Analysis of 1000 GTEx genes

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Last updated: 2022-05-10

Checks: 7 0

Knit directory: mr_mash_test/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: up-to-date

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Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20200328)

The command set.seed(20200328) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

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Cache: none

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File paths: relative

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Repository version: ca2b058

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The results in this page were generated with repository version ca2b058. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1014889.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015503.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_B_1causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sB_1causalrespr10_indepReps_pipeline_array.1015811.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027635.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027636.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027637.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027637.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027638.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027638.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027639.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027639.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027640.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027640.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027641.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027641.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027642.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027642.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027643.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027643.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027644.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027644.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027645.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027645.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027646.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1027646.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028247.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028247.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028248.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028248.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028249.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028249.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028250.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028250.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028251.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028251.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028252.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028252.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028253.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028253.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028254.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028254.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028255.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028255.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028256.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028256.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028298.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028298.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028299.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028299.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028300.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028300.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028301.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028301.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028302.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028302.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028303.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028303.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028304.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028304.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028305.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028305.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028306.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028306.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028307.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_missing_Y_pipeline_array.1028307.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021443.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021443.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021444.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021444.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021445.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021445.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021446.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021446.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021447.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021447.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021448.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021448.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021449.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021449.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021450.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021450.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021451.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021451.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021452.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021452.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021754.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021754.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021755.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021755.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021756.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021756.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021757.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021757.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021758.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021758.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021779.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021779.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021780.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021780.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021781.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021781.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021782.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021782.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021783.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1021783.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022047.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022047.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022048.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022048.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022049.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022049.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022050.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022050.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022051.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022051.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022052.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022052.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022053.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022053.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022054.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022054.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022055.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022055.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022056.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022056.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022357.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022357.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022358.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022358.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022359.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022359.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022360.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022360.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022361.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022361.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022382.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022382.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022383.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022383.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022384.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022384.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022385.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022385.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022386.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022386.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022519.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022519.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022520.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022520.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022521.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022521.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022522.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022522.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022523.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022523.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022524.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022524.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022832.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1022833.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024029.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024031.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024032.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024033.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024034.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024034.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024110.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024110.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024111.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024111.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024112.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024112.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024113.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024113.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024114.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_indepReps_pipeline_array.1024114.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318547.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318547.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318567.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6318567.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322126.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322126.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322461.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6322461.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6401917.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6401917.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6433374.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6433374.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6449097.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6449097.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_lowPVE_pipeline.6450584.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6192054.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6192054.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6192082.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6193059.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6194214.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6219626.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_indepB_r10_pipeline.6219626.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007804.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007804.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007805.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007805.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007806.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007806.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007807.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007807.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_2blocksr10_diffPVE_indepReps_missing_Y_pipeline_array.1007808.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031577.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031653.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031654.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031655.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031656.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1031657.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032021.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032022.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032023.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032024.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032025.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032026.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032027.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032028.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032029.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032030.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032331.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032334.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032335.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032756.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_indepReps_pipeline_array.1032757.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_lowPVE_pipeline.6342504.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_3causalrespr10_lowPVE_pipeline.6342504.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012643.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012644.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012644.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012645.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012645.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012646.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012646.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012647.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012647.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012648.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012648.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012649.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012649.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012650.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012650.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012651.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012652.