Analysis of 10 GTEx genes

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Last updated: 2021-11-12

Checks: 7 0

Knit directory: mr_mash_test/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: up-to-date

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Environment: empty

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Seed: set.seed(20200328)

The command set.seed(20200328) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

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Cache: none

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File paths: relative

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Repository version: 759c3a5

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The results in this page were generated with repository version 759c3a5. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015269.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015270.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015295.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015296.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015503.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015811.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015813.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027636.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027637.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027638.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027638.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027639.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027639.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027640.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027640.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027641.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027641.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027642.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027642.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027643.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027643.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027644.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027644.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027645.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027645.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027646.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027646.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028247.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028247.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028248.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028248.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028249.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028249.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028250.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028250.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028251.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028251.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028252.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028252.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028253.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028253.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028254.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028254.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028255.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028255.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028256.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028256.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028298.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028298.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028299.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028299.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028300.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028300.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028301.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028301.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028302.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028302.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028303.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028303.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028304.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028304.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028305.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028305.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028306.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028306.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028307.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028307.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021443.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021443.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021444.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021444.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021445.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021445.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021446.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021446.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021447.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021447.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021448.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021448.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021449.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021449.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021450.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021450.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021451.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021451.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021452.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021452.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021754.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021754.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021755.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021755.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021756.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021756.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021757.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021757.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021758.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021758.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021779.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021779.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021780.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021780.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021781.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021781.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021782.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021782.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021783.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021783.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022047.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022047.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022048.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022048.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022049.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022049.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022050.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022050.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022051.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022051.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022052.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022052.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022053.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022053.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022054.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022054.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022055.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022055.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022056.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022056.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022357.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022357.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022358.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022358.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022359.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022359.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022360.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022360.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022361.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022361.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022382.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022382.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022383.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022383.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022384.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022384.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022385.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022385.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022386.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022386.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022519.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022519.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022520.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022520.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022521.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022521.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022522.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022522.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022523.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022523.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022524.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022524.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022525.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022525.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022833.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024031.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024032.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024033.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024034.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024110.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024111.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024112.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024112.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024113.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024113.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024114.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024114.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318547.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318547.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318567.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318567.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322126.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322126.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322461.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322461.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6401917.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6401917.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6433374.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6433374.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6449097.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6449097.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6450584.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6192054.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6192054.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6192082.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6193059.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6194214.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6219626.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6219626.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007804.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007804.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007805.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007805.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007806.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007807.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007807.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007808.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007808.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007809.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031577.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031653.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031654.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031655.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031656.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031657.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032021.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032022.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032023.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032024.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032024.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032025.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032026.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032027.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032028.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032029.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032030.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032331.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032332.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032333.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032334.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032335.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032757.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032758.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_lowPVE_pipeline.6342504.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_lowPVE_pipeline.6355751.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012643.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012644.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012644.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012645.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012645.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012646.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012646.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012647.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012647.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012648.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012648.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012649.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012649.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012650.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012650.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012651.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012651.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012652.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012652.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012653.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012653.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012654.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012654.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012655.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012655.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012656.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012656.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012657.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012657.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012658.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012658.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012659.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012659.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012660.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012660.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012661.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012661.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012662.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012662.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013263.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013263.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013264.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013264.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013265.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013265.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013266.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013266.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013267.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013267.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013268.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013268.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013269.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013269.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013270.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013270.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013271.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013271.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013272.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013272.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013313.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013313.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013314.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013314.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013315.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013315.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013316.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013316.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013317.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013317.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013318.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013318.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013319.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013319.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013320.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013320.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013321.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013321.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013322.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013322.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013746.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013746.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013747.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013747.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013748.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013748.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013749.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013749.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013750.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013750.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013751.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013751.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013752.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013752.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013753.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013753.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013754.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013754.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013755.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013755.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013758.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013758.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013759.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013759.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013760.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013760.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013761.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013761.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013762.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013762.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013763.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013763.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013764.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013764.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013765.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013765.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013766.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013766.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013767.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013767.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014434.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014434.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014435.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014435.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014436.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014436.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014437.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014437.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014438.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014438.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014439.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014439.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014440.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014440.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014441.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014441.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014442.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014442.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014443.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014443.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014486.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014486.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014487.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014487.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014488.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014488.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014489.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014489.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014490.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014490.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014491.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014491.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014492.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014492.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014493.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014493.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014494.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014494.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014495.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014495.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036253.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036253.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036254.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036254.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036255.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036255.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036256.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036256.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036257.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036257.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036259.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036259.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036260.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036260.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036261.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036261.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1039961.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1039962.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1039963.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040610.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040611.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040612.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040613.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040613.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040614.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040614.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040615.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040615.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040616.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040616.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040617.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040617.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040618.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040619.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040620.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040621.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040622.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040623.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040624.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040629.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041234.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041239.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041240.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041265.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041265.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041315.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041317.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041318.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041321.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041322.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041323.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6372840.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6382984.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6382984.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6400810.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6400810.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_pipeline.6225970.err
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    Ignored:    scripts/mvreg_all_genes_prior_corrX_indepV_sharedB_2blocksr10_pipeline.5297178.err
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    Ignored:    scripts/mvreg_all_genes_prior_highcorrX_indepV_sharedB_2blocksr10_pipeline.5305725.err
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    Ignored:    scripts/mvreg_all_genes_prior_indepX_indepV_B_1causalrespr10_bigtestset_pipeline.5867284.err
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---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/results_gtex_10genes.Rmd) and HTML (docs/results_gtex_10genes.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	759c3a5	Fabio Morgante	2021-11-12	Add description and fix a few things
html	5240e1c	Fabio Morgante	2021-11-12	Build site.
Rmd	164147e	Fabio Morgante	2021-11-12	Test new results documents

