Last updated: 2019-08-16

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Rmd e4f645f hillarykoch 2019-08-16 add shiny v1
html e4f645f hillarykoch 2019-08-16 add shiny v1

This Shiny App provides an interactive means to explore some of the results obtained from the VISION data analysis from our manuscript. The app offers several features:

  1. The model estimated 45 groups, but these groups can be merged together based on their distributional distance from one another. Merging groups may be useful for visualization, interpretation, or simply increasing the number of samples (loci) that belong to any one group.
  2. View which loci belong to which group in a given region of the chromosome
  3. View the pattern of effects across all cell types for a given group
  4. View the correlation between CTCF binding and expression levels of nearby genes across all cell types (RNA-seq not available for all cell types)
Shiny applications not supported in static R Markdown documents

sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] reshape2_1.4.3    data.table_1.12.0 cowplot_0.9.4    
 [4] ggplot2_3.1.0     abind_1.4-5       magrittr_1.5     
 [7] dplyr_0.8.0.1     purrr_0.3.1       readr_1.3.1      
[10] shiny_1.3.2      

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.2       plyr_1.8.4       compiler_3.5.2   pillar_1.3.1    
 [5] later_0.8.0      git2r_0.24.0     workflowr_1.3.0  tools_3.5.2     
 [9] digest_0.6.20    evaluate_0.13    tibble_2.0.1     gtable_0.2.0    
[13] pkgconfig_2.0.2  rlang_0.4.0      rstudioapi_0.9.0 yaml_2.2.0      
[17] xfun_0.5         withr_2.1.2      stringr_1.4.0    knitr_1.22      
[21] fs_1.2.6         hms_0.4.2        rprojroot_1.3-2  grid_3.5.2      
[25] tidyselect_0.2.5 glue_1.3.1       R6_2.4.0         rmarkdown_1.12  
[29] whisker_0.3-2    scales_1.0.0     backports_1.1.3  promises_1.0.1  
[33] htmltools_0.3.6  assertthat_0.2.1 colorspace_1.4-0 mime_0.7        
[37] xtable_1.8-4     httpuv_1.5.1     stringi_1.4.3    lazyeval_0.2.1  
[41] munsell_0.5.0    crayon_1.3.4