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012653.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012654.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012655.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012656.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012657.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012657.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012658.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012658.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012659.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012659.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012660.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012660.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012661.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012661.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012662.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1012662.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013263.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013263.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013264.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013264.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013265.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013265.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013266.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013266.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013267.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013267.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013268.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013268.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013269.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013269.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013270.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013270.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013271.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013271.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013272.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013272.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013313.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013313.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013314.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013314.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013315.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013315.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013316.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013316.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013317.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013317.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013318.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013318.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013319.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013319.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013320.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013320.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013321.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013321.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013322.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013322.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013746.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013746.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013747.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013747.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013748.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013748.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013749.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013749.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013750.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013750.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013751.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013751.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013752.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013752.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013753.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013753.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013754.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013754.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013755.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013755.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013758.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013758.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013759.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013759.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013760.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013760.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013761.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013761.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013762.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013762.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013763.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013763.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013764.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013764.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013765.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013765.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013766.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013766.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013767.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1013767.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014434.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014434.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014435.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014435.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014436.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014436.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014437.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014437.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014438.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014438.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014439.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014439.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014440.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014440.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014441.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014441.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014442.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014442.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014443.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014443.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014486.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014486.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014487.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014487.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014488.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014488.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014489.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014489.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014490.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014490.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014491.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014491.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014492.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014492.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014493.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014493.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014494.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014494.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014495.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_missing_Y_pipeline_array.1014495.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036253.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036253.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036254.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036254.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036255.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036255.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036256.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036256.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036257.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036257.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036259.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1036259.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040612.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040613.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040614.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040615.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040616.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040618.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040628.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1040629.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041231.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041232.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041233.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041233.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041234.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041235.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041236.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041236.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041237.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041237.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041238.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041238.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041239.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041239.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041240.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041240.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041264.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041264.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041265.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041265.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041266.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041266.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041267.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041271.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041273.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041314.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041315.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041315.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041316.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041316.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041317.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041317.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041318.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041318.out
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041319.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041320.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041320.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041321.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041321.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041322.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041322.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041323.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_indepReps_pipeline_array.1041323.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6372840.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6372840.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6372856.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6372856.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6373601.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6373601.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6373615.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6373615.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6382984.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6382984.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6400810.err
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_lowPVE_pipeline.6400810.out
    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_pipeline.6225970.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_pipeline.6226041.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_pipeline.6228446.err
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    Ignored:    scripts/mvreg_all_genes_prior_GTExrealX_indepV_sharedB_r10_pipeline.6228985.err
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    Ignored:    scripts/mvreg_all_genes_prior_corrX_indepV_sharedB_2blocksr10_pipeline.5297178.err
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    Ignored:    scripts/mvreg_all_genes_prior_corrX_indepV_sharedB_2blocksr10_pipeline.5297184.err
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    Ignored:    scripts/mvreg_all_genes_prior_highcorrX_indepV_sharedB_2blocksr10_pipeline.5305725.err
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    Ignored:    scripts/mvreg_all_genes_prior_highcorrX_indepV_sharedB_2blocksr10_pipeline.5305727.err
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    Ignored:    scripts/mvreg_all_genes_prior_highcorrX_indepV_sharedB_2blocksr10_pipeline.5308354.err
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    Ignored:    scripts/mvreg_all_genes_prior_highcorrX_indepV_sharedB_2blocksr10_pipeline.5309181.err
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    Ignored:    scripts/mvreg_all_genes_prior_highcorrX_indepV_sharedB_2blocksr10_pipeline.5310380.err
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    Ignored:    scripts/mvreg_all_genes_prior_indepX_indepV_B_1causalrespr10_bigtestset_pipeline.5867284.err
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    Ignored:    scripts/mvreg_all_genes_prior_indepX_indepV_B_1causalrespr10_bigtestset_pipeline.5870492.err
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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/results_gtex_1000genes.Rmd) and HTML (docs/results_gtex_1000genes.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	ca2b058	Fabio Morgante	2022-05-10	Fix plotting area
html	76f4680	Fabio Morgante	2022-05-10	Build site.
Rmd	ed3f0ab	Fabio Morgante	2022-05-10	Update summary of gtex results
html	cddd2d7	Fabio Morgante	2021-11-27	Build site.
Rmd	f9ea8b1	Fabio Morgante	2021-11-27	Add summary of the results
html	b9f7d67	Fabio Morgante	2021-11-27	Build site.
Rmd	bcdfd4c	Fabio Morgante	2021-11-27	Minor improvement
html	b8589a5	Fabio Morgante	2021-11-27	Build site.
Rmd	2f271b0	Fabio Morgante	2021-11-27	Revert some changes
html	4d7c1f2	Fabio Morgante	2021-11-27	Build site.
Rmd	5bc4936	Fabio Morgante	2021-11-27	A few improvements
html	ef0d723	Fabio Morgante	2021-11-27	Build site.
Rmd	b3d3a6c	Fabio Morgante	2021-11-27	Fix bugs
html	9db563c	Fabio Morgante	2021-11-27	Build site.
Rmd	aa729d6	Fabio Morgante	2021-11-27	Fix typo
html	b382d6d	Fabio Morgante	2021-11-24	Build site.
Rmd	adf3f67	Fabio Morgante	2021-11-24	A couple of improvements
html	38c5a01	Fabio Morgante	2021-11-24	Build site.
Rmd	6c6d4b4	Fabio Morgante	2021-11-24	Fix a bug
html	0eb33fd	Fabio Morgante	2021-11-24	Build site.
Rmd	03602d2	Fabio Morgante	2021-11-24	Fix another bug

