Last updated: 2022-06-06

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Knit directory: Test/

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general presentation

load("output/list_output.RData")
if (!any(names(list_output)==today)){
  data = read.csv2(paste0("data/json/", today, "/position.csv"))
  list_tag <- split(data, data$tag)
  output = data.frame(tag = names(list_tag))
  output$number = lapply(list_tag, nrow)
  output$date = today
  list_output[[today]] = output
  save(list_output, file = "output/list_output.RData")
}
output = do.call(rbind.data.frame, list_output)

tagId = unique(output$tag)
names_tag = read.xlsx("data/Inventaire Tags - Firminy - 2022.xlsx")
names_tag = names_tag %>% filter(Identifiant %in% tagId)
names_tag = names_tag[order(match(names_tag$Identifiant, tagId)), ]

days = unique(output$date)

table = as.data.frame(matrix(NA, nrow = length(tagId), ncol = length(days)))
colnames(table) = days
rownames(table) = tagId
for (i in 1:nrow(output)){
  table[which(tagId==output$tag[i]), which(days==output$date[i])] = output$number[i]
}
table = cbind(data.frame(type = names_tag$affectation), table)

table = table[,c(1,ncol(table):2)]
datatable(table, editable = F, extensions = 'Buttons', options = list(pageLength = nrow(table), dom = 'Bfrtip'))

general statistics

daily statistics

table_general = data.frame(date = days)
table_general$number_tag = as.numeric(lapply(list_output, function(x){nrow(x)}))
table_general$number_data = as.numeric(lapply(list_output, function(x){sum(as.numeric(x$number))}))

table_general = table_general[nrow(table_general):1,]

datatable(table_general, editable = F, extensions = 'Buttons', options = list(pageLength = 20, dom = 'Bfrtip'))

tag statistics

tag_general = data.frame(id = names_tag$Identifiant, label = names_tag$affectation)
tag_general$number_days = NA
tag_general$number_data = NA
tag_general$daily_average = NA
for (k in 1:nrow(tag_general)){
  tag_general$number_days[k] = sum(output$tag == tag_general$id[k])
  tag_general$number_data[k] = sum(unlist(output[which(output$tag == tag_general$id[k]), "number"]))
  tag_general$daily_average[k] = round(tag_general$number_data[k]/tag_general$number_days[k])
}

datatable(tag_general, editable = F, extensions = 'Buttons', options = list(pageLength = 20, dom = 'Bfrtip'))

sessionInfo()
R version 4.0.5 (2021-03-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] zh_CN.UTF-8/zh_CN.UTF-8/zh_CN.UTF-8/C/zh_CN.UTF-8/zh_CN.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] htmltools_0.5.2  openxlsx_4.2.4   scales_1.1.1     DT_0.19         
 [5] readxl_1.3.1     lubridate_1.7.10 dplyr_1.0.5      nnet_7.3-15     
 [9] kableExtra_1.3.4 rjson_0.2.20     cowplot_1.1.1    gifski_1.4.3-1  
[13] gganimate_1.0.7  ggplot2_3.3.5    workflowr_1.7.0 

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.7        svglite_2.0.0     prettyunits_1.1.1 getPass_0.2-2    
 [5] ps_1.6.0          rprojroot_2.0.2   digest_0.6.27     utf8_1.2.1       
 [9] mime_0.10         cellranger_1.1.0  R6_2.5.0          evaluate_0.14    
[13] httr_1.4.2        pillar_1.6.0      rlang_1.0.2       progress_1.2.2   
[17] rstudioapi_0.13   whisker_0.4       callr_3.7.0       jquerylib_0.1.3  
[21] rmarkdown_2.10    webshot_0.5.2     stringr_1.4.0     htmlwidgets_1.5.3
[25] munsell_0.5.0     shiny_1.6.0       compiler_4.0.5    httpuv_1.5.5     
[29] xfun_0.29         pkgconfig_2.0.3   systemfonts_1.0.1 tidyselect_1.1.0 
[33] tibble_3.1.0      fansi_0.4.2       viridisLite_0.4.0 crayon_1.4.1     
[37] withr_2.5.0       later_1.1.0.1     grid_4.0.5        xtable_1.8-4     
[41] jsonlite_1.7.2    gtable_0.3.0      lifecycle_1.0.0   git2r_0.28.0     
[45] magrittr_2.0.1    zip_2.2.0         cli_3.3.0         stringi_1.5.3    
[49] farver_2.1.0      fs_1.5.0          promises_1.2.0.1  xml2_1.3.2       
[53] bslib_0.2.4       ellipsis_0.3.2    generics_0.1.0    vctrs_0.4.1      
[57] tools_4.0.5       glue_1.6.2        tweenr_1.0.2      purrr_0.3.4      
[61] crosstalk_1.1.1   hms_1.0.0         processx_3.5.1    fastmap_1.1.0    
[65] yaml_2.2.1        colorspace_2.0-0  rvest_1.0.0       knitr_1.37       
[69] sass_0.3.1