QC-Report

Allele-Frequency Correlation

Uploaded Samples vs. Reference Panel

The plot shows the densities of frequencies falling into each part. The first 5000 points from areas of lowest regional densities will be plotted.

Potential Frequency Mismatches

Markers where chisq is greater than 300.

## Total mismatches: 895

## Mismatched frequencies for '1:4549481' f[G,A] = [0.9998143,0.0001856665] vs [0.8918,0.1082], chisq 640.0157
## Mismatched frequencies for '1:10296364' f[A,C] = [0.7168831,0.2831169] vs [0.8781,0.1219], chisq 969.9424
## Mismatched frequencies for '1:12865657' f[A,C] = [0.9608278,0.03917221] vs [0.9995,5e-04], chisq 1158.458
## Mismatched frequencies for '1:12867288' f[A,G] = [0.9764466,0.02355341] vs [0.9997,3e-04], chisq 694.8293
## Mismatched frequencies for '1:12869122' f[G,T] = [0.9589649,0.04103512] vs [0.9994,6e-04], chisq 1196.988
## Mismatched frequencies for '1:12871828' f[G,A] = [0.9568902,0.0431098] vs [0.9994,6e-04], chisq 1264.934
## Mismatched frequencies for '1:16151285' f[A,C] = [0.8716814,0.1283186] vs [0.9706,0.0294], chisq 1091.573
## Mismatched frequencies for '1:19665457' f[A,C] = [0.76099,0.23901] vs [0.8923,0.1077], chisq 724.2492
## Mismatched frequencies for '1:31448207' f[T,G] = [0.6227424,0.3772576] vs [0.7874,0.2126], chisq 698.7207
## Mismatched frequencies for '1:32170247' f[T,G] = [0.8738473,0.1261527] vs [0.9951,0.0049], chisq 3139.904
## Mismatched frequencies for '1:33838192' f[C,A] = [0.9043847,0.09561533] vs [0.9912,0.0088], chisq 1686.486
## Mismatched frequencies for '1:34764974' f[A,C] = [0.3751844,0.6248156] vs [0.5173,0.4827], chisq 375.4839
## Mismatched frequencies for '1:35767163' f[A,G] = [0.9798073,0.02019266] vs [0.9981,0.0019], chisq 345.156
## Mismatched frequencies for '1:36587329' f[G,A] = [0.835175,0.1648251] vs [0.9531,0.0469], chisq 1083.167
## Mismatched frequencies for '1:37801111' f[C,T] = [0.1656761,0.8343239] vs [0.04430002,0.9557], chisq 1177.644
## Mismatched frequencies for '1:37857833' f[G,A] = [0.9234034,0.07659653] vs [0.993,0.007], chisq 1349.555
## Mismatched frequencies for '1:39349014' f[T,C] = [0.5631032,0.4368968] vs [0.6893,0.3107], chisq 333.5487
## Mismatched frequencies for '1:44327717' f[A,G] = [0.9630314,0.03696858] vs [0.9918,0.0082], chisq 315.6985
## Mismatched frequencies for '1:52150585' f[C,T] = [0.7685083,0.2314917] vs [0.8605,0.1395], chisq 304.3064
## Mismatched frequencies for '1:55085605' f[C,T] = [0.9058585,0.09414149] vs [0.9998,2e-04], chisq 3047.213
## Mismatched frequencies for '1:56931473' f[C,A] = [0.7549238,0.2450762] vs [0.9348,0.0652], chisq 1809.854
## Mismatched frequencies for '1:60046727' f[A,G] = [0.9737717,0.0262283] vs [0.9992,8e-04], chisq 679.7008
## Mismatched frequencies for '1:63252215' f[C,A] = [0.8203758,0.1796242] vs [0.9625,0.0375], chisq 1723.361
## Mismatched frequencies for '1:67300880' f[T,C] = [0.3955031,0.6044969] vs [0.5427,0.4573], chisq 403.6815
## Mismatched frequencies for '1:67518988' f[C,A] = [0.3432781,0.6567219] vs [0.5191,0.4809], chisq 575.3252
## Mismatched frequencies for '1:70102763' f[T,C] = [0.7602285,0.2397715] vs [0.9368,0.0632], chisq 1797.177
## Mismatched frequencies for '1:71511990' f[C,A] = [0.8005525,0.1994475] vs [0.9548,0.0452], chisq 1763.3
## Mismatched frequencies for '1:78634464' f[A,G] = [0.8612238,0.1387763] vs [0.9911,0.0089], chisq 2932.713
## Mismatched frequencies for '1:81290365' f[C,T] = [0.7296501,0.2703499] vs [0.8307,0.1693], chisq 316.6749
## Mismatched frequencies for '1:87181941' f[T,G] = [0.920761,0.07923901] vs [0.98,0.02], chisq 588.8141
## Mismatched frequencies for '1:87802675' f[G,A] = [0.958364,0.04163596] vs [0.9981,0.0019], chisq 974.6972
## Mismatched frequencies for '1:89652071' f[T,C] = [0.5338858,0.4661142] vs [0.7315,0.2685], chisq 870.4139
## Mismatched frequencies for '1:89898925' f[G,A] = [0.9141433,0.08585672] vs [0.9981,0.0019], chisq 2386.68
## Mismatched frequencies for '1:90594210' f[A,C] = [0.07822878,0.9217712] vs [0.2377,0.7623], chisq 700.1277
## Mismatched frequencies for '1:91432749' f[C,T] = [0.8771639,0.1228361] vs [0.9984,0.0016], chisq 3674.208
## Mismatched frequencies for '1:105798924' f[A,G] = [0.8399631,0.1600368] vs [0.9933,0.0067], chisq 3927.882
## Mismatched frequencies for '1:107518305' f[A,C] = [0.8191057,0.1808943] vs [0.9989,0.0011], chisq 5752.264
## Mismatched frequencies for '1:159174683' f[T,C] = [0.9240413,0.0759587] vs [0.9719,0.0281], chisq 315.6114
## Mismatched frequencies for '1:164176334' f[T,C] = [0.3950572,0.6049428] vs [0.5861,0.4139], chisq 687.7907
## Mismatched frequencies for '1:170605146' f[C,T] = [0.8139278,0.1860722] vs [0.9933,0.0067], chisq 4774.124
## Mismatched frequencies for '1:177025724' f[C,T] = [0.8663841,0.1336159] vs [0.9944,0.0056], chisq 3261.986
## Mismatched frequencies for '1:185001739' f[T,C] = [0.9403315,0.05966851] vs [0.9978,0.0022], chisq 1488.069
## Mismatched frequencies for '1:190960921' f[C,A] = [0.7963442,0.2036558] vs [0.6263,0.3737], chisq 590.4372
## Mismatched frequencies for '1:194270976' f[C,T] = [0.9451422,0.05485778] vs [0.9874,0.0126], chisq 453.0074
## Mismatched frequencies for '1:197886261' f[T,C] = [0.9742402,0.02575982] vs [0.9987,0.0013], chisq 581.2455
## Mismatched frequencies for '1:200075190' f[T,C] = [0.582535,0.417465] vs [0.7392,0.2608], chisq 562.2413
## Mismatched frequencies for '1:200282752' f[C,A] = [0.9848931,0.01510685] vs [0.9994,6e-04], chisq 366.4747
## Mismatched frequencies for '1:202212247' f[C,A] = [0.9612974,0.03870254] vs [0.9998,2e-04], chisq 1213.342
## Mismatched frequencies for '1:202934765' f[C,T] = [0.1128735,0.8871265] vs [0.2368,0.7632], chisq 417.0919
## Mismatched frequencies for '1:203496733' f[C,A] = [0.8634002,0.1365998] vs [0.9655,0.0345], chisq 1033.155
## Mismatched frequencies for '1:204764279' f[A,G] = [0.8489871,0.1510129] vs [0.9949,0.0051], chisq 3910.33
## Mismatched frequencies for '1:214154663' f[T,C] = [0.965142,0.03485799] vs [0.9985,0.0015], chisq 829.3467
## Mismatched frequencies for '1:218723481' f[C,T] = [0.8922906,0.1077093] vs [0.9715,0.0285], chisq 762.1586
## Mismatched frequencies for '1:224468986' f[C,T] = [0.9508287,0.04917127] vs [0.9934,0.0066], chisq 672.4318
## Mismatched frequencies for '1:227317415' f[T,C] = [0.8448467,0.1551533] vs [0.9993,7e-04], chisq 4974.221
## Mismatched frequencies for '1:230241157' f[T,C] = [0.9859779,0.01402214] vs [0.9998,2e-04], chisq 408.4664
## Mismatched frequencies for '1:231977552' f[T,G] = [0.7515665,0.2484335] vs [0.9377,0.0623], chisq 1987.585
## Mismatched frequencies for '1:232177834' f[A,C] = [0.9672071,0.03279293] vs [0.9998,2e-04], chisq 1019.779
## Mismatched frequencies for '1:234859504' f[G,A] = [0.7484346,0.2515654] vs [0.9031,0.0969], chisq 1061.01
## Mismatched frequencies for '1:236026148' f[C,T] = [0.5650092,0.4349908] vs [0.7482,0.2518], chisq 777.7212
## Mismatched frequencies for '1:242177121' f[G,A] = [0.9623616,0.03763838] vs [0.9941,0.0059], chisq 452.879
## Mismatched frequencies for '1:242990635' f[T,C] = [0.7774503,0.2225497] vs [0.9085,0.0915], chisq 814.0728
## Mismatched frequencies for '1:244367585' f[C,T] = [0.9517317,0.04826824] vs [0.9982,0.0018], chisq 1197.754
## Mismatched frequencies for '1:244489419' f[G,A] = [0.8339477,0.1660523] vs [0.9988,0.0012], chisq 5223.349
## Mismatched frequencies for '1:246017897' f[C,T] = [0.8617691,0.1382309] vs [0.9917,0.0083], chisq 2994.541
## Mismatched frequencies for '1:246310560' f[C,A] = [0.8764793,0.1235207] vs [0.9998,2e-04], chisq 4031.031
## Mismatched frequencies for '10:601143' f[C,T] = [0.8150129,0.1849871] vs [0.997,0.003], chisq 5457.169
## Mismatched frequencies for '10:7999757' f[G,T] = [0.2033555,0.7966446] vs [0.3893,0.6107], chisq 695.2081
## Mismatched frequencies for '10:12386608' f[T,C] = [0.9137804,0.0862196] vs [0.9997,3e-04], chisq 2758.187
## Mismatched frequencies for '10:14804800' f[C,A] = [0.9858038,0.01419617] vs [0.9994,6e-04], chisq 338.2951
## Mismatched frequencies for '10:18687643' f[C,A] = [0.3317895,0.6682105] vs [0.4631,0.5369], chisq 323.2278
## Mismatched frequencies for '10:20471000' f[T,G] = [0.9649963,0.03500368] vs [0.9995,5e-04], chisq 1022.964
## Mismatched frequencies for '10:21014700' f[A,G] = [0.8844879,0.1155122] vs [0.9824,0.0176], chisq 1455.872
## Mismatched frequencies for '10:27154973' f[G,A] = [0.02271888,0.9772811] vs [0.1695,0.8305], chisq 790.5279
## Mismatched frequencies for '10:27945831' f[A,G] = [0.9554529,0.04454713] vs [0.9986,0.0014], chisq 1150.322
## Mismatched frequencies for '10:36805956' f[C,A] = [0.09608278,0.9039172] vs [0.2572,0.7428], chisq 671.4474
## Mismatched frequencies for '10:50003538' f[A,G] = [0.9318349,0.06816507] vs [0.9944,0.0056], chisq 1268.672
## Mismatched frequencies for '10:54564363' f[A,C] = [0.7728281,0.2271719] vs [0.8992,0.1008], chisq 707.1748
## Mismatched frequencies for '10:55954370' f[A,G] = [0.663529,0.336471] vs [0.8408,0.1592], chisq 969.5809
## Mismatched frequencies for '10:58669146' f[A,G] = [0.8805804,0.1194196] vs [0.9785,0.0215], chisq 1294.79
## Mismatched frequencies for '10:59500737' f[G,A] = [0.2703499,0.7296501] vs [0.3969,0.6031], chisq 316.6214
## Mismatched frequencies for '10:70051810' f[A,G] = [0.1561694,0.8438306] vs [0.06660002,0.9334], chisq 510.3956
## Mismatched frequencies for '10:70184273' f[A,C] = [0.9353225,0.06467754] vs [0.9969,0.0031], chisq 1495.222
## Mismatched frequencies for '10:70930185' f[A,G] = [0.8272493,0.1727507] vs [0.9994,6e-04], chisq 5598.165
## Mismatched frequencies for '10:72242896' f[A,G] = [0.9668273,0.03317272] vs [0.8901,0.1099], chisq 305.4756
## Mismatched frequencies for '10:72851440' f[A,C] = [0.8160221,0.1839779] vs [0.9155,0.0845], chisq 517.2547
## Mismatched frequencies for '10:76358199' f[C,T] = [0.7868732,0.2131268] vs [0.9453,0.0547], chisq 1634.011
## Mismatched frequencies for '10:79205155' f[T,C] = [0.9632298,0.03677014] vs [0.9966,0.0034], chisq 637.6763
## Mismatched frequencies for '10:81215872' f[A,C] = [0.8394107,0.1605893] vs [0.9944,0.0056], chisq 4133.911
## Mismatched frequencies for '10:83682418' f[G,A] = [0.9979592,0.002040816] vs [0.9378,0.0622], chisq 329.5981
## Mismatched frequencies for '10:83763784' f[C,T] = [0.9587325,0.0412675] vs [0.9959,0.0041], chisq 688.2371
## Mismatched frequencies for '10:84120628' f[A,G] = [0.9347345,0.06526548] vs [0.9792,0.0208], chisq 347.724
## Mismatched frequencies for '10:84989673' f[C,A] = [0.9215867,0.07841328] vs [0.9971,0.0029], chisq 1959.821
## Mismatched frequencies for '10:88249658' f[G,A] = [0.9117864,0.08821363] vs [0.9902,0.0098], chisq 1389.08
## Mismatched frequencies for '10:91056264' f[G,A] = [0.4710118,0.5289882] vs [0.6648,0.3352], chisq 753.9466
## Mismatched frequencies for '10:94880586' f[T,C] = [0.8983395,0.1016605] vs [0.9606,0.0394], chisq 391.6365
## Mismatched frequencies for '10:95030453' f[A,C] = [0.7930971,0.2069029] vs [0.9856,0.0144], chisq 4283.433
## Mismatched frequencies for '10:95061360' f[T,G] = [0.2515747,0.7484254] vs [0.4487,0.5513], chisq 738.0401
## Mismatched frequencies for '10:97902064' f[T,G] = [0.6771755,0.3228245] vs [0.8752,0.1248], chisq 1405.267
## Mismatched frequencies for '10:106041040' f[G,A] = [0.9622189,0.03778106] vs [0.9999,1e-04], chisq 1207.877
## Mismatched frequencies for '10:109196739' f[C,T] = [0.9354957,0.06450424] vs [0.9989,0.0011], chisq 1855.124
## Mismatched frequencies for '10:114457625' f[A,G] = [0.7706338,0.2293662] vs [0.9055,0.0945], chisq 838.6558
## Mismatched frequencies for '10:119820861' f[A,G] = [0.8105049,0.1894952] vs [0.8951,0.1049], chisq 320.2514
## Mismatched frequencies for '10:121845939' f[T,C] = [0.8169742,0.1830258] vs [0.998,0.002], chisq 5613.053
## Mismatched frequencies for '10:122576385' f[T,C] = [0.7128913,0.2871087] vs [0.9126,0.0874], chisq 1809.195
## Mismatched frequencies for '10:128609786' f[A,G] = [0.8763461,0.1236539] vs [0.9872,0.0128], chisq 2045.347
## Mismatched frequencies for '10:130435542' f[T,G] = [0.9587477,0.0412523] vs [0.9961,0.0039], chisq 708.1099
## Mismatched frequencies for '10:130595884' f[T,C] = [0.9143646,0.08563536] vs [0.9961,0.0039], chisq 2022.473
## Mismatched frequencies for '10:132272039' f[C,T] = [0.8158186,0.1841814] vs [0.9648,0.0352], chisq 1934.316
## Mismatched frequencies for '10:132364913' f[A,G] = [0.8365953,0.1634047] vs [0.9946,0.0054], chisq 4259.758
## Mismatched frequencies for '10:132461650' f[T,G] = [0.9368324,0.06316759] vs [0.9997,3e-04], chisq 1994.072
## Mismatched frequencies for '11:3322578' f[C,T] = [0.9612546,0.03874539] vs [0.9997,3e-04], chisq 1190.652
## Mismatched frequencies for '11:7139718' f[A,C] = [0.8584104,0.1415896] vs [0.9936,0.0064], chisq 3383.793
## Mismatched frequencies for '11:7245870' f[G,A] = [0.9783574,0.02164262] vs [0.9996,4e-04], chisq 611.4546
## Mismatched frequencies for '11:8605671' f[A,G] = [0.9719661,0.02803394] vs [0.9987,0.0013], chisq 651.2166
## Mismatched frequencies for '11:10188537' f[A,C] = [0.924935,0.07506503] vs [0.9966,0.0034], chisq 1768.82
## Mismatched frequencies for '11:11675663' f[T,C] = [0.9153761,0.0846239] vs [0.9978,0.0022], chisq 2287.7
## Mismatched frequencies for '11:18159669' f[G,A] = [0.9992582,0.0007418398] vs [0.9227,0.0773], chisq 437.2196
## Mismatched frequencies for '11:26089147' f[C,T] = [0.84777,0.15223] vs [0.9734,0.0266], chisq 1722.455
## Mismatched frequencies for '11:29800370' f[T,C] = [0.4167588,0.5832412] vs [0.5864,0.4136], chisq 543.8966
## Mismatched frequencies for '11:34382115' f[A,C] = [0.9020733,0.09792669] vs [0.9638,0.0362], chisq 410.5882
## Mismatched frequencies for '11:35433712' f[C,A] = [0.9618081,0.03819188] vs [0.9994,6e-04], chisq 1104.688
## Mismatched frequencies for '11:45713130' f[C,T] = [0.9574429,0.04255711] vs [0.9998,2e-04], chisq 1339.838
## Mismatched frequencies for '11:62463750' f[T,G] = [0.9795843,0.02041574] vs [0.9995,5e-04], chisq 551.5355
## Mismatched frequencies for '11:62608885' f[A,G] = [0.9375461,0.06245394] vs [0.9953,0.0047], chisq 1211.535
## Mismatched frequencies for '11:68222140' f[A,C] = [0.9373387,0.06266126] vs [0.999,0.001], chisq 1816.29
## Mismatched frequencies for '11:68279275' f[T,G] = [0.9278598,0.07214022] vs [0.9903,0.0097], chisq 990.3734
## Mismatched frequencies for '11:69489418' f[C,A] = [0.9543278,0.04567219] vs [0.9964,0.0036], chisq 863.5939
## Mismatched frequencies for '11:70225728' f[A,T] = [0.8712009,0.1287991] vs [0.9986,0.0014], chisq 3917.087
## Mismatched frequencies for '11:75764388' f[A,C] = [0.9424779,0.05752213] vs [0.9951,0.0049], chisq 1048.228
## Mismatched frequencies for '11:76118991' f[C,A] = [0.132239,0.867761] vs [0.3248,0.6752], chisq 824.7291
## Mismatched frequencies for '11:82335224' f[T,C] = [0.8684987,0.1315013] vs [0.9755,0.0245], chisq 1391.597
## Mismatched frequencies for '11:86354036' f[G,T] = [0.07804428,0.9219557] vs [0.2254,0.7746], chisq 620.3536
## Mismatched frequencies for '11:99853866' f[C,T] = [0.3446746,0.6553255] vs [0.5429,0.4571], chisq 729.2577
## Mismatched frequencies for '11:100622000' f[G,A] = [0.8986735,0.1013265] vs [0.9634,0.0366], chisq 445.1724
## Mismatched frequencies for '11:104004903' f[C,T] = [0.8897899,0.1102101] vs [0.9865,0.0135], chisq 1634.72
## Mismatched frequencies for '11:105852319' f[A,C] = [0.935472,0.06452803] vs [0.9809,0.0191], chisq 384.47
## Mismatched frequencies for '11:118032779' f[A,G] = [0.4893186,0.5106814] vs [0.6491,0.3509], chisq 507.3956
## Mismatched frequencies for '11:118047847' f[A,C] = [0.9283081,0.07169186] vs [0.9995,5e-04], chisq 2227.331
## Mismatched frequencies for '11:125000879' f[T,G] = [0.7954125,0.2045875] vs [0.9426,0.0574], chisq 1389.432
## Mismatched frequencies for '11:126088425' f[G,T] = [0.9535398,0.04646018] vs [0.9984,0.0016], chisq 1175.483
## Mismatched frequencies for '11:126260222' f[G,T] = [0.6813653,0.3186347] vs [0.8215,0.1785], chisq 573.2039
## Mismatched frequencies for '11:126582181' f[C,T] = [0.9765683,0.02343173] vs [0.9985,0.0015], chisq 484.0186
## Mismatched frequencies for '11:130023869' f[C,T] = [0.8343173,0.1656827] vs [0.9984,0.0016], chisq 5116.022
## Mismatched frequencies for '11:134082269' f[T,G] = [0.9816938,0.01830621] vs [0.9985,0.0015], chisq 337.1012
## Mismatched frequencies for '12:2962779' f[G,T] = [0.8435888,0.1564112] vs [0.974,0.026], chisq 1853.057
## Mismatched frequencies for '12:9273449' f[G,A] = [0.5771639,0.4228361] vs [0.7184,0.2816], chisq 440.3587
## Mismatched frequencies for '12:10353286' f[A,G] = [0.8480103,0.1519897] vs [0.9864,0.0136], chisq 2757.119
## Mismatched frequencies for '12:12475506' f[G,A] = [0.9254144,0.07458564] vs [0.9988,0.0012], chisq 2164.083
## Mismatched frequencies for '12:14095271' f[C,T] = [0.3761975,0.6238025] vs [0.5498,0.4502], chisq 562.0299
## Mismatched frequencies for '12:20884811' f[A,G] = [0.7305566,0.2694434] vs [0.926,0.074], chisq 1939.078
## Mismatched frequencies for '12:21143827' f[C,T] = [0.9016605,0.09833948] vs [0.9953,0.0047], chisq 2292.205
## Mismatched frequencies for '12:21339490' f[T,A] = [0.9998147,0.0001853225] vs [0.9296,0.0704], chisq 401.9939
## Mismatched frequencies for '12:22993726' f[G,T] = [0.5714812,0.4285188] vs [0.7199,0.2801], chisq 486.5715
## Mismatched frequencies for '12:24040849' f[A,G] = [0.9220995,0.07790055] vs [0.9942,0.0058], chisq 1523.873
## Mismatched frequencies for '12:25666721' f[T,C] = [0.5759867,0.4240133] vs [0.695,0.305], chisq 301.4244
## Mismatched frequencies for '12:30966994' f[T,G] = [0.8338246,0.1661754] vs [0.9821,0.0179], chisq 2718.913
## Mismatched frequencies for '12:32227331' f[A,G] = [0.8421731,0.1578269] vs [0.9916,0.0084], chisq 3591.705
## Mismatched frequencies for '12:34440951' f[C,T] = [0.9998149,0.0001850481] vs [0.934,0.066], chisq 375.7736
## Mismatched frequencies for '12:41503228' f[C,T] = [0.865094,0.134906] vs [0.9993,7e-04], chisq 4289.943
## Mismatched frequencies for '12:44313636' f[A,G] = [0.8859196,0.1140804] vs [0.9497,0.0503], chisq 338.3226
## Mismatched frequencies for '12:46074564' f[C,T] = [0.6822034,0.3177966] vs [0.8218,0.1782], chisq 570.2901
## Mismatched frequencies for '12:49386548' f[G,A] = [0.6913444,0.3086556] vs [0.8707,0.1293], chisq 1142.595
## Mismatched frequencies for '12:65342354' f[C,A] = [0.8257185,0.1742815] vs [0.9545,0.0455], chisq 1288.562
## Mismatched frequencies for '12:65930289' f[C,T] = [0.941209,0.05879101] vs [0.989,0.011], chisq 605.9231
## Mismatched frequencies for '12:69334985' f[A,G] = [0.6068534,0.3931466] vs [0.7945,0.2055], chisq 918.0104
## Mismatched frequencies for '12:78010508' f[G,A] = [0.9777164,0.02228361] vs [0.9971,0.0029], chisq 309.6395
## Mismatched frequencies for '12:78067813' f[C,T] = [0.830735,0.169265] vs [0.9118,0.0882], chisq 338.2147
## Mismatched frequencies for '12:85409322' f[C,T] = [0.4515475,0.5484525] vs [0.6029,0.3971], chisq 437.6824
## Mismatched frequencies for '12:91664745' f[A,G] = [0.9662362,0.03376384] vs [0.9999,1e-04], chisq 1076.117
## Mismatched frequencies for '12:96463715' f[T,C] = [0.8415805,0.1584195] vs [0.9373,0.0627], chisq 602.8249
## Mismatched frequencies for '12:100051423' f[G,A] = [0.90219,0.09780995] vs [0.9909,0.0091], chisq 1711.078
## Mismatched frequencies for '12:102949945' f[C,A] = [0.9413717,0.05862832] vs [0.9983,0.0017], chisq 1544.602
## Mismatched frequencies for '12:106544212' f[G,A] = [0.9476594,0.05234058] vs [0.9982,0.0018], chisq 1326.15
## Mismatched frequencies for '12:106749804' f[A,C] = [0.5348195,0.4651806] vs [0.6909,0.3091], chisq 511.2675
## Mismatched frequencies for '12:108524254' f[T,G] = [0.9097453,0.09025471] vs [0.9982,0.0018], chisq 2551.19
## Mismatched frequencies for '12:108573043' f[G,T] = [0.9985146,0.001485332] vs [0.9245,0.0755], chisq 416.5952
## Mismatched frequencies for '12:110819760' f[A,G] = [0.8046041,0.195396] vs [0.9516,0.0484], chisq 1555.184
## Mismatched frequencies for '12:111341920' f[G,T] = [0.9998145,0.0001854599] vs [0.9321,0.0679], chisq 386.4688
## Mismatched frequencies for '12:111355326' f[G,A] = [0.9151571,0.08484288] vs [0.9791,0.0209], chisq 650.8911
## Mismatched frequencies for '12:112332568' f[A,G] = [0.8083733,0.1916267] vs [0.9769,0.0231], chisq 2933.324
## Mismatched frequencies for '12:112977311' f[A,G] = [0.870343,0.129657] vs [0.9987,0.0013], chisq 3970.339
## Mismatched frequencies for '12:114842284' f[A,G] = [0.8680428,0.1319572] vs [0.9976,0.0024], chisq 3804.517
## Mismatched frequencies for '12:116789509' f[C,A] = [0.8899778,0.1100222] vs [0.9928,0.0072], chisq 2290.126
## Mismatched frequencies for '12:131221252' f[T,C] = [0.7335914,0.2664086] vs [0.8488,0.1512], chisq 441.9852
## Mismatched frequencies for '12:133226046' f[C,T] = [0.9794824,0.02051756] vs [0.998,0.002], chisq 343.9571
## Mismatched frequencies for '12:133525460' f[G,T] = [0.06855879,0.9314412] vs [0.2262,0.7738], chisq 712.4486
## Mismatched frequencies for '13:19418102' f[G,T] = [0.9996306,0.0003694126] vs [0.9257,0.0743], chisq 425.0293
## Mismatched frequencies for '13:20686602' f[G,T] = [0.6569061,0.3430939] vs [0.8194,0.1806], chisq 756.768
## Mismatched frequencies for '13:22920156' f[A,G] = [0.9966642,0.003335804] vs [0.9214,0.0786], chisq 414.2854
## Mismatched frequencies for '13:23641766' f[C,T] = [0.9197053,0.08029466] vs [0.9996,4e-04], chisq 2536.638
## Mismatched frequencies for '13:25249744' f[T,G] = [0.8878229,0.1121771] vs [0.9931,0.0069], chisq 2396.884
## Mismatched frequencies for '13:31346557' f[G,T] = [0.9220707,0.07792926] vs [0.9998,2e-04], chisq 2507.748
## Mismatched frequencies for '13:34951646' f[C,A] = [0.8796979,0.1203021] vs [0.997,0.003], chisq 3297.016
## Mismatched frequencies for '13:38045165' f[C,A] = [0.8582503,0.1417497] vs [0.9747,0.0253], chisq 1566.582
## Mismatched frequencies for '13:39885104' f[T,G] = [0.8933579,0.1066421] vs [0.9598,0.0402], chisq 434.1012
## Mismatched frequencies for '13:51889495' f[C,T] = [0.7970534,0.2029466] vs [0.913,0.087], chisq 673.3693
## Mismatched frequencies for '13:52343499' f[T,A] = [0.8229825,0.1770175] vs [0.9997,3e-04], chisq 5818.115
## Mismatched frequencies for '13:53617518' f[T,G] = [0.9471154,0.05288462] vs [0.9983,0.0017], chisq 1360.567
## Mismatched frequencies for '13:58809674' f[A,G] = [0.8173255,0.1826745] vs [0.9931,0.0069], chisq 4625.619
## Mismatched frequencies for '13:61159957' f[A,C] = [0.8696534,0.1303466] vs [0.9984,0.0016], chisq 3925.055
## Mismatched frequencies for '13:69020749' f[C,A] = [0.09203246,0.9079676] vs [0.03759998,0.9624], chisq 317.7134
## Mismatched frequencies for '13:71802543' f[A,G] = [0.9043494,0.09565057] vs [0.9985,0.0015], chisq 2792.804
## Mismatched frequencies for '13:79012523' f[T,C] = [0.5014777,0.4985223] vs [0.693,0.307], chisq 764.7563
## Mismatched frequencies for '13:79193456' f[C,A] = [0.8917773,0.1082227] vs [0.9601,0.0399], chisq 459.531
## Mismatched frequencies for '13:80192236' f[A,G] = [0.5403761,0.4596239] vs [0.7383,0.2617], chisq 884.1887
## Mismatched frequencies for '13:81353872' f[A,C] = [0.8405985,0.1594016] vs [0.9862,0.0138], chisq 2944.406
## Mismatched frequencies for '13:82485304' f[A,G] = [0.3267035,0.6732965] vs [0.4555,0.5445], chisq 313.654
## Mismatched frequencies for '13:85496293' f[A,G] = [0.7772241,0.2227759] vs [0.9655,0.0345], chisq 2854.991
## Mismatched frequencies for '13:97518850' f[T,C] = [0.8361235,0.1638765] vs [0.964,0.036], chisq 1472.213
## Mismatched frequencies for '13:99860249' f[T,C] = [0.2489864,0.7510136] vs [0.4034,0.5966], chisq 469.891
## Mismatched frequencies for '13:102611722' f[G,A] = [0.9532056,0.0467944] vs [0.9987,0.0013], chisq 1241.208
## Mismatched frequencies for '13:104959504' f[A,G] = [0.7159217,0.2840783] vs [0.8889,0.1111], chisq 1182.93
## Mismatched frequencies for '13:105289193' f[T,C] = [0.9211013,0.07889874] vs [0.9993,7e-04], chisq 2418.107
## Mismatched frequencies for '13:110314575' f[C,G] = [0.8094974,0.1905026] vs [0.9826,0.0174], chisq 3444.402
## Mismatched frequencies for '14:21554855' f[G,T] = [0.9410681,0.05893186] vs [0.994,0.006], chisq 972.7489
## Mismatched frequencies for '14:21646942' f[C,T] = [0.7921886,0.2078114] vs [0.9472,0.0528], chisq 1610.722
## Mismatched frequencies for '14:23027964' f[C,A] = [0.7151549,0.2848451] vs [0.9111,0.0889], chisq 1727.926
## Mismatched frequencies for '14:28467400' f[A,C] = [0.804099,0.195901] vs [0.9587,0.0413], chisq 1868.345
## Mismatched frequencies for '14:31625756' f[A,C] = [0.9328661,0.0671339] vs [0.9995,5e-04], chisq 2076.635
## Mismatched frequencies for '14:33486265' f[C,T] = [0.9861111,0.01388889] vs [0.8974,0.1026], chisq 445.1112
## Mismatched frequencies for '14:35543600' f[C,T] = [0.9998157,0.0001842978] vs [0.8533,0.1467], chisq 907.9818
## Mismatched frequencies for '14:36114597' f[A,G] = [0.8532228,0.1467772] vs [0.9619,0.0381], chisq 1081.789
## Mismatched frequencies for '14:37075839' f[G,A] = [0.8116022,0.1883978] vs [0.9274,0.0726], chisq 767.8866
## Mismatched frequencies for '14:39781040' f[G,T] = [0.3388766,0.6611234] vs [0.4949,0.5051], chisq 453.0561
## Mismatched frequencies for '14:40173453' f[C,T] = [0.908404,0.09159602] vs [0.9963,0.0037], chisq 2242.065
## Mismatched frequencies for '14:41115340' f[C,T] = [0.9570269,0.04297307] vs [0.9931,0.0069], chisq 507.3658
## Mismatched frequencies for '14:42039547' f[A,C] = [0.9327313,0.06726871] vs [0.9999,1e-04], chisq 2179.705
## Mismatched frequencies for '14:47695035' f[C,A] = [0.9480472,0.05195284] vs [0.9946,0.0054], chisq 845.376
## Mismatched frequencies for '14:48720633' f[C,T] = [0.647677,0.352323] vs [0.7661,0.2339], chisq 346.8328
## Mismatched frequencies for '14:50456628' f[G,T] = [0.4120044,0.5879955] vs [0.5475,0.4525], chisq 340.985
## Mismatched frequencies for '14:56103567' f[T,C] = [0.9847089,0.01529108] vs [0.999,0.001], chisq 312.6861
## Mismatched frequencies for '14:64080047' f[A,C] = [0.8418142,0.1581858] vs [0.9216,0.0784], chisq 361.8943
## Mismatched frequencies for '14:65714650' f[G,A] = [0.879558,0.120442] vs [0.997,0.003], chisq 3301.785
## Mismatched frequencies for '14:67544503' f[C,T] = [0.984519,0.01548102] vs [0.9992,8e-04], chisq 346.289
## Mismatched frequencies for '14:70206044' f[C,T] = [0.9974055,0.002594515] vs [0.8743,0.1257], chisq 726.9692
## Mismatched frequencies for '14:78008422' f[C,A] = [0.7513812,0.2486188] vs [0.9184,0.0816], chisq 1374.786
## Mismatched frequencies for '14:78688661' f[G,A] = [0.5609577,0.4390424] vs [0.7301,0.2699], chisq 641.0337
## Mismatched frequencies for '14:79032736' f[T,C] = [0.9677598,0.03224023] vs [0.9987,0.0013], chisq 781.2389
## Mismatched frequencies for '14:80274627' f[G,A] = [0.9063767,0.09362329] vs [0.9902,0.0098], chisq 1531.709
## Mismatched frequencies for '14:84094220' f[A,G] = [0.8141805,0.1858195] vs [0.9138,0.0862], chisq 510.8219
## Mismatched frequencies for '14:85224265' f[C,T] = [0.8002948,0.1997052] vs [0.9059,0.0941], chisq 533.0709
## Mismatched frequencies for '14:87749134' f[A,G] = [0.9436438,0.05635624] vs [0.9976,0.0024], chisq 1349.643
## Mismatched frequencies for '14:91954559' f[A,C] = [0.9384928,0.0615072] vs [0.9981,0.0019], chisq 1599.142
## Mismatched frequencies for '14:93169444' f[T,G] = [0.8720973,0.1279027] vs [0.9491,0.0509], chisq 474.542
## Mismatched frequencies for '14:93798235' f[C,A] = [0.958011,0.04198895] vs [0.9995,5e-04], chisq 1250.682
## Mismatched frequencies for '14:96296266' f[G,A] = [0.9303867,0.06961326] vs [0.9862,0.0138], chisq 679.6767
## Mismatched frequencies for '14:96643400' f[A,G] = [0.8106117,0.1893884] vs [0.9332,0.0668], chisq 904.8003
## Mismatched frequencies for '14:97450296' f[T,C] = [0.998709,0.001291036] vs [0.9234,0.0766], chisq 428.5237
## Mismatched frequencies for '14:99175039' f[T,G] = [0.8590406,0.1409594] vs [0.9923,0.0077], chisq 3166.739
## Mismatched frequencies for '14:100569525' f[G,T] = [0.7861091,0.2138909] vs [0.8949,0.1051], chisq 518.6849
## Mismatched frequencies for '14:103305548' f[T,C] = [0.8166851,0.1833148] vs [0.9927,0.0073], chisq 4576.798
## Mismatched frequencies for '14:103867320' f[A,G] = [0.7100995,0.2899005] vs [0.8146,0.1854], chisq 316.8806
## Mismatched frequencies for '15:25683006' f[A,G] = [0.8488889,0.1511111] vs [0.9699,0.0301], chisq 1502.904
## Mismatched frequencies for '15:28335820' f[A,G] = [0.7130755,0.2869245] vs [0.8194,0.1806], chisq 333.9465
## Mismatched frequencies for '15:28356859' f[C,T] = [0.5241252,0.4758748] vs [0.3371,0.6629], chisq 702.972
## Mismatched frequencies for '15:28365618' f[A,G] = [0.5228614,0.4771386] vs [0.335,0.665], chisq 710.2881
## Mismatched frequencies for '15:28513364' f[T,C] = [0.3371407,0.6628593] vs [0.2115,0.7885], chisq 415.1625
## Mismatched frequencies for '15:28530182' f[C,T] = [0.348563,0.651437] vs [0.2172,0.7828], chisq 445.0698
## Mismatched frequencies for '15:29322932' f[A,G] = [0.853407,0.146593] vs [0.9948,0.0052], chisq 3748.695
## Mismatched frequencies for '15:31258621' f[A,C] = [0.9535316,0.0464684] vs [0.9998,2e-04], chisq 1467.944
## Mismatched frequencies for '15:35770607' f[A,C] = [0.983488,0.01651206] vs [0.999,0.001], chisq 347.8056
## Mismatched frequencies for '15:38422916' f[A,G] = [0.7848987,0.2151013] vs [0.9662,0.0338], chisq 2720.764
## Mismatched frequencies for '15:39182392' f[C,A] = [0.8794247,0.1205752] vs [0.9872,0.0128], chisq 1968.099
## Mismatched frequencies for '15:39502388' f[C,T] = [0.8656964,0.1343036] vs [0.969,0.031], chisq 1135.716
## Mismatched frequencies for '15:39525256' f[G,A] = [0.9537412,0.04625875] vs [0.9979,0.0021], chisq 1085.485
## Mismatched frequencies for '15:54102144' f[C,A] = [0.9655172,0.03448276] vs [0.9951,0.0049], chisq 448.2273
## Mismatched frequencies for '15:58685560' f[C,T] = [0.8099889,0.190011] vs [0.9342,0.0658], chisq 936.4186
## Mismatched frequencies for '15:58800924' f[T,G] = [0.8538206,0.1461794] vs [0.9667,0.0333], chisq 1258.856
## Mismatched frequencies for '15:62502737' f[C,T] = [0.832221,0.167779] vs [0.9518,0.0482], chisq 1084.661
## Mismatched frequencies for '15:63362491' f[A,G] = [0.90391,0.09609] vs [0.9987,0.0013], chisq 2851.014
## Mismatched frequencies for '15:64845469' f[A,C] = [0.8430468,0.1569532] vs [0.9922,0.0078], chisq 3653.234
## Mismatched frequencies for '15:78164594' f[T,C] = [0.9992592,0.0007407407] vs [0.928,0.072], chisq 405.2509
## Mismatched frequencies for '15:78472186' f[T,C] = [0.9349908,0.06500921] vs [0.9877,0.0123], chisq 664.2408
## Mismatched frequencies for '15:82016061' f[T,G] = [0.9754974,0.02450258] vs [0.9977,0.0023], chisq 420.6479
## Mismatched frequencies for '15:85456078' f[C,A] = [0.5130803,0.4869197] vs [0.7098,0.2902], chisq 829.3095
## Mismatched frequencies for '15:89299564' f[C,T] = [0.8652286,0.1347714] vs [0.9999,1e-04], chisq 4436.169
## Mismatched frequencies for '15:91792339' f[T,C] = [0.8090674,0.1909325] vs [0.9653,0.0347], chisq 2108.761
## Mismatched frequencies for '15:95667604' f[C,T] = [0.7766114,0.2233886] vs [0.9371,0.0629], chisq 1526.069
## Mismatched frequencies for '15:96651099' f[C,A] = [0.9354599,0.06454006] vs [0.9998,2e-04], chisq 2063.819
## Mismatched frequencies for '15:101493738' f[T,C] = [0.8836908,0.1163092] vs [0.9934,0.0066], chisq 2563.303
## Mismatched frequencies for '16:1767252' f[A,G] = [0.9163596,0.08364038] vs [0.9923,0.0077], chisq 1471.048
## Mismatched frequencies for '16:7239589' f[T,C] = [0.7777164,0.2222836] vs [0.9165,0.0835], chisq 966.6301
## Mismatched frequencies for '16:8061282' f[G,A] = [0.9200442,0.07995579] vs [0.9999,1e-04], chisq 2600.446
## Mismatched frequencies for '16:8087213' f[T,C] = [0.9205676,0.07943236] vs [0.9997,3e-04], chisq 2532.605
## Mismatched frequencies for '16:8144368' f[G,A] = [0.9075166,0.09248342] vs [0.9795,0.0205], chisq 806.9953
## Mismatched frequencies for '16:9325775' f[G,T] = [0.8244935,0.1755064] vs [0.9321,0.0679], chisq 705.2885
## Mismatched frequencies for '16:10691803' f[C,T] = [0.887311,0.112689] vs [0.9806,0.0194], chisq 1276.5
## Mismatched frequencies for '16:16100710' f[C,T] = [0.988762,0.01123803] vs [0.9999,1e-04], chisq 340.8965
## Mismatched frequencies for '16:17473650' f[A,C] = [0.8697014,0.1302986] vs [0.9997,3e-04], chisq 4234.182
## Mismatched frequencies for '16:26424083' f[A,G] = [0.9511791,0.04882093] vs [0.9861,0.0139], chisq 305.8202
## Mismatched frequencies for '16:26895767' f[A,G] = [0.7866642,0.2133358] vs [0.9697,0.0303], chisq 2918.318
## Mismatched frequencies for '16:52244254' f[A,G] = [0.8387394,0.1612606] vs [0.9993,7e-04], chisq 5182.111
## Mismatched frequencies for '16:63760712' f[C,T] = [0.7444731,0.2555269] vs [0.8677,0.1323], chisq 554.0225
## Mismatched frequencies for '16:72062019' f[G,A] = [0.4082535,0.5917465] vs [0.5921,0.4079], chisq 639.818
## Mismatched frequencies for '16:72916878' f[T,G] = [0.8860947,0.1139053] vs [0.9941,0.0059], chisq 2591.713
## Mismatched frequencies for '16:73400504' f[A,G] = [0.6946805,0.3053195] vs [0.8221,0.1779], chisq 477.8826
## Mismatched frequencies for '16:75652021' f[A,G] = [0.9178032,0.08219683] vs [0.9864,0.0136], chisq 956.4224
## Mismatched frequencies for '16:78208929' f[G,T] = [0.658392,0.341608] vs [0.8463,0.1537], chisq 1104.927
## Mismatched frequencies for '16:81199555' f[A,G] = [0.721505,0.278495] vs [0.8712,0.1288], chisq 815.5952
## Mismatched frequencies for '16:82166851' f[T,C] = [0.8694209,0.1305791] vs [0.9999,1e-04], chisq 4294.699
## Mismatched frequencies for '16:82397699' f[A,G] = [0.7079189,0.292081] vs [0.828,0.172], chisq 437.2697
## Mismatched frequencies for '16:83041443' f[G,A] = [0.873849,0.126151] vs [0.9861,0.0139], chisq 2015.475
## Mismatched frequencies for '16:84041970' f[C,T] = [0.8220994,0.1779005] vs [0.9722,0.0278], chisq 2236.011
## Mismatched frequencies for '16:84793795' f[G,A] = [0.9668264,0.03317361] vs [0.9997,3e-04], chisq 1008.499
## Mismatched frequencies for '16:85547973' f[A,C] = [0.8001108,0.1998893] vs [0.9913,0.0087], chisq 4885.411
## Mismatched frequencies for '16:87677456' f[A,G] = [0.8030639,0.1969362] vs [0.9999,1e-04], chisq 6553.772
## Mismatched frequencies for '17:86256' f[G,A] = [0.9730826,0.0269174] vs [0.9998,2e-04], chisq 827.7305
## Mismatched frequencies for '17:503758' f[C,T] = [0.9868372,0.01316277] vs [0.9997,3e-04], chisq 359.6627
## Mismatched frequencies for '17:3647742' f[T,C] = [0.8607222,0.1392778] vs [0.9994,6e-04], chisq 4462.141
## Mismatched frequencies for '17:4076716' f[C,T] = [0.9891064,0.01089365] vs [0.9999,1e-04], chisq 329.6804
## Mismatched frequencies for '17:5825686' f[C,A] = [0.91507,0.08492999] vs [0.9777,0.0223], chisq 602.1937
## Mismatched frequencies for '17:12121329' f[G,A] = [0.895649,0.104351] vs [0.9913,0.0087], chisq 1942.54
## Mismatched frequencies for '17:14139888' f[C,T] = [0.810313,0.1896869] vs [0.9333,0.0667], chisq 911.3473
## Mismatched frequencies for '17:14848239' f[C,A] = [0.7165499,0.2834501] vs [0.8969,0.1031], chisq 1346.527
## Mismatched frequencies for '17:14858456' f[G,T] = [0.8927644,0.1072356] vs [0.9959,0.0041], chisq 2667.941
## Mismatched frequencies for '17:14858465' f[C,T] = [0.8914886,0.1085114] vs [0.9789,0.0211], chisq 1093.707
## Mismatched frequencies for '17:16058707' f[C,A] = [0.9679748,0.03202518] vs [0.9959,0.0041], chisq 450.4554
## Mismatched frequencies for '17:16649585' f[C,T] = [0.8958718,0.1041283] vs [0.9741,0.0259], chisq 796.4009
## Mismatched frequencies for '17:18620497' f[G,A] = [0.1858407,0.8141593] vs [0.326,0.674], chisq 429.9752
## Mismatched frequencies for '17:19444191' f[C,A] = [0.945246,0.05475398] vs [0.9949,0.0051], chisq 949.1366
## Mismatched frequencies for '17:21220700' f[G,A] = [0.9718024,0.02819757] vs [0.9958,0.0042], chisq 353.3182
## Mismatched frequencies for '17:36798137' f[G,A] = [0.8444445,0.1555556] vs [0.9945,0.0055], chisq 3983.126
## Mismatched frequencies for '17:38113286' f[C,T] = [0.3782431,0.6217569] vs [0.5095,0.4905], chisq 318.9746
## Mismatched frequencies for '17:39250159' f[G,A] = [0.9998156,0.0001844338] vs [0.9032,0.0968], chisq 569.9793
## Mismatched frequencies for '17:41753065' f[T,G] = [0.7982683,0.2017318] vs [0.9842,0.0158], chisq 3956.998
## Mismatched frequencies for '17:42392042' f[T,G] = [0.9033923,0.09660767] vs [0.9963,0.0037], chisq 2400.885
## Mismatched frequencies for '17:43805194' f[T,G] = [0.4915254,0.5084746] vs [0.6572,0.3428], chisq 549.7718
## Mismatched frequencies for '17:45318090' f[G,A] = [0.7333333,0.2666667] vs [0.8444,0.1556], chisq 403.8576
## Mismatched frequencies for '17:48717141' f[T,G] = [0.930181,0.06981899] vs [0.982,0.018], chisq 503.236
## Mismatched frequencies for '17:49421890' f[T,G] = [0.9741983,0.0258017] vs [0.9987,0.0013], chisq 583.2745
## Mismatched