---

###Set options and load libraries
options(stringsAsFactors = FALSE)

library(ggplot2)
library(cowplot)
library(dplyr)
library(matrixStats)
library(reshape2)

dir <- "output/gtex_mr_mash_analysis/prediction_score"
suffix <- "GTEx_V8_score"
manifest <- read.table("data/gtex-v8-manifest-2ormore-tissues-nopath-nosuffix-batch1.txt", header=FALSE)

Here, we compare the prediction performance of mr.mash and the univariate elastic net. The analysis was performed on 1000 randomly sampled GTEx v8 genes using the following pipelines:

• univariate summary statistics computation
• data-driven covariance matrices computation
• prior grid computation
• mr.mash model fitting

Briefly, we used a 5-fold cross validation scheme, whereby all the steps but the computation of prediction performance were done on the training set. Only data-driven covariance matrices were used and computed using flash (unconstrained and non-negative factors only) and PCA, denoised using the TED method in the udr R package. A common grid of scaling factors for all the genes was computed from their univariate summary statistics. These two steps used all the GTEx genes expressed in all the 49 tissues. Regression coefficients and prior weights were initialized using the univariate elastic net. Prior weights were updated in a gene specific manner, as was the residual covariance V with no diagonal constrain. We also tested a “second pass” version of mr.mash where we combined the responsibilities from the “first pass” across genes and performed a joint weights update. The jointly updated weights were fixed for all the genes. However, this approach did not improve the performance of mr.mash and was pursued here. Prediction performance was evaluated as the Root Mean Squared Error (RMSE) of the predictions of the two methods scaled by the RMSE of using the mean of the true expression in the training set as a naive predictor. The histograms and boxplots below show the difference of this metric between mr.mash and elastic net – thus, negative values indicate that mr.mash performs better.

###Create data frames to store the results
rmse_enet <- data.frame()
rmse_mrmash <- data.frame()

###Loop through genes in the manifest
for(i in 1:nrow(manifest)){
  ##Load scores data
  gene <- manifest[i,]
  dat <- readRDS(paste0(dir, "/", gene, ".", suffix, ".rds"))
  
  if(!is.null(dat)){
    ##Reshape scaled RMSE results
    rmse_enet_1 <- data.frame(matrix(dat$mean_scaled_rmse$enet, nrow=1))
    rmse_mrmash_1 <- data.frame(matrix(dat$mean_scaled_rmse$mrmash_first, nrow=1))
    colnames(rmse_enet_1) <- colnames(rmse_mrmash_1) <- dat$mean_scaled_rmse$tissue
    
    ##Add current results to the data frame
    rmse_enet <- bind_rows(rmse_enet, rmse_enet_1)
    rmse_mrmash <- bind_rows(rmse_mrmash, rmse_mrmash_1)
  } else {
    message(gene, " has an empty score file.")
  }
}

###Compute difference in RMSE between mr.mash and enet
rmse_diff <- as.matrix(rmse_mrmash) - as.matrix(rmse_enet)
rmse_diff_pooled <- data.frame(RMSE_diff=c(rmse_diff))

Histograms

Pooled across tissues

p_pooled <- ggplot(rmse_diff_pooled, aes(x=RMSE_diff)) + geom_histogram() + labs(x = "Difference in error between mr.mash and enet") + theme_cowplot(font_size = 20)
p_pooled

Past versions of "hist pooled tissues-1.png"

Version	Author	Date
76f4680	Fabio Morgante	2022-05-10

summary(rmse_diff_pooled[, 1])

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
 -0.203  -0.017  -0.006  -0.010   0.000   0.103   12823 