---

###Set options
options(stringsAsFactors=FALSE)

###Load libraries
library(cowplot)
library(ggplot2)

###Function to compute accuracy
compute_accuracy <- function(Y, Yhat) {
  bias <- rep(as.numeric(NA), ncol(Y))
  names(bias) <- colnames(Y)
  r2 <- rep(as.numeric(NA), ncol(Y))
  names(r2) <- colnames(Y)
  scaled_rmse <- rep(as.numeric(NA), ncol(Y))
  names(scaled_rmse) <- colnames(Y)
  
  for(i in 1:ncol(Y)){ 
    dat <- na.omit(data.frame(Y[, i], Yhat[, i]))
    colnames(dat) <- c("Y", "Yhat")
    
    fit  <- lm(Y ~ Yhat, data=dat)
    bias[i] <- coef(fit)[2] 
    r2[i] <- summary(fit)$r.squared
    scaled_rmse[i] <- sqrt(mean((dat$Y - dat$Yhat)^2))/sd(dat$Y)
  }
  
  return(list(bias=bias, r2=r2, scaled_rmse=scaled_rmse))
}

###Genes to be analyzed
genes <- c("ENSG00000083812.11", "ENSG00000156413.13", "ENSG00000171119.2",
           "ENSG00000198131.13", "ENSG00000214626.2", "ENSG00000268201.1",
       "ENSG00000268866.1", "ENSG00000269794.1", "ENSG00000269855.2",
       "ENSG00000273901.1")

###Set some parameters
thresh <- 100

Here, we compare the prediction performance of mr.mash, Abhishek’s implementation of the sparse multi-task LASSO, and the univariate elastic net. The analysis was performed on 10 randomly sampled GTEx v8 genes using the following pipelines:

• univariate summary statistics computation
• data-driven covariance matrices computation
• prior grid computation
• mr.mash model fitting
• sparse multi-task LASSO model fitting

Briefly, we used a 5-fold cross validation scheme, whereby all the steps but the computation of prediction performance were done on the training set. Only data-driven covariance matrices were used and computed using flash (unconstrained and non-negative factors only) and PCA, denoised using the TED method in the udr R package. A common grid of scaling factors for all the genes was computed from their univariate summary statistics. These two steps used all the GTEx genes expressed in all the 49 tissues. Regression coefficients and prior weights were initialized using the univariate elastic net. Prior weights were updated in a gene specific manner, as was the residual covariance V with no diagonal constrain. We also tested a “second pass” version of mr.mash where we combined the responsibilities from the “first pass” across genes and performed a joint weights update. The jointly updated weights were fixed for all the genes. Prediction performance was evaluated as the Root Mean Squared Error (RMSE) scaled by the variance of true expression in the test set. The plots below show the mean RMSE across folds for each tissue for pairs of methods.