frequencies for '17:49514993' f[G,A] = [0.9590859,0.04091412] vs [0.9976,0.0024], chisq 878.2858
## Mismatched frequencies for '17:50471215' f[T,G] = [0.847698,0.152302] vs [0.9983,0.0017], chisq 4640.938
## Mismatched frequencies for '17:60493445' f[C,T] = [0.9797347,0.02026529] vs [0.9997,3e-04], chisq 588.5792
## Mismatched frequencies for '17:64150876' f[G,A] = [0.9494632,0.05053684] vs [0.9995,5e-04], chisq 1530.013
## Mismatched frequencies for '17:75280688' f[G,T] = [0.8279867,0.1720133] vs [0.9955,0.0045], chisq 4713.893
## Mismatched frequencies for '17:77271293' f[T,C] = [0.7704797,0.2295203] vs [0.8917,0.1083], chisq 621.2828
## Mismatched frequencies for '17:77468498' f[T,C] = [0.8182321,0.181768] vs [0.9954,0.0046], chisq 5020.61
## Mismatched frequencies for '17:79029370' f[T,G] = [0.8537579,0.1462421] vs [0.9963,0.0037], chisq 4012.177
## Mismatched frequencies for '18:5993545' f[T,G] = [0.8611726,0.1388274] vs [0.9995,5e-04], chisq 4471.635
## Mismatched frequencies for '18:10246737' f[T,G] = [0.9404279,0.05957211] vs [0.9998,2e-04], chisq 1899.994
## Mismatched frequencies for '18:10605491' f[A,G] = [0.9815498,0.01845018] vs [0.9987,0.0013], chisq 365.3584
## Mismatched frequencies for '18:24171427' f[C,A] = [0.4625875,0.5374125] vs [0.647,0.353], chisq 671.488
## Mismatched frequencies for '18:28168723' f[C,T] = [0.9463693,0.05363067] vs [0.9997,3e-04], chisq 1679.515
## Mismatched frequencies for '18:29141979' f[A,G] = [0.9179904,0.08200961] vs [0.9908,0.0092], chisq 1279.822
## Mismatched frequencies for '18:32923824' f[G,A] = [0.2596685,0.7403315] vs [0.1605,0.8395], chisq 317.3
## Mismatched frequencies for '18:34973878' f[G,A] = [0.7593002,0.2406998] vs [0.9416,0.0584], chisq 1998.087
## Mismatched frequencies for '18:45623756' f[A,G] = [0.6183192,0.3816808] vs [0.7781,0.2219], chisq 642.0536
## Mismatched frequencies for '18:46344160' f[G,A] = [0.8904236,0.1095764] vs [0.9759,0.0241], chisq 970.4066
## Mismatched frequencies for '18:47620148' f[A,G] = [0.8103575,0.1896425] vs [0.9955,0.0045], chisq 5303.64
## Mismatched frequencies for '18:49891896' f[T,G] = [0.8546961,0.1453039] vs [0.9964,0.0036], chisq 4003.831
## Mismatched frequencies for '18:53067156' f[C,A] = [0.9439735,0.05602654] vs [0.9935,0.0065], chisq 850.6042
## Mismatched frequencies for '18:55316084' f[T,G] = [0.8661374,0.1338626] vs [0.9584,0.0416], chisq 762.9719
## Mismatched frequencies for '18:64219695' f[G,T] = [0.8398076,0.1601924] vs [0.977,0.023], chisq 2139.603
## Mismatched frequencies for '18:64271545' f[C,T] = [0.2659418,0.7340583] vs [0.4528,0.5472], chisq 663.8343
## Mismatched frequencies for '18:71518518' f[T,G] = [0.8871265,0.1128735] vs [0.998,0.002], chisq 3255.186
## Mismatched frequencies for '18:72083984' f[G,T] = [0.8222591,0.1777409] vs [0.9997,3e-04], chisq 5844.228
## Mismatched frequencies for '18:73521219' f[G,A] = [0.9277286,0.07227138] vs [0.9886,0.0114], chisq 873.7905
## Mismatched frequencies for '18:74393013' f[C,T] = [0.893186,0.106814] vs [0.9671,0.0329], chisq 610.9692
## Mismatched frequencies for '18:75169284' f[A,G] = [0.8899814,0.1100186] vs [0.9821,0.0179], chisq 1305.272
## Mismatched frequencies for '19:1309768' f[G,A] = [0.9353353,0.0646647] vs [0.9999,1e-04], chisq 2093.557
## Mismatched frequencies for '19:6636337' f[G,T] = [0.8759259,0.1240741] vs [0.9994,6e-04], chisq 3948.976
## Mismatched frequencies for '19:6832750' f[T,C] = [0.8017686,0.1982314] vs [0.9201,0.0799], chisq 744.4808
## Mismatched frequencies for '19:10689184' f[A,C] = [0.7904357,0.2095643] vs [0.9219,0.0781], chisq 916.7774
## Mismatched frequencies for '19:13955915' f[A,G] = [0.9066765,0.0933235] vs [0.9754,0.0246], chisq 659.9924
## Mismatched frequencies for '19:14991076' f[G,A] = [0.9288873,0.07111275] vs [0.9969,0.0031], chisq 1697.043
## Mismatched frequencies for '19:20789078' f[C,A] = [0.893186,0.106814] vs [0.9826,0.0174], chisq 1269.458
## Mismatched frequencies for '19:22280532' f[T,G] = [0.8256543,0.1743457] vs [0.9913,0.0087], chisq 4066.898
## Mismatched frequencies for '19:22735073' f[C,A] = [0.9681282,0.03187178] vs [0.9969,0.0031], chisq 537.0272
## Mismatched frequencies for '19:31384488' f[A,G] = [0.7530409,0.2469591] vs [0.9396,0.0604], chisq 2034.731
## Mismatched frequencies for '19:34163103' f[T,G] = [0.8043882,0.1956118] vs [0.9996,4e-04], chisq 6429.333
## Mismatched frequencies for '19:38498107' f[G,A] = [0.2737832,0.7262168] vs [0.4483,0.5517], chisq 579.8322
## Mismatched frequencies for '19:38717143' f[T,C] = [0.756174,0.243826] vs [0.8584,0.1416], chisq 368.5425
## Mismatched frequencies for '19:38984156' f[G,T] = [0.9288348,0.07116519] vs [0.9772,0.0228], chisq 376.9743
## Mismatched frequencies for '19:41362293' f[C,T] = [0.9996285,0.000371471] vs [0.9142,0.0858], chisq 494.011
## Mismatched frequencies for '19:41385223' f[A,G] = [0.8482707,0.1517293] vs [0.999,0.001], chisq 4783.089
## Mismatched frequencies for '19:41514965' f[G,C] = [0.9664578,0.0335422] vs [0.994,0.006], chisq 358.233
## Mismatched frequencies for '19:47007765' f[T,G] = [0.8167587,0.1832412] vs [0.9902,0.0098], chisq 4183.781
## Mismatched frequencies for '19:48077683' f[G,A] = [0.9229919,0.07700811] vs [0.9957,0.0043], chisq 1695.845
## Mismatched frequencies for '19:49292195' f[A,G] = [0.8157798,0.1842203] vs [0.9975,0.0025], chisq 5539.843
## Mismatched frequencies for '19:54087036' f[A,C] = [0.7621793,0.2378207] vs [0.9574,0.0426], chisq 2688.974
## Mismatched frequencies for '19:54667709' f[C,T] = [0.9742078,0.02579219] vs [0.9989,0.0011], chisq 614.3924
## Mismatched frequencies for '19:55146469' f[G,A] = [0.8545691,0.1454309] vs [0.9981,0.0019], chisq 4360.94
## Mismatched frequencies for '19:55301811' f[T,C] = [0.8486915,0.1513085] vs [0.9892,0.0108], chisq 3063.37
## Mismatched frequencies for '19:55400759' f[C,A] = [0.7720073,0.2279926] vs [0.9143,0.0857], chisq 993.2352
## Mismatched frequencies for '19:56027548' f[C,A] = [0.9098451,0.09015486] vs [0.9931,0.0069], chisq 1744.839
## Mismatched frequencies for '19:57664628' f[G,T] = [0.7741519,0.2258481] vs [0.88,0.12], chisq 445.4909
## Mismatched frequencies for '2:318841' f[A,G] = [0.9298084,0.0701916] vs [0.9991,9e-04], chisq 2085.403
## Mismatched frequencies for '2:6212390' f[T,G] = [0.9578114,0.04218865] vs [0.9969,0.0031], chisq 824.0536
## Mismatched frequencies for '2:11727820' f[A,C] = [0.8403981,0.1596019] vs [0.9985,0.0015], chisq 4933.63
## Mismatched frequencies for '2:11831210' f[G,T] = [0.7891344,0.2108656] vs [0.983,0.017], chisq 4087.885
## Mismatched frequencies for '2:20201922' f[T,C] = [0.8943584,0.1056416] vs [0.9814,0.0186], chisq 1170.047
## Mismatched frequencies for '2:20329452' f[A,G] = [0.9146701,0.08532989] vs [0.9971,0.0029], chisq 2180.629
## Mismatched frequencies for '2:21239918' f[G,T] = [0.6169429,0.3830571] vs [0.7838,0.2162], chisq 709.866
## Mismatched frequencies for '2:21955299' f[G,T] = [0.9166974,0.08330262] vs [0.9888,0.0112], chisq 1147.632
## Mismatched frequencies for '2:23764642' f[C,A] = [0.8347458,0.1652542] vs [0.9868,0.0132], chisq 3185.431
## Mismatched frequencies for '2:25445383' f[A,G] = [0.8077773,0.1922226] vs [0.9706,0.0294], chisq 2468.298
## Mismatched frequencies for '2:28657896' f[A,C] = [0.7734868,0.2265132] vs [0.8718,0.1282], chisq 366.0863
## Mismatched frequencies for '2:30008317' f[A,C] = [0.9710759,0.0289241] vs [0.9986,0.0014], chisq 663.0399
## Mismatched frequencies for '2:31751175' f[G,A] = [0.8645411,0.1354589] vs [0.9997,3e-04], chisq 4408.247
## Mismatched frequencies for '2:33878355' f[A,G] = [0.3102432,0.6897568] vs [0.4602,0.5398], chisq 424.6888
## Mismatched frequencies for '2:35128956' f[T,G] = [0.4747046,0.5252954] vs [0.6636,0.3364], chisq 715.9317
## Mismatched frequencies for '2:35533496' f[A,C] = [0.8750921,0.1249079] vs [0.9758,0.0242], chisq 1270.228
## Mismatched frequencies for '2:35567136' f[G,T] = [0.9712707,0.02872928] vs [0.9994,6e-04], chisq 798.6975
## Mismatched frequencies for '2:35945699' f[A,G] = [0.9977745,0.002225519] vs [0.9178,0.0822], chisq 449.4987
## Mismatched frequencies for '2:36104614' f[G,T] = [0.7352399,0.2647601] vs [0.859,0.141], chisq 532.8234
## Mismatched frequencies for '2:37160230' f[T,C] = [0.954847,0.04515297] vs [0.9979,0.0021], chisq 1051.402
## Mismatched frequencies for '2:45178004' f[A,G] = [0.8863301,0.1136699] vs [0.9942,0.0058], chisq 2601.829
## Mismatched frequencies for '2:45244774' f[A,C] = [0.9778842,0.02211574] vs [0.9986,0.0014], chisq 458.9607
## Mismatched frequencies for '2:56397537' f[A,C] = [0.8281768,0.1718232] vs [0.9214,0.0786], chisq 484.1757
## Mismatched frequencies for '2:56569334' f[T,C] = [0.7838187,0.2161813] vs [0.9406,0.0594], chisq 1520.667
## Mismatched frequencies for '2:58759103' f[C,T] = [0.532264,0.467736] vs [0.6842,0.3158], chisq 479.8032
## Mismatched frequencies for '2:61366095' f[T,C] = [0.9926281,0.007371913] vs [0.9306,0.0694], chisq 314.6064
## Mismatched frequencies for '2:66315223' f[G,T] = [0.9998145,0.0001854599] vs [0.9095,0.0905], chisq 526.7051
## Mismatched frequencies for '2:85085701' f[G,T] = [0.992565,0.007434944] vs [0.9039,0.0961], chisq 474.1308
## Mismatched frequencies for '2:100952071' f[G,A] = [0.9751289,0.02487104] vs [0.9991,9e-04], chisq 619.3667
## Mismatched frequencies for '2:109317344' f[C,T] = [0.9734792,0.02652077] vs [0.9993,7e-04], chisq 707.4199
## Mismatched frequencies for '2:111721180' f[G,T] = [0.8893186,0.1106814] vs [0.9899,0.0101], chisq 1968.357
## Mismatched frequencies for '2:112476639' f[G,A] = [0.8430361,0.1569639] vs [0.9972,0.0028], chisq 4555.715
## Mismatched frequencies for '2:117151807' f[T,C] = [0.9537754,0.04622468] vs [0.9978,0.0022], chisq 1068.918
## Mismatched frequencies for '2:119221366' f[T,C] = [0.8705209,0.1294791] vs [0.999,0.001], chisq 4034.355
## Mismatched frequencies for '2:119912814' f[A,G] = [0.4090239,0.5909761] vs [0.2884,0.7116], chisq 318.9199
## Mismatched frequencies for '2:121553124' f[A,C] = [0.8871087,0.1128913] vs [0.9977,0.0023], chisq 3193.669
## Mismatched frequencies for '2:122390604' f[A,G] = [0.8932397,0.1067603] vs [0.9895,0.0105], chisq 1816.662
## Mismatched frequencies for '2:131598962' f[T,G] = [0.9435841,0.05641593] vs [0.9996,4e-04], chisq 1747.117
## Mismatched frequencies for '2:135070664' f[T,C] = [0.8352985,0.1647016] vs [0.9974,0.0026], chisq 4858.809
## Mismatched frequencies for '2:135592905' f[A,G] = [0.9520726,0.04792746] vs [0.994,0.006], chisq 687.9335
## Mismatched frequencies for '2:135837906' f[C,A] = [0.3780893,0.6219107] vs [0.5224,0.4776], chisq 387.0409
## Mismatched frequencies for '2:136407479' f[A,G] = [0.430704,0.569296] vs [0.5689,0.4311], chisq 358.6163
## Mismatched frequencies for '2:136608646' f[G,A] = [0.6054184,0.3945817] vs [0.462,0.538], chisq 382.9731
## Mismatched frequencies for '2:136707982' f[T,C] = [0.3983051,0.6016949] vs [0.5383,0.4617], chisq 365.0643
## Mismatched frequencies for '2:136808949' f[C,T] = [0.5707182,0.4292818] vs [0.4403,0.5597], chisq 318.6484
## Mismatched frequencies for '2:136817088' f[C,T] = [0.5819823,0.4180177] vs [0.4502,0.5498], chisq 324.2982
## Mismatched frequencies for '2:137015991' f[G,A] = [0.6320059,0.3679941] vs [0.504,0.496], chisq 305.2235
## Mismatched frequencies for '2:140680731' f[A,G] = [0.8642752,0.1357249] vs [0.9964,0.0036], chisq 3685.368
## Mismatched frequencies for '2:151528935' f[G,T] = [0.9714549,0.02854512] vs [0.9978,0.0022], chisq 543.6799
## Mismatched frequencies for '2:173436552' f[T,G] = [0.8404648,0.1595352] vs [0.9941,0.0059], chisq 4045.812
## Mismatched frequencies for '2:174923413' f[C,T] = [0.5356215,0.4643785] vs [0.6973,0.3027], chisq 550.1887
## Mismatched frequencies for '2:177108862' f[C,A] = [0.3295161,0.670484] vs [0.4657,0.5343], chisq 348.2624
## Mismatched frequencies for '2:177316556' f[T,C] = [0.6176795,0.3823204] vs [0.7989,0.2011], chisq 870.4939
## Mismatched frequencies for '2:179300979' f[A,T] = [0.857986,0.142014] vs [0.9775,0.0225], chisq 1744.899
## Mismatched frequencies for '2:179315031' f[T,C] = [0.9273299,0.07267012] vs [0.997,0.003], chisq 1760.809
## Mismatched frequencies for '2:181670372' f[G,A] = [0.7701806,0.2298194] vs [0.9507,0.0493], chisq 