By tissue

p_single <- vector("list", ncol(rmse_diff))
sumstats <- c()
for(j in 1:ncol(rmse_diff)){
    rmse_diff_j <- data.frame(RMSE_diff=rmse_diff[, j])
    p_single[[j]] <- ggplot(rmse_diff_j, aes(x=RMSE_diff)) + geom_histogram() + labs(x = "Difference in error between mr.mash and enet", title=colnames(rmse_diff)[j]) + theme_cowplot() + theme(plot.title = element_text(hjust = 0.5))
    sumstats <- rbind(sumstats, summary(rmse_diff[, j]))
}

plot_grid(p_single[[1]], p_single[[2]], p_single[[3]], p_single[[4]], p_single[[5]],
          p_single[[6]], p_single[[7]], p_single[[8]], p_single[[9]], NULL, 
          p_single[[10]], NULL,
          ncol = 3)

Past versions of "hist by tissue-1.png"

Version	Author	Date
76f4680	Fabio Morgante	2022-05-10

plot_grid(p_single[[11]], p_single[[12]], p_single[[13]], p_single[[14]], p_single[[15]],
          p_single[[16]], p_single[[17]], p_single[[18]], p_single[[19]], NULL,
          p_single[[20]], NULL,
          ncol = 3)

Past versions of "hist by tissue-2.png"

Version	Author	Date
76f4680	Fabio Morgante	2022-05-10

plot_grid(p_single[[21]], p_single[[22]], p_single[[23]], p_single[[24]], p_single[[25]],
          p_single[[26]], p_single[[27]], p_single[[28]], p_single[[29]], NULL, 
          p_single[[30]], NULL,
          ncol = 3)

Past versions of "hist by tissue-3.png"

Version	Author	Date
76f4680	Fabio Morgante	2022-05-10

plot_grid(p_single[[31]], p_single[[32]], p_single[[33]], p_single[[34]], p_single[[35]],
          p_single[[36]], p_single[[37]], p_single[[38]], p_single[[39]], NULL,
          p_single[[40]], NULL,
          ncol = 3)

Past versions of "hist by tissue-4.png"

Version	Author	Date
76f4680	Fabio Morgante	2022-05-10

plot_grid(p_single[[41]], p_single[[42]], p_single[[43]], p_single[[44]], p_single[[45]],
          p_single[[46]], p_single[[47]], NULL, p_single[[48]],
          ncol = 3)

Past versions of "hist by tissue-5.png"