p_mrmash_sec <- vector("list", length(genes))
p_enet <- vector("list", length(genes))
p_mtlasso <- vector("list", length(genes))

t <- 0

for(gene in genes){

    t <- t+1

    ###Load the data
    dat1_first <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_1/", gene, ".GTEx_V8_fold_1_batch_1_mrmash.first_pass.rds"))
    dat2_first <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_2/", gene, ".GTEx_V8_fold_2_batch_1_mrmash.first_pass.rds"))
    dat3_first <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_3/", gene, ".GTEx_V8_fold_3_batch_1_mrmash.first_pass.rds"))
    dat4_first <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_4/", gene, ".GTEx_V8_fold_4_batch_1_mrmash.first_pass.rds"))
    dat5_first <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_5/", gene, ".GTEx_V8_fold_5_batch_1_mrmash.first_pass.rds"))

    dat1_sec <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_1/", gene, ".GTEx_V8_fold_1_batch_1_mrmash.second_pass.rds"))
    dat2_sec <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_2/", gene, ".GTEx_V8_fold_2_batch_1_mrmash.second_pass.rds"))
    dat3_sec <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_3/", gene, ".GTEx_V8_fold_3_batch_1_mrmash.second_pass.rds"))
    dat4_sec <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_4/", gene, ".GTEx_V8_fold_4_batch_1_mrmash.second_pass.rds"))
    dat5_sec <- readRDS(paste0("output/gtex_mr_mash_analysis/prediction/fold_5/", gene, ".GTEx_V8_fold_5_batch_1_mrmash.second_pass.rds"))

    dat1_mtlasso <- readRDS(paste0("output/gtex_mr_mash_analysis/mtlasso/fold_1/", gene, ".GTEx_V8_fold_1_mtlasso.rds"))
    dat2_mtlasso <- readRDS(paste0("output/gtex_mr_mash_analysis/mtlasso/fold_2/", gene, ".GTEx_V8_fold_2_mtlasso.rds"))
    dat3_mtlasso <- readRDS(paste0("output/gtex_mr_mash_analysis/mtlasso/fold_3/", gene, ".GTEx_V8_fold_3_mtlasso.rds"))
    dat4_mtlasso <- readRDS(paste0("output/gtex_mr_mash_analysis/mtlasso/fold_4/", gene, ".GTEx_V8_fold_4_mtlasso.rds"))
    dat5_mtlasso <- readRDS(paste0("output/gtex_mr_mash_analysis/mtlasso/fold_5/", gene, ".GTEx_V8_fold_5_mtlasso.rds"))

    dat_input <- readRDS(paste0("data/cis_eqtl_analysis_ready/", gene, ".GTEx_V8.rds"))

    sample_size <- apply(dat_input$y_res, 2, function(x){sum(!is.na(x))})
    sample_size <- data.frame(tissue=names(sample_size), sample_size)

    ###enet accuracy
    acc_enet1 <- compute_accuracy(dat1_first$Ytest, dat1_first$Yhat_test_glmnet)
    r2_enet1 <- acc_enet1$r2
    scaled_rmse_enet1 <- acc_enet1$scaled_rmse

    acc_enet2 <- compute_accuracy(dat2_first$Ytest, dat2_first$Yhat_test_glmnet)
    r2_enet2 <- acc_enet2$r2
    scaled_rmse_enet2 <- acc_enet2$scaled_rmse

    acc_enet3 <- compute_accuracy(dat3_first$Ytest, dat3_first$Yhat_test_glmnet)
    r2_enet3 <- acc_enet3$r2
    scaled_rmse_enet3 <- acc_enet3$scaled_rmse

    acc_enet4 <- compute_accuracy(dat4_first$Ytest, dat4_first$Yhat_test_glmnet)
    r2_enet4 <- acc_enet4$r2
    scaled_rmse_enet4 <- acc_enet4$scaled_rmse

    acc_enet5 <- compute_accuracy(dat5_first$Ytest, dat5_first$Yhat_test_glmnet)
    r2_enet5 <- acc_enet5$r2
    scaled_rmse_enet5 <- acc_enet5$scaled_rmse

    r2_enet <- cbind(r2_enet1, r2_enet2, r2_enet3, r2_enet4, r2_enet5)
    scaled_rmse_enet <- cbind(scaled_rmse_enet1, scaled_rmse_enet2, scaled_rmse_enet3, scaled_rmse_enet4, scaled_rmse_enet5)

