAM (SPT5_T15_R1_T1) [100%] 6 of 6 ✔ [17/674501] process > MERGED_BAM (SPT5_T15_R2) [100%] 6 of 6 ✔ [98/46e072] process > MERGED_BAM_FILTER (SPT5_T15_R2) [100%] 6 of 6 ✔ [2f/c60b2d] process > MERGED_BAM_REMOVE_ORPHAN (SPT5_T15_R2) [100%] 6 of 6 ✔ [c4/34c7e6] process > PRESEQ (SPT5_T15_R2) [100%] 6 of 6, failed: 2 ✔ [97/2d093f] process > PICARD_METRICS (SPT5_T15_R2) [100%] 6 of 6 ✔ [61/3209cb] process > BIGWIG (SPT5_T15_R2) [100%] 6 of 6 ✔ [93/adeaf4] process > PLOTPROFILE (SPT5_T15_R2) [100%] 6 of 6 ✔ [e7/82015b] process > PHANTOMPEAKQUALTOOLS (SPT5_T15_R2) [100%] 6 of 6 ✔ [79/2670ee] process > PLOTFINGERPRINT (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [be/4eaebd] process > MACS2 (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [4d/d3c0a6] process > MACS2_ANNOTATE (SPT5_T15_R2 vs SPT5_INPUT_R2) [100%] 4 of 4 ✔ [2e/c38082] process > MACS2_QC [100%] 1 of 1 ✔ [e9/d5c26f] process > CONSENSUS_PEAKS (SPT5) [100%] 1 of 1 ✔ [3d/128e0a] process > CONSENSUS_PEAKS_ANNOTATE (SPT5) [100%] 1 of 1 ✔ [48/070bc1] process > CONSENSUS_PEAKS_COUNTS (SPT5) [100%] 1 of 1 ✔ [ef/d1ca38] process > CONSENSUS_PEAKS_DESEQ2 (SPT5) [100%] 1 of 1 ✔ [08/d40313] process > IGV [100%] 1 of 1 ✔ [3f/286e4e] process > get_software_versions [100%] 1 of 1 ✔ [68/199ec6] process > MULTIQC (1) [100%] 1 of 1 ✔ [59/f71c9f] process > output_documentation [100%] 1 of 1 ✔ -Warning, pipeline completed, but with errored process(es) - -Number of ignored errored process(es) : 2 - -Number of successfully ran process(es) : 95 - -[nf-core/chipseq] Pipeline completed successfully- Completed at: 10-Sep-2020 13:27:01 Duration : 33m 54s CPU hours : 1.8 (1% failed) Succeeded : 95 Ignored : 2