Version	Author	Date
76f4680	Fabio Morgante	2022-05-10

rownames(sumstats) <- colnames(rmse_diff)
sumstats

                                             Min.      1st Qu.       Median
Adipose_Subcutaneous                  -0.03453803 -0.010015927 -0.004782696
Adipose_Visceral_Omentum              -0.07130170 -0.012975634 -0.005943071
Adrenal_Gland                         -0.09114687 -0.018710859 -0.007188985
Artery_Aorta                          -0.05404732 -0.014308542 -0.006276417
Artery_Coronary                       -0.09690506 -0.020783338 -0.008853875
Artery_Tibial                         -0.03728780 -0.009272438 -0.003112077
Brain_Amygdala                        -0.20284448 -0.029688504 -0.010318339
Brain_Anterior_cingulate_cortex_BA24  -0.12794522 -0.027845902 -0.011814591
Brain_Caudate_basal_ganglia           -0.08585325 -0.022983813 -0.009002455
Brain_Cerebellar_Hemisphere           -0.14742185 -0.026488357 -0.009778317
Brain_Cerebellum                      -0.07400049 -0.019245940 -0.007096140
Brain_Cortex                          -0.09110438 -0.022517652 -0.007941995
Brain_Frontal_Cortex_BA9              -0.14883782 -0.028901602 -0.010287525
Brain_Hippocampus                     -0.13972088 -0.026744788 -0.010683825
Brain_Hypothalamus                    -0.12245087 -0.024990827 -0.010065690
Brain_Nucleus_accumbens_basal_ganglia -0.12570534 -0.021532862 -0.009156264
Brain_Putamen_basal_ganglia           -0.13356774 -0.025615459 -0.010812042
Brain_Spinal_cord_cervical_c-1        -0.12132183 -0.028927116 -0.010674921
Brain_Substantia_nigra                -0.19352177 -0.033506696 -0.011915971
Breast_Mammary_Tissue                 -0.07075928 -0.015310204 -0.006671924
Cells_Cultured_fibroblasts            -0.04299217 -0.009710696 -0.003273027
Cells_EBV-transformed_lymphocytes     -0.14226301 -0.018932027 -0.007288006
Colon_Sigmoid                         -0.07788665 -0.017074759 -0.006843974
Colon_Transverse                      -0.07212045 -0.015128014 -0.006524545
Esophagus_Gastroesophageal_Junction   -0.05896111 -0.017501162 -0.007594497
Esophagus_Mucosa                      -0.04681240 -0.011291700 -0.003870692
Esophagus_Muscularis                  -0.04988346 -0.012854308 -0.005790168
Heart_Atrial_Appendage                -0.05173208 -0.016065840 -0.006289127
Heart_Left_Ventricle                  -0.04815291 -0.013789318 -0.005826798
Liver                                 -0.07620929 -0.014349373 -0.004630923
Lung                                  -0.03473919 -0.010946585 -0.004099860
Minor_Salivary_Gland                  -0.18296890 -0.024645791 -0.009823764
Muscle_Skeletal                       -0.02358072 -0.007457137 -0.002660360
Nerve_Tibial                          -0.04105405 -0.011007684 -0.003953968
Ovary                                 -0.14693362 -0.024409154 -0.009229744
Pancreas                              -0.05640683 -0.014332053 -0.005086783
Pituitary                             -0.08897530 -0.017624242 -0.005967239
Prostate                              -0.09576228 -0.021998402 -0.008028011
Skin_Not_Sun_Exposed_Suprapubic       -0.04497306 -0.011808785 -0.005425292
Skin_Sun_Exposed_Lower_leg            -0.03848212 -0.009477090 -0.003591834
Small_Intestine_Terminal_Ileum        -0.10434229 -0.026706912 -0.011426729
Spleen                                -0.10774435 -0.017527956 -0.007467263
Stomach                               -0.06630646 -0.016283034 -0.006580407
Testis                                -0.05532841 -0.011228618 -0.002380533
Thyroid                               -0.05691660 -0.009055295 -0.002982558
Uterus                                -0.18773312 -0.026970941 -0.011986099
Vagina                                -0.19021513 -0.026430970 -0.009330066
Whole_Blood                           -0.03622241 -0.006117779 -0.001652829
                                              Mean       3rd Qu.       Max.
Adipose_Subcutaneous                  -0.005614178 -6.855818e-04 0.06643376
Adipose_Visceral_Omentum              -0.007416829 -7.754565e-04 0.03214816
Adrenal_Gland                         -0.009970637 -3.957321e-04 0.06638181
Artery_Aorta                          -0.008040668 -7.413325e-04 0.02836028
Artery_Coronary                       -0.012568935 -1.361599e-03 0.05457727
Artery_Tibial                         -0.004471307  6.729192e-05 0.05587884
Brain_Amygdala                        -0.017350780 -2.833030e-04 0.08005610
Brain_Anterior_cingulate_cortex_BA24  -0.016489758 -1.553557e-03 0.10255587
Brain_Caudate_basal_ganglia           -0.013109627 -4.987411e-04 0.05039573
Brain_Cerebellar_Hemisphere           -0.014376983 -5.495054e-04 0.08426775
Brain_Cerebellum                      -0.010134073  2.379602e-05 0.05413213
Brain_Cortex                          -0.012786639 -1.311226e-03 0.07183928