    ###mr.mash first pass accuracy
    acc_mrmash1 <- compute_accuracy(dat1_first$Ytest, dat1_first$Yhat_test)
    r2_mrmash1 <- acc_mrmash1$r2
    scaled_rmse_mrmash1 <- acc_mrmash1$scaled_rmse

    acc_mrmash2 <- compute_accuracy(dat2_first$Ytest, dat2_first$Yhat_test)
    r2_mrmash2 <- acc_mrmash2$r2
    scaled_rmse_mrmash2 <- acc_mrmash2$scaled_rmse

    acc_mrmash3 <- compute_accuracy(dat3_first$Ytest, dat3_first$Yhat_test)
    r2_mrmash3 <- acc_mrmash3$r2
    scaled_rmse_mrmash3 <- acc_mrmash3$scaled_rmse

    acc_mrmash4 <- compute_accuracy(dat4_first$Ytest, dat4_first$Yhat_test)
    r2_mrmash4 <- acc_mrmash4$r2
    scaled_rmse_mrmash4 <- acc_mrmash4$scaled_rmse

    acc_mrmash5 <- compute_accuracy(dat5_first$Ytest, dat5_first$Yhat_test)
    r2_mrmash5 <- acc_mrmash5$r2
    scaled_rmse_mrmash5 <- acc_mrmash5$scaled_rmse

    r2_mrmash_first <- cbind(r2_mrmash1, r2_mrmash2, r2_mrmash3, r2_mrmash4, r2_mrmash5)
    scaled_rmse_mrmash_first <- cbind(scaled_rmse_mrmash1, scaled_rmse_mrmash2, scaled_rmse_mrmash3, scaled_rmse_mrmash4, scaled_rmse_mrmash5)

    ###mr.mash second pass accuracy
    acc_mrmash1 <- compute_accuracy(dat1_sec$Ytest, dat1_sec$Yhat_test)
    r2_mrmash1 <- acc_mrmash1$r2
    scaled_rmse_mrmash1 <- acc_mrmash1$scaled_rmse

    acc_mrmash2 <- compute_accuracy(dat2_sec$Ytest, dat2_sec$Yhat_test)
    r2_mrmash2 <- acc_mrmash2$r2
    scaled_rmse_mrmash2 <- acc_mrmash2$scaled_rmse

    acc_mrmash3 <- compute_accuracy(dat3_sec$Ytest, dat3_sec$Yhat_test)
    r2_mrmash3 <- acc_mrmash3$r2
    scaled_rmse_mrmash3 <- acc_mrmash3$scaled_rmse

    acc_mrmash4 <- compute_accuracy(dat4_sec$Ytest, dat4_sec$Yhat_test)
    r2_mrmash4 <- acc_mrmash4$r2
    scaled_rmse_mrmash4 <- acc_mrmash4$scaled_rmse

    acc_mrmash5 <- compute_accuracy(dat5_sec$Ytest, dat5_sec$Yhat_test)
    r2_mrmash5 <- acc_mrmash5$r2
    scaled_rmse_mrmash5 <- acc_mrmash5$scaled_rmse

    r2_mrmash_sec <- cbind(r2_mrmash1, r2_mrmash2, r2_mrmash3, r2_mrmash4, r2_mrmash5)
    scaled_rmse_mrmash_sec <- cbind(scaled_rmse_mrmash1, scaled_rmse_mrmash2, scaled_rmse_mrmash3, scaled_rmse_mrmash4, scaled_rmse_mrmash5)

    ###mtlasso accuracy
    acc_mtlasso1 <- compute_accuracy(dat1_mtlasso$Ytest, dat1_mtlasso$Yhat_test)
    r2_mtlasso1 <- acc_mtlasso1$r2
    scaled_rmse_mtlasso1 <- acc_mtlasso1$scaled_rmse

    acc_mtlasso2 <- compute_accuracy(dat2_mtlasso$Ytest, dat2_mtlasso$Yhat_test)
    r2_mtlasso2 <- acc_mtlasso2$r2
    scaled_rmse_mtlasso2 <- acc_mtlasso2$scaled_rmse

    acc_mtlasso3 <- compute_accuracy(dat3_mtlasso$Ytest, dat3_mtlasso$Yhat_test)
    r2_mtlasso3 <- acc_mtlasso3$r2
    scaled_rmse_mtlasso3 <- acc_mtlasso3$scaled_rmse

    acc_mtlasso4 <- compute_accuracy(dat4_mtlasso$Ytest, dat4_mtlasso$Yhat_test)
    r2_mtlasso4 <- acc_mtlasso4$r2
    scaled_rmse_mtlasso4 <- acc_mtlasso4$scaled_rmse

    acc_mtlasso5 <- compute_accuracy(dat5_mtlasso$Ytest, dat5_mtlasso$Yhat_test)
    r2_mtlasso5 <- acc_mtlasso5$r2
    scaled_rmse_mtlasso5 <- acc_mtlasso5$scaled_rmse

    r2_mtlasso <- cbind(r2_mtlasso1, r2_mtlasso2, r2_mtlasso3, r2_mtlasso4, r2_mtlasso5)
    scaled_rmse_mtlasso <- cbind(scaled_rmse_mtlasso1, scaled_rmse_mtlasso2, scaled_rmse_mtlasso3, scaled_rmse_mtlasso4, scaled_rmse_mtlasso5)