Brain_Frontal_Cortex_BA9              -0.016829609 -1.422388e-03 0.05740487
Brain_Hippocampus                     -0.016328135 -2.009282e-03 0.04256553
Brain_Hypothalamus                    -0.014779082 -1.326882e-03 0.04508524
Brain_Nucleus_accumbens_basal_ganglia -0.012428545 -1.392470e-03 0.04935880
Brain_Putamen_basal_ganglia           -0.015386312 -9.501789e-04 0.06968285
Brain_Spinal_cord_cervical_c-1        -0.016334080 -5.634839e-04 0.06298668
Brain_Substantia_nigra                -0.019225260 -4.210160e-06 0.05846099
Breast_Mammary_Tissue                 -0.008744568 -8.838698e-04 0.06928465
Cells_Cultured_fibroblasts            -0.003981283  4.169507e-04 0.07008614
Cells_EBV-transformed_lymphocytes     -0.010882514  2.460266e-04 0.10236197
Colon_Sigmoid                         -0.009780317 -1.247054e-03 0.04561543
Colon_Transverse                      -0.008553447 -8.084706e-04 0.02881984
Esophagus_Gastroesophageal_Junction   -0.009961891 -1.504868e-03 0.02300569
Esophagus_Mucosa                      -0.005211735  1.564278e-04 0.05796842
Esophagus_Muscularis                  -0.007220124 -4.546049e-04 0.03384951
Heart_Atrial_Appendage                -0.008419654 -9.766566e-04 0.04737967
Heart_Left_Ventricle                  -0.007740458 -7.605024e-04 0.03080717
Liver                                 -0.007467138  7.568326e-04 0.07327033
Lung                                  -0.005570794 -2.198154e-04 0.04993001
Minor_Salivary_Gland                  -0.014318314 -8.122610e-04 0.06226891
Muscle_Skeletal                       -0.003290228  1.428035e-04 0.06260407
Nerve_Tibial                          -0.005223766 -1.818634e-04 0.04225253
Ovary                                 -0.013795137 -2.511859e-04 0.04520676
Pancreas                              -0.007604632 -2.229871e-04 0.04007339
Pituitary                             -0.009074207 -1.558135e-04 0.07286998
Prostate                              -0.012263691 -1.301369e-03 0.07404888
Skin_Not_Sun_Exposed_Suprapubic       -0.006927679 -1.061534e-03 0.02835287
Skin_Sun_Exposed_Lower_leg            -0.004922708 -2.753449e-04 0.03907960
Small_Intestine_Terminal_Ileum        -0.015540079 -1.586642e-03 0.02853394
Spleen                                -0.010211532 -4.263634e-04 0.05456632
Stomach                               -0.010058982 -1.255954e-03 0.04360007
Testis                                -0.003134782  3.356504e-03 0.07271869
Thyroid                               -0.003693764  3.726713e-04 0.05374151
Uterus                                -0.017142800 -2.125576e-03 0.07155467
Vagina                                -0.015439186 -8.362865e-04 0.03988717
Whole_Blood                           -0.002128761  7.416007e-04 0.08931692
                                      NA's
Adipose_Subcutaneous                   264
Adipose_Visceral_Omentum               264
Adrenal_Gland                          281
Artery_Aorta                           281
Artery_Coronary                        265
Artery_Tibial                          296
Brain_Amygdala                         288
Brain_Anterior_cingulate_cortex_BA24   278
Brain_Caudate_basal_ganglia            272
Brain_Cerebellar_Hemisphere            248
Brain_Cerebellum                       247
Brain_Cortex                           271
Brain_Frontal_Cortex_BA9               274
Brain_Hippocampus                      282
Brain_Hypothalamus                     252
Brain_Nucleus_accumbens_basal_ganglia  266
Brain_Putamen_basal_ganglia            298
Brain_Spinal_cord_cervical_c-1         261
Brain_Substantia_nigra                 287
Breast_Mammary_Tissue                  233
Cells_Cultured_fibroblasts             335
Cells_EBV-transformed_lymphocytes      305
Colon_Sigmoid                          271
Colon_Transverse                       254
Esophagus_Gastroesophageal_Junction    272
Esophagus_Mucosa                       285
Esophagus_Muscularis                   279
Heart_Atrial_Appendage                 307
Heart_Left_Ventricle                   363
Liver                                  330
Lung                                   234
Minor_Salivary_Gland                   243
Muscle_Skeletal                        371
Nerve_Tibial                           235
Ovary                                  235
Pancreas                               303
Pituitary                              193
Prostate                               212
Skin_Not_Sun_Exposed_Suprapubic        253
Skin_Sun_Exposed_Lower_leg             251
Small_Intestine_Terminal_Ileum         233
Spleen                                 251
Stomach                                258
Testis                                  82
Thyroid                                215
Uterus                                 243
Vagina                                 228
Whole_Blood                            374