    ###Combined accuracy

    mean_r2 <- cbind(enet=rowMeans(r2_enet, na.rm=TRUE), mrmash_first=rowMeans(r2_mrmash_first, na.rm=TRUE), 
                     mrmash_sec=rowMeans(r2_mrmash_sec, na.rm=TRUE), mtlasso=rowMeans(r2_mtlasso, na.rm=TRUE))
    se_r2 <- cbind(enet=matrixStats::rowSds(r2_enet, na.rm=TRUE)/apply(r2_enet, 1, function(x){sum(is.finite(x))}), 
                    mrmash_first=matrixStats::rowSds(r2_mrmash_first, na.rm=TRUE)/apply(r2_mrmash_first, 1, function(x){sum(is.finite(x))}),
                    mrmash_sec=matrixStats::rowSds(r2_mrmash_sec, na.rm=TRUE)/apply(r2_mrmash_sec, 1, function(x){sum(is.finite(x))}),
                    mtlasso=matrixStats::rowSds(r2_mtlasso, na.rm=TRUE)/apply(r2_mtlasso, 1, function(x){sum(is.finite(x))}))
                    
    mean_scaled_rmse <- cbind(enet=rowMeans(scaled_rmse_enet, na.rm=TRUE), mrmash_first=rowMeans(scaled_rmse_mrmash_first, na.rm=TRUE), 
                              mrmash_sec=rowMeans(scaled_rmse_mrmash_sec, na.rm=TRUE), mtlasso=rowMeans(scaled_rmse_mtlasso, na.rm=TRUE))
    se_scaled_rmse <- cbind(enet=matrixStats::rowSds(scaled_rmse_enet, na.rm=TRUE)/apply(scaled_rmse_enet, 1, function(x){sum(is.finite(x))}), 
                            mrmash_first=matrixStats::rowSds(scaled_rmse_mrmash_first, na.rm=TRUE)/apply(scaled_rmse_mrmash_first, 1, function(x){sum(is.finite(x))}),
                            mrmash_sec=matrixStats::rowSds(scaled_rmse_mrmash_sec, na.rm=TRUE)/apply(scaled_rmse_mrmash_sec, 1, function(x){sum(is.finite(x))}),
                            mtlasso=matrixStats::rowSds(scaled_rmse_mtlasso, na.rm=TRUE)/apply(scaled_rmse_mtlasso, 1, function(x){sum(is.finite(x))}))
    
    ###Plots
    min_lim <- min(c(mean_scaled_rmse[, "mrmash_first"], mean_scaled_rmse[, "mrmash_sec"]))
    max_lim <- max(c(mean_scaled_rmse[, "mrmash_first"], mean_scaled_rmse[, "mrmash_sec"]))
    p_mrmash_sec[[t]] <- ggplot(as.data.frame(mean_scaled_rmse), aes(x=mrmash_sec, y=mrmash_first)) + geom_point(shape=1) + xlim(min_lim, max_lim) + ylim(min_lim, max_lim) +
                                labs(x = "mr.mash (second)", y = "mr.mash (first)", title=gene) + geom_abline(intercept = 0, slope = 1) + theme_cowplot() +
                                theme(plot.title = element_text(hjust = 0.5))    

    min_lim <- min(c(mean_scaled_rmse[, "mrmash_first"], mean_scaled_rmse[, "enet"]))
    max_lim <- max(c(mean_scaled_rmse[, "mrmash_first"], mean_scaled_rmse[, "enet"]))
    p_enet[[t]] <- ggplot(as.data.frame(mean_scaled_rmse), aes(x=enet, y=mrmash_first)) + geom_point(shape=1) + xlim(min_lim, max_lim) + ylim(min_lim, max_lim) +
                    labs(x = "e-net", y = "mr.mash", title=gene) + geom_abline(intercept = 0, slope = 1) + theme_cowplot() +
                    theme(plot.title = element_text(hjust = 0.5))    