The histograms and summary statistics above show that mr.mash does better than elastic net across tissues for the majority of genes and seldom does much worse. When splitting the results by tissue, we can see that the distribution of the difference in RMSE has the majority of the mass on the negative support, which correspond to better performance of mr.mash. There are a few exceptions to this such as Whole Blood, Testis, and Thyroid. One explanation is that these tissues have larger sample size, which makes borrowing of information across tissues less effective, and more tissue-specific effects.

Boxplots

###Compute difference in RMSE between mr.mash and enet
rmse_diff <- (as.matrix(rmse_mrmash) - as.matrix(rmse_enet)) #/as.matrix(rmse_enet)
medians <- colMedians(rmse_diff, na.rm=TRUE)
rmse_diff <- rmse_diff[, order(medians, decreasing = FALSE)]
rmse_diff_melt <- reshape2::melt(rmse_diff, value.name="RMSE_diff")
rmse_diff_melt <- rmse_diff_melt[, -1]
colnames(rmse_diff_melt)[1] <- "Tissue"

means <- tapply(rmse_diff_melt$RMSE_diff, rmse_diff_melt$Tissue, mean, na.rm=TRUE)
n_group <- ncol(rmse_diff)

###Plot
par(mar = c(13.1,5.4,4,2) + 0.1)
boxplot(RMSE_diff~Tissue, data=rmse_diff_melt, xlab="", ylab="mr.mash RMSE - e-net RMSE", #ylab="(mr.mash RMSE - e-net RMSE)/e-net RMSE", 
         cex.lab=1.5, xaxt = "n", col = "blue", bty = "n", main="All signals")
points(means,col="black",pch=18)
abline(h=0, col="black")
axis(1, at = 1:n_group, labels = FALSE)
text(x = 1:n_group,
     y = par()$usr[3] - 0.025 * (par()$usr[4] - par()$usr[3]),
     labels = levels(rmse_diff_melt$Tissue), srt = 45, xpd = TRUE, adj = 1,
     cex = 1.1)

Past versions of "box by tissue-1.png"

Version	Author	Date
76f4680	Fabio Morgante	2022-05-10

The boxplot confirms the observations made in the histograms, perhaps in a more clear and concise way.

Session information

sessionInfo()

R version 4.0.3 (2020-10-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: CentOS Linux 8

Matrix products: default
BLAS/LAPACK: /scratch/midway3/fmorgante/miniconda3/envs/py38dsc/lib/libopenblasp-r0.3.12.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] reshape2_1.4.4     matrixStats_0.58.0 dplyr_1.0.5        cowplot_1.1.1     
[5] ggplot2_3.3.3     

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6        highr_0.8         plyr_1.8.6        pillar_1.6.0     
 [5] compiler_4.0.3    later_1.1.0.1     git2r_0.28.0      workflowr_1.6.2  
 [9] tools_4.0.3       digest_0.6.27     evaluate_0.14     lifecycle_1.0.0  
[13] tibble_3.1.0      gtable_0.3.0      pkgconfig_2.0.3   rlang_0.4.10     
[17] yaml_2.2.1        xfun_0.22         withr_2.4.1       stringr_1.4.0    
[21] knitr_1.32        generics_0.1.0    fs_1.5.0          vctrs_0.3.7      
[25] tidyselect_1.1.0  rprojroot_2.0.2   grid_4.0.3        glue_1.4.2       
[29] R6_2.5.0          fansi_0.4.2       rmarkdown_2.7     farver_2.1.0     
[33] purrr_0.3.4       magrittr_2.0.1    whisker_0.4       scales_1.1.1     
[37] promises_1.2.0.1  ellipsis_0.3.1    htmltools_0.5.1.1 colorspace_2.0-0 
[41] httpuv_1.5.5      labeling_0.4.2    utf8_1.2.1        stringi_1.5.3    
[45] munsell_0.5.0     crayon_1.4.1