    min_lim <- min(c(mean_scaled_rmse[, "mrmash_first"], mean_scaled_rmse[, "mtlasso"]))
    max_lim <- max(c(mean_scaled_rmse[, "mrmash_first"], mean_scaled_rmse[, "mtlasso"]))
    p_mtlasso[[t]] <- ggplot(as.data.frame(mean_scaled_rmse), aes(x=mtlasso, y=mrmash_first)) + geom_point(shape=1) + xlim(min_lim, max_lim) + ylim(min_lim, max_lim) +
                        labs(x = "smt-lasso", y = "mr.mash", title=gene) + geom_abline(intercept = 0, slope = 1) + theme_cowplot() +
                        theme(plot.title = element_text(hjust = 0.5))    
}

mr.mash first pass vs second pass

plot_grid(p_mrmash_sec[[1]], p_mrmash_sec[[2]], p_mrmash_sec[[3]], p_mrmash_sec[[4]], p_mrmash_sec[[5]],
          p_mrmash_sec[[6]], p_mrmash_sec[[7]], p_mrmash_sec[[8]], p_mrmash_sec[[9]], NULL, 
          p_mrmash_sec[[10]], NULL,
          ncol = 3)

Past versions of "mr.mash first vs second pass-1.png"

Version	Author	Date
5240e1c	Fabio Morgante	2021-11-12

The results comparing the two versions of mr.mash show that the second pass does not improve the performance. Since it is also computationally demanding to perform the second pass, there is no reason to do it.

mr.mash first pass vs elastic net

plot_grid(p_enet[[1]], p_enet[[2]], p_enet[[3]], p_enet[[4]], p_enet[[5]],
          p_enet[[6]], p_enet[[7]], p_enet[[8]], p_enet[[9]], NULL,
          p_enet[[10]], NULL,
          ncol = 3)

Past versions of "mr.mash first vs enet-1.png"

Version	Author	Date
5240e1c	Fabio Morgante	2021-11-12

The results comparing mr.mash and univariate elastic net show that, as expected, mr.mash achieves a lower RMSE for the majority of tissue/gene combinations. And even in the cases where the elastic net achieves a lower RMSE, mr.mash’s performance is very close.

mr.mash first pass vs sparse multi-task LASSO

plot_grid(p_mtlasso[[1]], p_mtlasso[[2]], p_mtlasso[[3]], p_mtlasso[[4]], p_mtlasso[[5]],
          p_mtlasso[[6]], p_mtlasso[[7]], p_mtlasso[[8]], p_mtlasso[[9]], NULL,
          p_mtlasso[[10]], NULL,
          ncol = 3)

Past versions of "mr.mash first vs mtlasso-1.png"

Version	Author	Date
5240e1c	Fabio Morgante	2021-11-12

The results comparing mr.mash and sparse multi-task LASSO show that mr.mash performs better for five out of ten genes, and about the same in the remaining genes.

Overall, mr.mash seems to work well.

Session information

sessionInfo()

R version 4.0.3 (2020-10-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: CentOS Linux 8

Matrix products: default
BLAS/LAPACK: /scratch/midway3/fmorgante/miniconda3/envs/py38dsc/lib/libopenblasp-r0.3.12.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggplot2_3.3.3 cowplot_1.1.1

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6         highr_0.8          pillar_1.6.0       compiler_4.0.3    
 [5] later_1.1.0.1      git2r_0.28.0       workflowr_1.6.2    tools_4.0.3       
 [9] digest_0.6.27      evaluate_0.14      lifecycle_1.0.0    tibble_3.1.0      
[13] gtable_0.3.0       pkgconfig_2.0.3    rlang_0.4.10       yaml_2.2.1        
[17] xfun_0.22          withr_2.4.1        stringr_1.4.0      dplyr_1.0.5       
[21] knitr_1.32         generics_0.1.0     fs_1.5.0           vctrs_0.3.7       
[25] tidyselect_1.1.0   rprojroot_2.0.2    grid_4.0.3         glue_1.4.2        
[29] R6_2.5.0           fansi_0.4.2        rmarkdown_2.7      farver_2.1.0      
[33] purrr_0.3.4        magrittr_2.0.1     whisker_0.4        matrixStats_0.58.0
[37] scales_1.1.1       promises_1.2.0.1   ellipsis_0.3.1     htmltools_0.5.1.1 
[41] colorspace_2.0-0   httpuv_1.5.5       labeling_0.4.2     utf8_1.2.1        
[45] stringi_1.5.3      munsell_0.5.0      crayon_1.4.1