2179.877
## Mismatched frequencies for '2:181935270' f[G,A] = [0.9235446,0.07645541] vs [0.9994,6e-04], chisq 2361.192
## Mismatched frequencies for '2:190726141' f[T,C] = [0.9661017,0.0338983] vs [0.9959,0.0041], chisq 497.6471
## Mismatched frequencies for '2:193171479' f[C,T] = [0.8855932,0.1144068] vs [0.9476,0.0524], chisq 310.8298
## Mismatched frequencies for '2:203715914' f[G,A] = [0.9998143,0.0001856665] vs [0.8751,0.1249], chisq 751.0244
## Mismatched frequencies for '2:205089963' f[T,G] = [0.314528,0.685472] vs [0.4667,0.5333], chisq 435.7764
## Mismatched frequencies for '2:215759700' f[G,A] = [0.9474558,0.05254425] vs [0.9996,4e-04], chisq 1619.738
## Mismatched frequencies for '2:222139184' f[A,G] = [0.651997,0.348003] vs [0.7672,0.2328], chisq 328.7994
## Mismatched frequencies for '2:222285462' f[C,A] = [0.8212695,0.1787305] vs [0.999,0.001], chisq 5701.357
## Mismatched frequencies for '2:224776285' f[A,C] = [0.9314917,0.06850829] vs [0.9837,0.0163], chisq 546.2138
## Mismatched frequencies for '2:232779515' f[C,A] = [0.3838028,0.6161972] vs [0.5698,0.4302], chisq 645.1282
## Mismatched frequencies for '2:234888201' f[A,G] = [0.9162362,0.08376384] vs [0.9954,0.0046], chisq 1857.499
## Mismatched frequencies for '2:235827713' f[C,T] = [0.9169134,0.0830866] vs [0.9885,0.0115], chisq 1117.66
## Mismatched frequencies for '2:238454154' f[C,A] = [0.8930018,0.1069982] vs [0.9824,0.0176], chisq 1261.014
## Mismatched frequencies for '2:241403957' f[G,A] = [0.3996317,0.6003683] vs [0.5771,0.4229], chisq 592.3907
## Mismatched frequencies for '20:1895533' f[T,C] = [0.6307551,0.3692449] vs [0.8285,0.1715], chisq 1137.65
## Mismatched frequencies for '20:5811349' f[A,C] = [0.8175102,0.1824898] vs [0.9886,0.0114], chisq 3929.654
## Mismatched frequencies for '20:6252843' f[G,A] = [0.9959289,0.004071059] vs [0.8842,0.1158], chisq 643.4185
## Mismatched frequencies for '20:12444542' f[A,G] = [0.999628,0.0003720238] vs [0.9051,0.0949], chisq 550.7313
## Mismatched frequencies for '20:12617533' f[T,C] = [0.9213048,0.07869517] vs [0.9723,0.0277], chisq 357.9422
## Mismatched frequencies for '20:14950049' f[T,C] = [0.8593634,0.1406366] vs [0.9511,0.0489], chisq 670.5279
## Mismatched frequencies for '20:18732516' f[G,T] = [0.007927729,0.9920723] vs [0.1143,0.8857], chisq 589.1671
## Mismatched frequencies for '20:18912178' f[G,A] = [0.8046529,0.1953471] vs [0.9858,0.0142], chisq 3957.465
## Mismatched frequencies for '20:20365805' f[G,A] = [0.2307551,0.7692449] vs [0.4249,0.5751], chisq 732.4123
## Mismatched frequencies for '20:22780399' f[T,G] = [0.4965009,0.5034991] vs [0.6631,0.3369], chisq 559.8879
## Mismatched frequencies for '20:36050591' f[T,C] = [0.8135593,0.1864407] vs [0.9687,0.0313], chisq 2209.671
## Mismatched frequencies for '20:37442410' f[C,T] = [0.8956409,0.1043591] vs [0.9871,0.0129], chisq 1534.431
## Mismatched frequencies for '20:39280362' f[G,A] = [0.8071823,0.1928177] vs [0.9938,0.0062], chisq 5086.383
## Mismatched frequencies for '20:40903221' f[G,A] = [0.4690494,0.5309506] vs [0.6511,0.3489], chisq 657.6439
## Mismatched frequencies for '20:46604871' f[T,C] = [0.5784531,0.421547] vs [0.7736,0.2264], chisq 934.0917
## Mismatched frequencies for '20:52166009' f[C,A] = [0.5552272,0.4447728] vs [0.7297,0.2703], chisq 678.8737
## Mismatched frequencies for '20:54711343' f[A,G] = [0.9469613,0.05303868] vs [0.9987,0.0013], chisq 1441.855
## Mismatched frequencies for '20:56356334' f[C,T] = [0.9360958,0.06390423] vs [0.9996,4e-04], chisq 1994.088
## Mismatched frequencies for '21:11098723' f[T,C] = [0.9651034,0.0348966] vs [0.8184,0.1816], chisq 740.9464
## Mismatched frequencies for '21:15169567' f[C,T] = [0.9530387,0.04696133] vs [0.9935,0.0065], chisq 627.0451
## Mismatched frequencies for '21:15170635' f[A,G] = [0.1959484,0.8040516] vs [0.3593,0.6407], chisq 556.4786
## Mismatched frequencies for '21:15669405' f[G,A] = [0.5092971,0.4907029] vs [0.6404,0.3596], chisq 337.209
## Mismatched frequencies for '21:16874536' f[A,G] = [0.9987071,0.001292944] vs [0.928,0.072], chisq 399.5411
## Mismatched frequencies for '21:18297514' f[G,A] = [0.1979742,0.8020258] vs [0.3208,0.6792], chisq 332.187
## Mismatched frequencies for '21:18816332' f[A,G] = [0.2539595,0.7460405] vs [0.3993,0.6007], chisq 417.753
## Mismatched frequencies for '21:20442472' f[G,T] = [0.9990748,0.0009252406] vs [0.9267,0.0733], chisq 411.2655
## Mismatched frequencies for '21:20493139' f[T,C] = [0.2952118,0.7047882] vs [0.4218,0.5782], chisq 309.6839
## Mismatched frequencies for '21:22063689' f[T,C] = [0.9987003,0.001299666] vs [0.9427,0.0573], chisq 308.911
## Mismatched frequencies for '21:29559016' f[C,A] = [0.8238113,0.1761887] vs [0.9965,0.0035], chisq 5054.579
## Mismatched frequencies for '21:32526042' f[T,C] = [0.8069981,0.1930018] vs [0.9563,0.0437], chisq 1704.059
## Mismatched frequencies for '21:41547707' f[T,C] = [0.619337,0.380663] vs [0.8079,0.1921], chisq 966.7085
## Mismatched frequencies for '21:41958912' f[G,A] = [0.999262,0.0007380074] vs [0.9349,0.0651], chisq 364.6155
## Mismatched frequencies for '21:42775180' f[C,T] = [0.09675636,0.9032437] vs [0.2416,0.7584], chisq 566.8046
## Mismatched frequencies for '21:44045352' f[T,C] = [0.8392265,0.1607735] vs [0.9739,0.0261], chisq 1947.046
## Mismatched frequencies for '21:44712163' f[A,G] = [0.9994428,0.0005572065] vs [0.9137,0.0863], chisq 494.8379
## Mismatched frequencies for '21:45467448' f[C,T] = [0.9168817,0.08311832] vs [0.9801,0.0199], chisq 660.9064
## Mismatched frequencies for '21:47243636' f[G,T] = [0.8364641,0.1635359] vs [0.9208,0.0792], chisq 398.8867
## Mismatched frequencies for '22:17169522' f[G,A] = [0.249815,0.7501851] vs [0.3795,0.6205], chisq 337.777
## Mismatched frequencies for '22:17845261' f[A,G] = [0.8424556,0.1575444] vs [0.9994,6e-04], chisq 5079.967
## Mismatched frequencies for '22:18441463' f[G,T] = [0.6057196,0.3942804] vs [0.7565,0.2435], chisq 542.0534
## Mismatched frequencies for '22:19900957' f[A,G] = [0.9767955,0.02320442] vs [0.9995,5e-04], chisq 641.4006
## Mismatched frequencies for '22:20299869' f[C,T] = [0.9777082,0.02229182] vs [0.9997,3e-04], chisq 654.2346
## Mismatched frequencies for '22:25415890' f[C,A] = [0.9349669,0.06503316] vs [0.9973,0.0027], chisq 1572.271
## Mismatched frequencies for '22:31181571' f[C,A] = [0.2562638,0.7437362] vs [0.3851,0.6149], chisq 332.4203
## Mismatched frequencies for '22:33056859' f[C,T] = [0.8243094,0.1756906] vs [0.9599,0.0401], chisq 1527.73
## Mismatched frequencies for '22:33084511' f[A,C] = [0.9475138,0.05248619] vs [0.9973,0.0027], chisq 1184.317
## Mismatched frequencies for '22:38922579' f[T,C] = [0.9606721,0.03932792] vs [0.9954,0.0046], chisq 590.9484
## Mismatched frequencies for '22:45253112' f[G,A] = [0.8837509,0.1162491] vs [0.9496,0.0504], chisq 358.4848
## Mismatched frequencies for '22:47308426' f[A,G] = [0.9506264,0.04937362] vs [0.9951,0.0049], chisq 825.4992
## Mismatched frequencies for '22:47788384' f[A,C] = [0.9864965,0.01350351] vs [0.9993,7e-04], chisq 301.3507
## Mismatched frequencies for '22:48327863' f[C,A] = [0.9802874,0.0197126] vs [0.9988,0.0012], chisq 415.4198
## Mismatched frequencies for '3:1583411' f[C,T] = [0.9998145,0.0001854599] vs [0.9144,0.0856], chisq 495.8018
## Mismatched frequencies for '3:2700645' f[A,G] = [0.9141172,0.08588278] vs [0.979,0.021], chisq 666.3256
## Mismatched frequencies for '3:6680165' f[G,T] = [0.9904023,0.009597638] vs [0.9142,0.0858], chisq 389.1077
## Mismatched frequencies for '3:7317938' f[A,G] = [0.584752,0.415248] vs [0.707,0.293], chisq 323.4356
## Mismatched frequencies for '3:10444620' f[C,T] = [0.8990792,0.1009208] vs [0.9673,0.0327], chisq 532.3556
## Mismatched frequencies for '3:10578018' f[T,C] = [0.9483395,0.05166051] vs [0.9958,0.0042], chisq 962.6353
## Mismatched frequencies for '3:24546691' f[A,G] = [0.859882,0.140118] vs [0.9516,0.0484], chisq 677.0886
## Mismatched frequencies for '3:24939243' f[C,T] = [0.9615101,0.03848987] vs [0.9936,0.0064], chisq 440.4379
## Mismatched frequencies for '3:26368500' f[G,A] = [0.8313075,0.1686924] vs [0.9864,0.0136], chisq 3239.934
## Mismatched frequencies for '3:26464551' f[G,T] = [0.8529845,0.1470155] vs [0.9681,0.0319], chisq 1338.379
## Mismatched frequencies for '3:29953474' f[C,A] = [0.948513,0.05148699] vs [0.99,0.01], chisq 507.7709
## Mismatched frequencies for '3:33428299' f[G,A] = [0.5565794,0.4434206] vs [0.7219,0.2781], chisq 603.0414
## Mismatched frequencies for '3:38787591' f[T,G] = [0.492815,0.507185] vs [0.6484,0.3516], chisq 480.8942
## Mismatched frequencies for '3:39812041' f[A,C] = [0.879558,0.120442] vs [0.9994,6e-04], chisq 3827.903
## Mismatched frequencies for '3:46071550' f[G,T] = [0.6118494,0.3881506] vs [0.7848,0.2152], chisq 761.5933
## Mismatched frequencies for '3:56431391' f[A,G] = [0.9679204,0.03207964] vs [0.9999,1e-04], chisq 1020.955
## Mismatched frequencies for '3:61606709' f[A,G] = [0.7405156,0.2594843] vs [0.878,0.122], chisq 723.0137
## Mismatched frequencies for '3:69065410' f[G,T] = [0.8101406,0.1898594] vs [0.9084,0.0916], chisq 473.5176
## Mismatched frequencies for '3:71082756' f[A,C] = [0.9235164,0.0764836] vs [0.9988,0.0012], chisq 2226.257
## Mismatched frequencies for '3:72974311' f[C,T] = [0.9720991,0.02790096] vs [0.9955,0.0045], chisq 326.4394
## Mismatched frequencies for '3:78483401' f[A,C] = [0.3291466,0.6708533] vs [0.4844,0.5156], chisq 449.9602
## Mismatched frequencies for '3:80293231' f[G,T] = [0.9686347,0.03136531] vs [0.9977,0.0023], chisq 611.5683
## Mismatched frequencies for '3:81442057' f[G,A] = [0.7244936,0.2755064] vs [0.9161,0.0839], chisq 1725.981
## Mismatched frequencies for '3:86556379' f[T,C] = [0.7039911,0.2960089] vs [0.9012,0.0988], chisq 1627.487
## Mismatched frequencies for '3:96548826' f[C,T] = [0.9155217,0.08447827] vs [0.9675,0.0325], chisq 325.85
## Mismatched frequencies for '3:104844377' f[A,G] = [0.9684386,0.03156146] vs [0.9958,0.0042], chisq 431.9868
## Mismatched frequencies for '3:105697974' f[T,C] = [0.7029466,0.2970534] vs [0.8244,0.1756], chisq 440.5853
## Mismatched frequencies for '3:112941557' f[T,G] = [0.8295873,0.1704127] vs [0.9256,0.0744], chisq 533.3475
## Mismatched frequencies for '3:115908975' f[C,T] = [0.938283,0.06171702] vs [0.9948,0.0052], chisq 1132.393
## Mismatched frequencies for '3:128193917' f[A,C] = [0.798895,0.201105] vs [0.9502,0.0498], chisq 1604.672
## Mismatched frequencies for '3:132530858' f[G,A] = [0.8600663,0.1399336] vs [0.9857,0.0143], chisq 2348.145
## Mismatched frequencies for '3:138999076' f[G,T] = [0.9224678,0.07753223] vs [0.9995,5e-04], chisq 2420.759
## Mismatched frequencies for '3:141449145' f[G,A] = [0.9579956,0.04200442] vs [0.9999,1e-04], chisq 1346.554
## Mismatched frequencies for '3:151150968' f[T,G] = [0.1264283,0.8735717] vs [0.2391,0.7609], chisq 340.6571
## Mismatched frequencies for '3:155458211' f[A,G] = [0.8746775,0.1253225] vs [0.989,0.011], chisq 2282.588
## Mismatched frequencies for '3:168901549' f[T,C] = [0.9391144,0.06088561] vs [0.999,0.001], chisq 1758.041
## Mismatched frequencies for '3:170727703' f[T,G] = [0.8322284,0.1677716] vs [0.968,0.032], chisq 1757.104
## Mismatched frequencies for '3:171001121' f[C,T] = [0.889237,0.110763] vs [0.9581,0.0419], chisq 449.1886
## Mismatched frequencies for '3:171422248' f[G,A] = [0.9690494,0.03095063] vs [0.9993,7e-04], chisq 849.8951
## Mismatched frequencies for '3:173402813' f[C,T] = [0.8289135,0.1710866] vs [0.9996,4e-04], chisq 5591.985
## Mismatched frequencies for '3:177061567' f[G,T] = [0.9097967,0.09020333] vs [0.9835,0.0165], chisq 957.9803
## Mismatched frequencies for '3:184498202' f[G,T] = [0.5343228,0.4656772] vs [0.6819,0.3181], chisq 449.22
## Mismatched frequencies for '3:184612321' f[C,T] = [0.644174,0.355826] vs [0.8419,0.1581], chisq 1198.116
## Mismatched frequencies for '3:187295684' f[C,A] = [0.8133063,0.1866937] vs [0.9767,0.0233], chisq 2788.288
## Mismatched frequencies for '3:192745177' f[G,A] = [0.9966642,0.003335804] vs [0.9373,0.0627], chisq 317.8703
## Mismatched frequencies for '3:194082867' f[A,G] = [0.8588279,0.1411721] vs [0.9983,0.0017], chisq 4265.826
## Mismatched frequencies for '3:194268752' f[T,C] = [0.9664455,0.03355457] vs [0.9987,0.0013], chisq 822.0626
## Mismatched frequencies for '3:196572223' f[C,T] = [0.9021018,0.09789823] vs [0.9938,0.0062], chisq 2062.061
## Mismatched frequencies for '4:7847611' f[G,T] = [0.198813,0.8011869] vs [0.383,0.617], chisq 683.5841
## Mismatched frequencies for '4:8002879' f[G,A] = [0.9948282,0.005171777] vs [0.9286,0.0714], chisq 350.3158
## Mismatched frequencies for '4:10726853' f[C,T] = [0.5267133,0.4732867] vs [0.7086,0.2914], chisq 710.0634
## Mismatched frequencies for '4:17135087' f[A,G] = [0.8025783,0.1974217] vs [0.9976,0.0024], chisq 6013.932
## Mismatched frequencies for '4:19166746' f[A,G] = [0.9555842,0.04441578] vs [0.9984,0.0016], chisq 1111.075
## Mismatched frequencies for '4:23921186' f[G,A] = [0.3566421,0.6433579] vs [0.5262,0.4738], chisq 534.1457
## Mismatched frequencies for '4:27899752' f[A,G] = [0.8116667,0.1883333] vs [0.9983,0.0017], chisq 5862.09
## Mismatched frequencies for '4:31657240' f[C,A] = [0.954159,0.04584104] vs [0.9991,9e-04], chisq 1289.218
## Mismatched frequencies for '4:35472244' f[G,A] = [0.9974074,0.002592593] vs [0.9298,0.0702], chisq 371.9776
## Mismatched frequencies for '4:37876568' f[T,C] = [0.9741983,0.0258017] vs [0.9976,0.0024], chisq 445.2956
## Mismatched frequencies for '4:38244953' f[T,G] = [0.985267,0.01473297] vs [0.9999,1e-04], chisq 454.4992
## Mismatched frequencies for '4:38859287' f[C,A] = [0.9817073,0.01829268] vs [0.9991,9e-04], chisq 415.987
## Mismatched frequencies for '4:39107393' f[C,T] = [0.7987828,0.2012173] vs [0.9569,0.0431], chisq 1891.676
## Mismatched frequencies for '4:41640131' f[G,T] = [0.884261,0.115739] vs [0.9992,8e-04], chisq 3621.558
## Mismatched frequencies for '4:57708317' f[A,G] = [0.9037256,0.09627444] vs [0.999,0.001], chisq 2924.95
## Mismatched frequencies for '4:62618962' f[A,C] = [0.9664068,0.03359317] vs [0.996,0.004], chisq 496.9138
## Mismatched frequencies for '4:73969545' f[G,T] = [0.5677777,0.4322222] vs [0.7092,0.2908], chisq 432.178
## Mismatched frequencies for '4:74113644' f[G,A] = [0.822449,0.177551] vs [0.994,0.006], chisq 4612.016
## Mismatched frequencies for '4:76495410' f[A,C] = [0.9051756,0.0948244] vs [0.9997,3e-04], chisq 3044.499
## Mismatched frequencies for '4:77453721' f[T,C] = [0.9288086,0.07119145] vs [0.9907,0.0093], chisq 998.3675
## Mismatched frequencies for '4:82007776' f[C,A] = [0.934411,0.065589] vs [0.9883,0.0117], chisq 706.1119
## Mismatched frequencies for '4:84628680' f[A,C] = [0.7713864,0.2286136] vs [0.966,0.034], chisq 3033.367
## Mismatched frequencies for '4:88751987' f[A,G] = [0.2276243,0.7723757] vs [0.4264,0.5736], chisq 767.2186
## Mismatched frequencies for '4:94970723' f[C,T] = [0.8794758,0.1205242] vs [0.9557,0.0443], chisq 517.2797
## Mismatched frequencies for '4:95823239' f[G,T] = [0.7897162,0.2102838] vs [0.8979,0.1021], chisq 524.3881
## Mismatched frequencies for '4:96731197' f[C,T] = [0.911557,0.08844296] vs [0.7429,0.2571], chisq 734.5812
## Mismatched frequencies for '4:100388330' f[C,T] = [0.976059,0.02394107] vs [0.9968,0.0032], chisq 326.2837
## Mismatched frequencies for '4:118337584' f[C,T] = [0.8552388,0.1447612] vs [0.9364,0.0636], chisq 438.8069
## Mismatched frequencies for '4:120757124' f[A,C] = [0.9740332,0.02596685] vs [0.9963,0.0037], chisq 337.0782
## Mismatched frequencies for '4:123183343' f[A,G] = [0.8174282,0.1825718] vs [0.9206,0.0794], chisq 580.2835
## Mismatched frequencies for '4:125063546' f[T,C] = [0.9596685,0.04033149] vs [0.9998,2e-04], chisq 1266.804
## Mismatched frequencies for '4:125173747' f[C,T] = [0.4525305,0.5474695] vs [0.6207,0.3793], chisq 545.31
## Mismatched frequencies for '4:131007014' f[A,G] = [0.8588279,0.1411721] vs [0.9963,0.0037], chisq 3847.384
## Mismatched frequencies for '4:138284908' f[A,C] = [0.9546961,0.04530387] vs [0.999,0.001], chisq 1251.958
## Mismatched frequencies for '4:138936342' f[C,A] = [0.9108728,0.08912722] vs [0.9995,5e-04], chisq 2805.236
## Mismatched frequencies for '4:141751415' f[A,C] = [0.8117582,0.1882418] vs [0.9963,0.0037], chisq 5414.926
## Mismatched frequencies for '4:144818875' f[C,T] = [0.9756637,0.02433628] vs [0.9977,0.0023], chisq 416.0574
## Mismatched frequencies for '4:148841275' f[C,T] = [0.9438306,0.05616943] vs [0.9917,0.0083], chisq 714.071
## Mismatched frequencies for '4:157172338' f[A,C] = [0.8841194,0.1158806] vs [0.9993,7e-04], chisq 3650.458
## Mismatched frequencies for '4:159710477' f[G,A] = [0.07447994,0.9255201] vs [0.2729,0.7271], chisq 983.8274
## Mismatched frequencies for '4:169312801' f[A,G] = [0.02430939,0.9756906] vs [0.1429,0.8571], chisq 594.4688
## Mismatched frequencies for '4:170034278' f[C,A] = [0.9097996,0.09020045] vs [0.9903,0.0097], chisq 1446.049
## Mismatched frequencies for '4:175465959' f[C,T] = [0.7092081,0.2907919] vs [0.8438,0.1562], chisq 582.4325
## Mismatched frequencies for '4:181798287' f[A,C] = [0.9043222,0.09567787] vs [0.9928,0.0072], chisq 1867.591
## Mismatched frequencies for '4:182142593' f[T,G] = [0.8645485,0.1354515] vs [0.9866,0.0134], chisq 2307.218
## Mismatched frequencies for '4:183096487' f[T,C] = [0.7524862,0.2475138] vs [0.8641,0.1359], chisq 449.878
## Mismatched frequencies for '4:184470393' f[T,G] = [0.9549483,0.0450517] vs [0.999,0.001], chisq 1243.424
## Mismatched frequencies for '4:186390630' f[C,A] = [0.9202578,0.07974217] vs [0.9984,0.0016], chisq 2248.781
## Mismatched frequencies for '4:186935764' f[A,G] = [0.998886,0.001113999] vs [0.8929,0.1071], chisq 621.0825
## Mismatched frequencies for '4:190247855' f[T,C] = [0.908404,0.09159602] vs [0.9997,3e-04], chisq 2937.151
## Mismatched frequencies for '4:190283077' f[G,A] = [0.8804348,0.1195652] vs [0.9997,3e-04], chisq 3873.025
## Mismatched frequencies for '5:748477' f[A,C] = [0.1662366,0.8337634] vs [0.2992,0.7008], chisq 407.5572
## Mismatched frequencies for '5:2286458' f[G,A] = [0.7483407,0.2516593] vs [0.8949,0.1051], chisq 906.0382
## Mismatched frequencies for '5:9438352' f[C,T] = [0.8033149,0.1966851] vs [0.9992,8e-04], chisq 6367.916
## Mismatched frequencies for '5:11480758' f[A,G] = [0.5521755,0.4478245] vs [0.7496,0.2504], chisq 901.198
## Mismatched frequencies for '5:14757522' f[C,T] = [0.4262809,0.5737191] vs [0.6233,0.3767], chisq 748.9355
## Mismatched frequencies for '5:19493648' f[T,G] = [0.9845076,0.01549244] vs [0.999,0.001], chisq 318.4547
## Mismatched frequencies for '5:26327175' f[A,G] = [0.9582718,0.04172821] vs [0.9988,0.0012], chisq 1097.835
## Mismatched frequencies for '5:32008015' f[A,G] = [0.7904779,0.209522] vs [0.6323,0.3677], chisq 512.3701
## Mismatched frequencies for '5:33449463' f[T,G] = [0.8570638,0.1429362] vs [0.974,0.026], chisq 1553.104
## Mismatched frequencies for '5:34668797' f[A,G] = [0.4706967,0.5293034] vs [0.6598,0.3402], chisq 715.4186
## Mismatched frequencies for '5:35141354' f[C,A] = [0.933493,0.066507] vs [0.9982,0.0018], chisq 1779.025
## Mismatched frequencies for '5:36327176' f[G,A] = [0.9360015,0.06399853] vs [0.9969,0.0031], chisq 1475.949
## Mismatched frequencies for '5:37245452' f[T,C] = [0.8062431,0.1937569] vs [0.9883,0.0117], chisq 4237.512
## Mismatched frequencies for '5:38101390' f[A,G] = [0.8629834,0.1370166] vs [0.9853,0.0147], chisq 2231.786
## Mismatched frequencies for '5:40621583' f[T,C] = [0.8176449,0.1823551] vs [0.9865,0.0135], chisq 3654.184
## Mismatched frequencies for '5:43770854' f[G,T] = [0.9981481,0.001851852] vs [0.9231,0.0769], chisq 421.849
## Mismatched frequencies for '5:66481157' f[G,A] = [0.9419593,0.05804066] vs [0.9835,0.0165], chisq 364.9103
## Mismatched frequencies for '5:76894481' f[G,T] = [0.3354244,0.6645756] vs [0.5351,0.4649], chisq 740.869
## Mismatched frequencies for '5:78108455' f[T,C] = [0.9139646,0.08603537] vs [0.9921,0.0079], chisq 1516.151
## Mismatched frequencies for '5:81182287' f[T,C] = [0.8294031,0.1705969] vs [0.915,0.085], chisq 388.0842
## Mismatched frequencies for '5:89981980' f[G,T] = [0.7184269,0.2815731] vs [0.9028,0.0972], chisq 1457.089
## Mismatched frequencies for '5:108072932' f[T,C] = [0.958011,0.04198895] vs [0.9946,0.0054], chisq 591.5064
## Mismatched frequencies for '5:109344842' f[C,T] = [0.9673552,0.03264478] vs [0.9992,8e-04], chisq 884.3135
## Mismatched frequencies for '5:110522202' f[A,G] = [0.8727306,0.1272694] vs [0.965,0.035], chisq 859.7438
## Mismatched frequencies for '5:112514623' f[T,C] = [0.8970044,0.1029956] vs [0.999,0.001], chisq 3147.977
## Mismatched frequencies for '5:113624228' f[T,C] = [0.8515308,0.1484692] vs [0.9708,0.0292], chisq 1497.817
## Mismatched frequencies for '5:118341125' f[G,A] = [0.8592483,0.1407517] vs [0.9854,0.0146], chisq 2342.018
## Mismatched frequencies for '5:130527727' f[C,T] = [0.8590926,0.1409074] vs [0.9851,0.0149], chisq 2316.489
## Mismatched frequencies for '5:131705588' f[G,A] = [0.9987023,0.001297738] vs [0.926,0.074], chisq 410.2705
## Mismatched frequencies for '5:137978163' f[A,C] = [0.6389605,0.3610394] vs [0.8079,0.1921], chisq 782.7813
## Mismatched frequencies for '5:147054820' f[T,C] = [0.9548137,0.04518628] vs [0.8507,0.1493], chisq 432.8999
## Mismatched frequencies for '5:152776816' f[A,C] = [0.9322628,0.06773717] vs [0.9982,0.0018], chisq 1818.201
## Mismatched frequencies for '5:158357272' f[T,G] = [0.4147601,0.5852398] vs [0.588,0.412], chisq 566.6456
## Mismatched frequencies for '5:159041484' f[C,T] = [0.8211127,0.1788872] vs [0.9987,0.0013], chisq 5636.569
## Mismatched frequencies for '5:159930578' f[G,A] = [0.8946196,0.1053803] vs [0.9996,4e-04], chisq 3371.6
## Mismatched frequencies for '5:163124203' f[C,T] = [0.2887661,0.7112339] vs [0.4542,0.5458], chisq 519.3087
## Mismatched frequencies for '5:165827611' f[G,A] = [0.8891345,0.1108656] vs [0.987,0.013], chisq 1694.697
## Mismatched frequencies for '5:166022645' f[G,T] = [0.8580384,0.1419616] vs [0.9543,0.0457], chisq 769.8556
## Mismatched frequencies for '5:166723557' f[G,A] = [0.844084,0.155916] vs [0.9704,0.0296], chisq 1633.478
## Mismatched frequencies for '5:168399342' f[A,G] = [0.9452837,0.05471629] vs [0.9856,0.0144], chisq 382.4003
## Mismatched frequencies for '5:171653422' f[C,T] = [0.8981209,0.1018791] vs [0.9994,6e-04], chisq 3206.349
## Mismatched frequencies for '5:171791698' f[C,A] = [0.9546961,0.04530387] vs [0.9996,4e-04], chisq 1382.127
## Mismatched frequencies for '5:171958672' f[A,G] = [0.8143757,0.1856243] vs [0.9943,0.0057], chisq 4934.548
## Mismatched frequencies for '5:173608178' f[A,G] = [0.97899,0.02100995] vs [0.9998,2e-04], chisq 635.2167
## Mismatched frequencies for '5:174566016' f[G,A] = [0.8848987,0.1151013] vs [0.99,0.01], chisq 2103.454
## Mismatched frequencies for '5:177676988' f[A,G] = [0.9191285,0.08087149] vs [0.9836,0.0164], chisq 772.9784
## Mismatched frequencies for '5:178748645' f[T,C] = [0.1335175,0.8664825] vs [0.05870003,0.9413], chisq 403.102
## Mismatched frequencies for '5:179759265' f[C,T] = [0.9202147,0.07978526] vs [0.9997,3e-04], chisq 2543.961
## Mismatched frequencies for '6:188937' f[G,A] = [0.8566691,0.1433309] vs [0.9867,0.0133], chisq 2544.332
## Mismatched frequencies for '6:599867' f[T,C] = [0.938768,0.06123202] vs [0.998,0.002], chisq 1572.546
## Mismatched frequencies for '6:1501602' f[A,G] = [0.8228361,0.1771639] vs [0.9821,0.0179], chisq 3020.958
## Mismatched frequencies for '6:2473593' f[A,G] = [0.0001842299,0.9998158] vs [0.09479999,0.9052], chisq 557.7241
## Mismatched frequencies for '6:7538922' f[T,G] = [0.931098,0.06890199] vs [0.9998,2e-04], chisq 2208.489
## Mismatched frequencies for '6:10025300' f[T,C] = [0.8731068,0.1268932] vs [0.9901,0.0099], chisq 2451.228
## Mismatched frequencies for '6:16689290' f[A,G] = [0.8073378,0.1926622] vs [0.9326,0.0674], chisq 934.3461
## Mismatched frequencies for '6:19315140' f[C,T] = [0.8126855,0.1873145] vs [0.9647,0.0353], chisq 1989.665
## Mismatched frequencies for '6:21329307' f[A,C] = [0.9163288,0.08367121] vs [0.9999,1e-04], chisq 2723.934
## Mismatched frequencies for '6:21523115' f[T,C] = [0.8139963,0.1860037] vs [0.9687,0.0313], chisq 2200.09
## Mismatched frequencies for '6:23551683' f[A,C] = [0.9162343,0.08376575] vs [0.9919,0.0081], chisq 1429.953
## Mismatched frequencies for '6:24535208' f[C,A] = [0.9992582,0.0007418398] vs [0.9142,0.0858], chisq 490.1326
## Mismatched frequencies for '6:25005968' f[T,C] = [0.8816372,0.1183628] vs [0.959,0.041], chisq 563.515
## Mismatched frequencies for '6:26556800' f[T,G] = [0.988762,0.01123803] vs [0.9999,1e-04], chisq 340.8965
## Mismatched frequencies for '6:28470909' f[C,A] = [0.9743921,0.02560796] vs [0.9963,0.0037], chisq 328.6798
## Mismatched frequencies for '6:28583392' f[A,G] = [0.8693644,0.1306356] vs [0.971,0.029], chisq 1151.153
## Mismatched frequencies for '6:29067772' f[C,T] = [0.9199852,0.08001475] vs [0.9786,0.0214], chisq 552.4725
## Mismatched frequencies for '6:29735556' f[T,C] = [0.9513633,0.0486367] vs [0.9999,1e-04], chisq 1564.671
## Mismatched frequencies for '6:29912342' f[G,A] = [0.9607156,0.0392844] vs [0.9981,0.0019], chisq 902.2664
## Mismatched frequencies for '6:29917328' f[C,T] = [0.9171892,0.08281077] vs [0.9959,0.0041], chisq 1902.901
## Mismatched frequencies for '6:29937971' f[T,C] = [0.9561012,0.04389881] vs [0.8658,0.1342], chisq 352.6814
## Mismatched frequencies for '6:30030689' f[C,A] = [0.905236,0.09476401] vs [0.972,0.028], chisq 573.1361
## Mismatched frequencies for '6:30030928' f[C,T] = [0.8736648,0.1263352] vs [0.9537,0.0463], chisq 547.4798
## Mismatched frequencies for '6:30383507' f[C,T] = [0.998329,0.001670999] vs [0.8313,0.1687], chisq 1039.976
## Mismatched frequencies for '6:31086617' f[C,T] = [0.2531319,0.7468681] vs [0.3792,0.6208], chisq 320.356
## Mismatched frequencies for '6:31097918' f[T,C] = [0.7793738,0.2206261] vs [0.8874,0.1126], chisq 486.1286
## Mismatched frequencies for '6:31215585' f[G,A] = [0.9758748,0.02412523] vs [0.9995,5e-04], chisq 670.9862
## Mismatched frequencies for '6:31264319' f[G,T] = [0.7760589,0.2239411] vs [0.8967,0.1033], chisq 638.4808
## Mismatched frequencies for '6:31265736' f[C,T] = [0.9467576,0.05324244] vs [0.9843,0.0157], chisq 317.6817
## Mismatched frequencies for '6:31304291' f[G,A] = [0.4257553,0.5742447] vs [0.5975,0.4025], chisq 560.6144
## Mismatched frequencies for '6:31321551' f[A,G] = [0.7633517,0.2366483] vs [0.8695,0.1305], chisq 421.0936
## Mismatched frequencies for '6:31351572' f[G,T] = [0.1782689,0.8217311] vs [0.2964,0.7036], chisq 322.3885
## Mismatched frequencies for '6:32006387' f[A,T] = [0.9456804,0.05431961] vs [0.9912,0.0088], chisq 636.7943
## Mismatched frequencies for '6:32575735' f[A,G] = [0.8539118,0.1460882] vs [0.9577,0.0423], chisq 925.6904
## Mismatched frequencies for '6:32576064' f[G,C] = [0.5966309,0.4033691] vs [0.7694,0.2306], chisq 727.2469
## Mismatched frequencies for '6:32588007' f[T,C] = [0.8589082,0.1410918] vs [0.9391,0.0609], chisq 445.0361
## Mismatched frequencies for '6:32590833' f[A,G] = [0.3484681,0.6515319] vs [0.2312,0.7688], chisq 342.4095
## Mismatched frequencies for '6:32594901' f[T,C] = [0.1177229,0.8822771] vs [0.2286,0.7714], chisq 341.3916
## Mismatched frequencies for '6:32595223' f[A,G] = [0.4633518,0.5366483] vs [0.6626,0.3374], chisq 795.9549
## Mismatched frequencies for '6:32603075' f[T,G] = [0.9583024,0.04169755] vs [0.9968,0.0032], chisq 796.4162
## Mismatched frequencies for '6:32608150' f[G,A] = [0.6871776,0.3128224] vs [0.8386,0.1614], chisq 712.9374
## Mismatched frequencies for '6:32608821' f[A,G] = [0.1510378,0.8489622] vs [0.3452,0.6548], chisq 804.9424
## Mismatched frequencies for '6:32609453' f[C,T] = [0.7172222,0.2827778] vs [0.8931,0.1069], chisq 1250.166
## Mismatched frequencies for '6:32629137' f[T,G] = [0.4165438,0.5834562] vs [0.5809,0.4191], chisq 509.2035
## Mismatched frequencies for '6:32637833' f[G,A] = [0.7662482,0.2337519] vs [0.9429,0.0571], chisq 1916.735
## Mismatched frequencies for '6:32653703' f[G,A] = [0.7086716,0.2913284] vs [0.8544,0.1456], chisq 710.9494
## Mismatched frequencies for '6:32782030' f[A,C] = [0.8278085,0.1721915] vs [0.9996,4e-04], chisq 5629.682
## Mismatched frequencies for '6:32853987' f[G,A] = [0.412675,0.587325] vs [0.6073,0.3927], chisq 722.8735
## Mismatched frequencies for '6:32857212' f[C,A] = [0.9256229,0.07437709] vs [0.9995,5e-04], chisq 2315.19
## Mismatched frequencies for '6:32900428' f[G,A] = [0.853407,0.146593] vs [0.9757,0.0243], chisq 1736.216
## Mismatched frequencies for '6:33039681' f[A,G] = [0.8222836,0.1777164] vs [0.987,0.013], chisq 3579.628
## Mismatched frequencies for '6:33048661' f[A,G] = [0.7891344,0.2108656] vs [0.8938,0.1062], chisq 478.4884
## Mismatched frequencies for '6:33053942' f[T,C] = [0.7408027,0.2591973] vs [0.8875,0.1125], chisq 859.651
## Mismatched frequencies for '6:35966437' f[G,T] = [0.8556299,0.1443701] vs [0.9991,9e-04], chisq 4558.73
## Mismatched frequencies for '6:39149102' f[T,C] = [0.8764272,0.1235727] vs [0.967,0.033], chisq 870.0472
## Mismatched frequencies for '6:46322634' f[A,G] = [0.9723451,0.02765487] vs [0.9988,0.0012], chisq 655.549
## Mismatched frequencies for '6:48574403' f[T,C] = [0.7200736,0.2799263] vs [0.8306,0.1694], chisq 376.5464
## Mismatched frequencies for '6:50877831' f[A,G] = [0.8630163,0.1369838] vs [0.999,0.001], chisq 4287.369
## Mismatched frequencies for '6:52419333' f[A,G] = [0.8972704,0.1027296] vs [0.9994,6e-04], chisq 3234.577
## Mismatched frequencies for '6:55255733' f[A,C] = [0.8668508,0.1331492] vs [0.9655,0.0345], chisq 978.4648
## Mismatched frequencies for '6:65502750' f[C,T] = [0.9546627,0.04533726] vs [0.9936,0.0064], chisq 595.7347
## Mismatched frequencies for '6:69578799' f[A,G] = [0.6272593,0.3727407] vs [0.7523,0.2477], chisq 372.4298
## Mismatched frequencies for '6:69578843' f[G,T] = [0.8750923,0.1249077] vs [0.9982,0.0018], chisq 3698.402
## Mismatched frequencies for '6:70513080' f[A,G] = [0.4725396,0.5274604] vs [0.6479,0.3521], chisq 608.5657
## Mismatched frequencies for '6:70834999' f[A,G] = [0.8289086,0.1710915] vs [0.9197,0.0803], chisq 452.8921
## Mismatched frequencies for '6:72261401' f[T,C] = [0.9821231,0.01787689] vs [0.9998,2e-04], chisq 533.3917
## Mismatched frequencies for '6:73952103' f[A,C] = [0.7274235,0.2725765] vs [0.8535,0.1465], chisq 537.5448
## Mismatched frequencies for '6:82454905' f[C,T] = [0.9045337,0.09546627] vs [0.9723,0.0277], chisq 592.9888
## Mismatched frequencies for '6:93488364' f[C,A] = [0.8327808,0.1672192] vs [0.9887,0.0113], chisq 3479.058
## Mismatched frequencies for '6:94328291' f[T,C] = [0.9170966,0.08290347] vs [0.9842,0.0158], chisq 845.5757
## Mismatched frequencies for '6:99309607' f[T,C] = [0.9392765,0.06072351] vs [0.9995,5e-04], chisq 1865.151
## Mismatched frequencies for '6:100051300' f[G,A] = [0.8701658,0.1298343] vs [0.9994,6e-04], chisq 4143.735
## Mismatched frequencies for '6:102341430' f[A,G] = [0.04790197,0.952098] vs [0.1375,0.8625], chisq 339.6496
## Mismatched frequencies for '6:108530903' f[A,G] = [0.8402138,0.1597862] vs [0.9985,0.0015], chisq 4939.872
## Mismatched frequencies for '6:111375881' f[T,C] = [0.539779,0.460221] vs [0.7138,0.2862], chisq 657.3026
## Mismatched frequencies for '6:118537247' f[T,G] = [0.06707317,0.9329268] vs [0.2014,0.7986], chisq 561.7197
## Mismatched frequencies for '6:119003934' f[G,A] = [0.7807891,0.2192109] vs [0.9749,0.0251], chisq 3496.244
## Mismatched frequencies for '6:121603631' f[C,T] = [0.9833457,0.01665433] vs [0.999,0.001], chisq 352.2439
## Mismatched frequencies for '6:121758512' f[C,T] = [0.4640619,0.5359381] vs [0.6317,0.3683], chisq 548.0316
## Mismatched frequencies for '6:133877690' f[G,A] = [0.7877671,0.2122329] vs [0.8915,0.1085], chisq 462.755
## Mismatched frequencies for '6:134789379' f[T,C] = [0.951107,0.04889299] vs [0.9996,4e-04], chisq 1499.724
## Mismatched frequencies for '6:136582549' f[G,A] = [0.9749355,0.0250645] vs [0.9992,8e-04], chisq 643.1533
## Mismatched frequencies for '6:137320603' f[A,G] = [0.558444,0.441556] vs [0.7517,0.2483], chisq 868.7346
## Mismatched frequencies for '6:144772824' f[T,G] = [0.8219026,0.1780973] vs [0.9964,0.0036], chisq 5097.838
## Mismatched frequencies for '6:146053374' f[C,T] = [0.808601,0.191399] vs [0.9871,0.0129], chisq 4003.959
## Mismatched frequencies for '6:149212756' f[A,G] = [0.8196086,0.1803914] vs [0.997,0.003], chisq 5300.909
## Mismatched frequencies for '6:151129553' f[A,G] = [0.8876758,0.1123242] vs [0.9845,0.0155], chisq 1526.345
## Mismatched frequencies for '6:158678118' f[A,C] = [0.7347923,0.2652077] vs [0.6088,0.3912], chisq 313.7755
## Mismatched frequencies for '6:159169121' f[C,T] = [0.4439941,0.5560059] vs [0.6412,0.3588], chisq 762.352
## Mismatched frequencies for '6:160720747' f[G,A] = [0.8894426,0.1105574] vs [0.9904,0.0096], chisq 2017.359
## Mismatched frequencies for '6:161097231' f[G,A] = [0.816507,0.183493] vs [0.991,0.009], chisq 4312.251
## Mismatched frequencies for '6:162601040' f[A,G] = [0.8278085,0.1721915] vs [0.9685,0.0315], chisq 1879.677
## Mismatched frequencies for '6:166673181' f[T,C] = [0.6775563,0.3224437] vs [0.8473,0.1527], chisq 918.5124
## Mismatched frequencies for '6:166698959' f[T,C] = [0.9508106,0.04918939] vs [0.9915,0.0085], chisq 545.2003
## Mismatched frequencies for '6:167687621' f[G,T] = [0.9758748,0.02412523] vs [0.9964,0.0036], chisq 301.6099
## Mismatched frequencies for '6:168707949' f[A,G] = [0.5890487,0.4109513] vs [0.7355,0.2645], chisq 488.702
## Mismatched frequencies for '7:665661' f[A,G] = [0.8997769,0.1002231] vs [0.9986,0.0014], chisq 2963.642
## Mismatched frequencies for '7:7299655' f[C,T] = [0.9552486,0.04475138] vs [0.997,0.003], chisq 911.0451
## Mismatched frequencies for '7:7771123' f[A,C] = [0.738817,0.261183] vs [0.8414,0.1586], chisq 340.6993
## Mismatched frequencies for '7:9067395' f[C,T] = [0.9911078,0.008892182] vs [0.8957,0.1043], chisq 510.8543
## Mismatched frequencies for '7:9110702' f[A,G] = [0.8173609,0.1826392] vs [0.9943,0.0057], chisq 4840.22
## Mismatched frequencies for '7:10179203' f[C,T] = [0.976059,0.02394107] vs [0.9973,0.0027], chisq 367.5697
## Mismatched frequencies for '7:13990566' f[C,A] = [0.9440147,0.05598527] vs [0.9951,0.0049], chisq 1005.855
## Mismatched frequencies for '7:18415108' f[C,A] = [0.930977,0.06902295] vs [0.9931,0.0069], chisq 1152.383
## Mismatched frequencies for '7:20505674' f[A,C] = [0.8898524,0.1101476] vs [0.9985,0.0015], chisq 3273.049
## Mismatched frequencies for '7:24349936' f[A,G] = [0.9460007,0.05399926] vs [0.9976,0.0024], chisq 1277.119
## Mismatched frequencies for '7:24783987' f[C,A] = [0.8683628,0.1316372] vs [0.98,0.02], chisq 1669.975
## Mismatched frequencies for '7:32251202' f[G,A] = [0.09569733,0.9043027] vs [0.01779997,0.9822], chisq 1000.017
## Mismatched frequencies for '7:34745063' f[A,G] = [0.9091581,0.09084195] vs [0.9997,3e-04], chisq 2911.864
## Mismatched frequencies for '7:37544142' f[C,A] = [0.927256,0.07274401] vs [0.9767,0.0233], chisq 386.0349
## Mismatched frequencies for '7:40664412' f[G,A] = [0.8012891,0.1987109] vs [0.9929,0.0071], chisq 5120.07
## Mismatched frequencies for '7:43111234' f[C,T] = [0.9992606,0.0007393715] vs [0.937,0.063], chisq 351.2318
## Mismatched frequencies for '7:47269931' f[G,T] = [0.9998143,0.0001857355] vs [0.9312,0.0688], chisq 391.3635
## Mismatched frequencies for '7:51176655' f[C,A] = [0.04569094,0.954309] vs [0.1349,0.8651], chisq 342.6026
## Mismatched frequencies for '7:62943425' f[C,T] = [0.9736454,0.02635459] vs [0.9994,6e-04], chisq 722.3242
## Mismatched frequencies for '7:63617827' f[A,G] = [0.9535398,0.04646018] vs [0.9995,5e-04], chisq 1396.803
## Mismatched frequencies for '7:67136479' f[T,G] = [0.1606485,0.8393515] vs [0.2735,0.7265], chisq 309.9039
## Mismatched frequencies for '7:70534686' f[C,A] = [0.1994102,0.8005897] vs [0.3777,0.6223], chisq 647.7489
## Mismatched frequencies for '7:81001525' f[A,G] = [0.9766028,0.0233972] vs [0.9994,6e-04], chisq 627.7443
## Mismatched frequencies for '7:85435415' f[A,C] = [0.839108,0.160892] vs [0.9182,0.0818], chisq 344.3676
## Mismatched frequencies for '7:85744649' f[G,A] = [0.8269443,0.1730557] vs [0.9447,0.0553], chisq 962.8538
## Mismatched frequencies for '7:92656019' f[T,C] = [0.8459838,0.1540162] vs [0.9869,0.0131], chisq 2870.164
## Mismatched frequencies for '7:95281362' f[T,C] = [0.9690608,0.03093923] vs [0.9979,0.0021], chisq 624.7529
## Mismatched frequencies for '7:100551626' f[T,C] = [0.9515475,0.04845247] vs [0.8652,0.1348], chisq 322.7214
## Mismatched frequencies for '7:101177950' f[A,G] = [0.8917373,0.1082626] vs [0.9907,0.0093], chisq 1986.127
## Mismatched frequencies for '7:105333886' f[G,A] = [0.9985218,0.001478197] vs [0.9216,0.0784], chisq 436.6038
## Mismatched frequencies for '7:105577453' f[G,A] = [0.945901,0.05409897] vs [0.9956,0.0044], chisq 1008.152
## Mismatched frequencies for '7:107711792' f[A,C] = [0.8932522,0.1067478] vs [0.9936,0.0064], chisq 2301.766
## Mismatched frequencies for '7:110946700' f[G,A] = [0.9277286,0.07227138] vs [0.9803,0.0197], chisq 485.0117
## Mismatched frequencies for '7:127778099' f[C,A] = [0.8270719,0.1729282] vs [0.9933,0.0067], chisq 4344.969
## Mismatched frequencies for '7:129209530' f[C,T] = [0.8050129,0.1949871] vs [0.9655,0.0345], chisq 2210.296
## Mismatched frequencies for '7:131864071' f[C,T] = [0.948803,0.05119705] vs [0.99,0.01], chisq 504.5161
## Mismatched frequencies for '7:133951012' f[T,C] = [0.967944,0.03205601] vs [0.9944,0.0056], chisq 349.9634
## Mismatched frequencies for '7:139355342' f[C,A] = [0.9974141,0.002585888] vs [0.9415,0.0585], chisq 302.5
## Mismatched frequencies for '7:139894581' f[A,G] = [0.8336404,0.1663596] vs [0.993,0.007], chisq 4081.676
## Mismatched frequencies for '7:141891406' f[A,C] = [0.9998153,0.0001847063] vs [0.831,0.169], chisq 1067.447
## Mismatched frequencies for '7:147355378' f[C,A] = [0.8401473,0.1598527] vs [0.9316,0.0684], chisq 519.7402
## Mismatched frequencies for '7:148925853' f[A,G] = [0.718276,0.281724] vs [0.9115,0.0885], chisq 1686.36
## Mismatched frequencies for '7:153107516' f[G,A] = [0.9509985,0.04900148] vs [0.9996,4e-04], chisq 1503.111
## Mismatched frequencies for '7:156134992' f[G,A] = [0.9314917,0.06850829] vs [0.9983,0.0017], chisq 1863.098
## Mismatched frequencies for '7:157115383' f[G,A] = [0.3601695,0.6398305] vs [0.5337,0.4663], chisq 560.3423
## Mismatched frequencies for '7:158203492' f[G,A] = [0.9666544,0.03334561] vs [0.9995,5e-04], chisq 969.0788
## Mismatched frequencies for '7:158403540' f[A,C] = [0.9029108,0.09708916] vs [0.9949,0.0051], chisq 2193.437
## Mismatched frequencies for '8:1297156' f[T,C] = [0.350295,0.649705] vs [0.5427,0.4573], chisq 688.8484
## Mismatched frequencies for '8:1780346' f[G,T] = [0.2016218,0.7983782] vs [0.347,0.653], chisq 447.0569
## Mismatched frequencies for '8:2082288' f[C,T] = [0.9303867,0.06961326] vs [0.9843,0.0157], chisq 591.1021
## Mismatched frequencies for '8:2082305' f[G,A] = [0.9306785,0.06932154] vs [0.9954,0.0046], chisq 1423.981
## Mismatched frequencies for '8:2687779' f[G,A] = [0.4311554,0.5688446] vs [0.5601,0.4399], chisq 310.9649
## Mismatched frequencies for '8:4160944' f[G,T] = [0.8453972,0.1546028] vs [0.9972,0.0028], chisq 4472.676
## Mismatched frequencies for '8:4815661' f[A,G] = [0.2180479,0.7819521] vs [0.124,0.876], chisq 347.014
## Mismatched frequencies for '8:6189112' f[C,A] = [0.8680914,0.1319086] vs [0.998,0.002], chisq 3888.867
## Mismatched frequencies for '8:7169740' f[C,A] = [0.9545958,0.04540421] vs [0.988,0.012], chisq 314.0945
## Mismatched frequencies for '8:9086998' f[C,A] = [0.8248525,0.1751475] vs [0.9349,0.0651], chisq 757.3851
## Mismatched frequencies for '8:9409590' f[T,C] = [0.8812155,0.1187845] vs [0.9981,0.0019], chisq 3473.28
## Mismatched frequencies for '8:13543221' f[C,A] = [0.6588647,0.3411353] vs [0.8177,0.1823], chisq 719.5736
## Mismatched frequencies for '8:17376152' f[G,A] = [0.8075507,0.1924494] vs [0.9363,0.0637], chisq 1022.757
## Mismatched frequencies for '8:17446906' f[A,G] = [0.9679204,0.03207964] vs [0.9978,0.0022], chisq 644.8225
## Mismatched frequencies for '8:17764202' f[A,G] = [0.9501845,0.0498155] vs [0.9999,1e-04], chisq 1603.441
## Mismatched frequencies for '8:19605574' f[T,C] = [0.9998156,0.0001844338] vs [0.856,0.144], chisq 888.2291
## Mismatched frequencies for '8:20576521' f[T,C] = [0.9252302,0.0747698] vs [0.9977,0.0023], chisq 1951.114
## Mismatched frequencies for '8:25478748' f[A,G] = [0.818014,0.181986] vs [0.9306,0.0694], chisq 752.7298
## Mismatched frequencies for '8:25952536' f[T,G] = [0.7800295,0.2199705] vs [0.9409,0.0591], chisq 1596.332
## Mismatched frequencies for '8:29262274' f[C,T] = [0.8950276,0.1049724] vs [0.9634,0.0366], chisq 491.538
## Mismatched frequencies for '8:34464707' f[G,A] = [0.9981419,0.001858045] vs [0.9205,0.0795], chisq 436.4043
## Mismatched frequencies for '8:37012403' f[G,T] = [0.8091886,0.1908114] vs [0.9846,0.0154], chisq 3673.165
## Mismatched frequencies for '8:40753590' f[A,C] = [0.9736648,0.02633517] vs [0.9986,0.0014], chisq 584.598
## Mismatched frequencies for '8:51983919' f[C,T] = [0.8601695,0.1398305] vs [0.9929,0.0071], chisq 3221.973
## Mismatched frequencies for '8:52540897' f[A,C] = [0.7836096,0.2163904] vs [0.9396,0.0604], chisq 1491.378
## Mismatched frequencies for '8:56351168' f[G,A] = [0.6612606,0.3387394] vs [0.7885,0.2115], chisq 425.3699
## Mismatched frequencies for '8:58412971' f[T,C] = [0.9797347,0.02026529] vs [0.9986,0.0014], chisq 405.155
## Mismatched frequencies for '8:58700462' f[G,A] = [0.7668881,0.2331118] vs [0.9112,0.0888], chisq 992.1926
## Mismatched frequencies for '8:59368930' f[T,C] = [0.8707344,0.1292656] vs [0.9568,0.0432], chisq 653.8998
## Mismatched frequencies for '8:62074566' f[G,A] = [0.4602063,0.5397937] vs [0.6323,0.3677], chisq 577.7089
## Mismatched frequencies for '8:67197504' f[G,A] = [0.9808471,0.01915285] vs [0.9995,5e-04], chisq 511.8253
## Mismatched frequencies for '8:68388790' f[T,C] = [0.9794748,0.02052515] vs [0.9991,9e-04], chisq 484.1014
## Mismatched frequencies for '8:69466947' f[A,C] = [0.8279926,0.1720074] vs [0.9912,0.0088], chisq 3978.346
## Mismatched frequencies for '8:70457336' f[C,T] = [0.8501478,0.1498522] vs [0.9835,0.0165], chisq 2405.872
## Mismatched frequencies for '8:71446664' f[G,A] = [0.9771555,0.02284451] vs [0.9998,2e-04], chisq 694.953
## Mismatched frequencies for '8:72603012' f[T,C] = [0.9414697,0.05853028] vs [0.9998,2e-04], chisq 1865.551
## Mismatched frequencies for '8:75157427' f[G,A] = [0.955617,0.04438306] vs [0.9971,0.0029], chisq 913.3248
## Mismatched frequencies for '8:78400845' f[C,T] = [0.7186004,0.2813996] vs [0.8816,0.1184], chisq 1015.947
## Mismatched frequencies for '8:84336053' f[C,T] = [0.8964628,0.1035372] vs [0.9809,0.0191], chisq 1097.161
## Mismatched frequencies for '8:93191508' f[A,G] = [0.947417,0.05258303] vs [0.9961,0.0039], chisq 1024.402
## Mismatched frequencies for '8:94252531' f[T,C] = [0.7526802,0.2473198] vs [0.9033,0.0967], chisq 1009.275
## Mismatched frequencies for '8:95160958' f[T,G] = [0.8511422,0.1488578] vs [0.9995,5e-04], chisq 4811.066
## Mismatched frequencies for '8:96471296' f[C,A] = [0.9695733,0.03042672] vs [0.9986,0.0014], chisq 707.912
## Mismatched frequencies for '8:100827317' f[G,A] = [0.8241048,0.1758952] vs [0.9996,4e-04], chisq 5755.674
## Mismatched frequencies for '8:106869225' f[G,T] = [0.9243094,0.0756906] vs [0.9862,0.0138], chisq 804.3637
## Mismatched frequencies for '8:107315480' f[T,C] = [0.8421247,0.1578753] vs [0.9977,0.0023], chisq 4693.777
## Mismatched frequencies for '8:114733915' f[T,C] = [0.7811348,0.2188651] vs [0.9646,0.0354], chisq 2704.811
## Mismatched frequencies for '8:115526940' f[T,G] = [0.7062293,0.2937707] vs [0.844,0.156], chisq 609.2206
## Mismatched frequencies for '8:116352258' f[A,C] = [0.9293639,0.07063609] vs [0.9897,0.0103], chisq 909.4651
## Mismatched frequencies for '8:120188522' f[T,G] = [0.4880251,0.5119749] vs [0.6716,0.3284], chisq 684.7212
## Mismatched frequencies for '8:121876077' f[A,G] = [0.8775888,0.1224112] vs [0.9534,0.0466], chisq 492.255
## Mismatched frequencies for '8:124862560' f[A,G] = [0.7776549,0.2223451] vs [0.8862,0.1138], chisq 486.273
## Mismatched frequencies for '8:126874215' f[T,G] = [0.5900369,0.4099631] vs [0.7807,0.2193], chisq 908.8724
## Mismatched frequencies for '8:127769885' f[T,C] = [0.9069982,0.09300184] vs [0.968,0.032], chisq 442.9687
## Mismatched frequencies for '8:128280955' f[C,A] = [0.9458364,0.0541636] vs [0.9881,0.0119], chisq 471.1541
## Mismatched frequencies for '8:129028037' f[G,A] = [0.1816507,0.8183493] vs [0.3232,0.6768], chisq 441.2711
## Mismatched frequencies for '8:130758049' f[T,C] = [0.8697897,0.1302102] vs [0.9986,0.0014], chisq 3965.859
## Mismatched frequencies for '8:135899288' f[A,G] = [0.7893186,0.2106814] vs [0.9726,0.0274], chisq 3077.436
## Mismatched frequencies for '8:138226395' f[A,G] = [0.9340457,0.06595431] vs [0.9978,0.0022], chisq 1687.307
## Mismatched frequencies for '9:727680' f[A,G] = [0.9882093,0.01179072] vs [0.9997,3e-04], chisq 316.1936
## Mismatched frequencies for '9:1310551' f[T,C] = [0.4042357,0.5957643] vs [0.5754,0.4246], chisq 550.8701
## Mismatched frequencies for '9:4228216' f[A,G] = [0.9077491,0.09225092] vs [0.9991,9e-04], chisq 2814.346
## Mismatched frequencies for '9:7060454' f[G,A] = [0.4830508,0.5169492] vs [0.6252,0.3748], chisq 393.1707
## Mismatched frequencies for '9:8470269' f[C,T] = [0.9996281,0.0003718855] vs [0.9387,0.0613], chisq 343.4359
## Mismatched frequencies for '9:8710098' f[G,A] = [0.9972171,0.002782931] vs [0.8809,0.1191], chisq 679.6223
## Mismatched frequencies for '9:10261096' f[T,G] = [0.5549613,0.4450387] vs [0.7418,0.2582], chisq 796.0437
## Mismatched frequencies for '9:11704531' f[G,A] = [0.6445672,0.3554328] vs [0.774,0.226], chisq 421.857
## Mismatched frequencies for '9:18674221' f[A,C] = [0.2519365,0.7480634] vs [0.4085,0.5915], chisq 480.4839
## Mismatched frequencies for '9:20256941' f[C,A] = [0.8262712,0.1737288] vs [0.9843,0.0157], chisq 3150.437
## Mismatched frequencies for '9:34833050' f[C,A] = [0.8708781,0.1291219] vs [0.9997,3e-04], chisq 4193.882
## Mismatched frequencies for '9:34935734' f[G,T] = [0.1196093,0.8803907] vs [0.2279,0.7721], chisq 325.9109
## Mismatched frequencies for '9:36727911' f[C,T] = [0.5883764,0.4116236] vs [0.7555,0.2445], chisq 660.6478
## Mismatched frequencies for '9:71081188' f[T,G] = [0.9193073,0.0806927] vs [0.9873,0.0127], chisq 980.156
## Mismatched frequencies for '9:73049097' f[T,G] = [0.6979705,0.3020295] vs [0.8349,0.1651], chisq 578.3493
## Mismatched frequencies for '9:76910137' f[A,T] = [0.9701328,0.02986726] vs [0.995,0.005], chisq 338.6703
## Mismatched frequencies for '9:79467863' f[T,C] = [0.9994426,0.0005574136] vs [0.94,0.06], chisq 333.6601
## Mismatched frequencies for '9:84221717' f[T,G] = [0.02837141,0.9716286] vs [0.1467,0.8533], chisq 576.6704
## Mismatched frequencies for '9:88186919' f[G,T] = [0.8343773,0.1656227] vs [0.9991,9e-04], chisq 5281.365
## Mismatched frequencies for '9:88778061' f[C,A] = [0.9250278,0.07497223] vs [0.9989,0.0011], chisq 2197.47
## Mismatched frequencies for '9:91090999' f[G,T] = [0.8712233,0.1287767] vs [0.9936,0.0064], chisq 2982.101
## Mismatched frequencies for '9:92338890' f[C,T] = [0.4200737,0.5799263] vs [0.6146,0.3854], chisq 725.9848
## Mismatched frequencies for '9:96135539' f[C,T] = [0.03316139,0.9668386] vs [0.1126,0.8874], chisq 322.5826
## Mismatched frequencies for '9:97396586' f[A,G] = [0.8951732,0.1048268] vs [0.999,0.001], chisq 3209.779
## Mismatched frequencies for '9:101102479' f[T,G] = [0.8800221,0.1199779] vs [0.9856,0.0144], chisq 1809.079
## Mismatched frequencies for '9:104230309' f[T,G] = [0.9052807,0.09471935] vs [0.9994,6e-04], chisq 2967.298
## Mismatched frequencies for '9:106459830' f[C,T] = [0.832535,0.167465] vs [0.9952,0.0048], chisq 4506.06
## Mismatched frequencies for '9:108758634' f[G,A] = [0.8145488,0.1854512] vs [0.9982,0.0018], chisq 5742.778
## Mismatched frequencies for '9:113117183' f[C,A] = [0.6895726,0.3104274] vs [0.829,0.171], chisq 585.1576
## Mismatched frequencies for '9:113190709' f[C,A] = [0.6269344,0.3730656] vs [0.7859,0.2141], chisq 650.1385
## Mismatched frequencies for '9:123919040' f[C,A] = [0.1462648,0.8537352] vs [0.2794,0.7206], chisq 426.6667
## Mismatched frequencies for '9:126765233' f[T,C] = [0.938283,0.06171702] vs [0.9913,0.0087], chisq 815.5639
## Mismatched frequencies for '9:131411093' f[G,A] = [0.9428466,0.05715339] vs [0.9964,0.0036], chisq 1196.68
## Mismatched frequencies for '9:133000017' f[G,A] = [0.5256079,0.474392] vs [0.6576,0.3424], chisq 351.1025
## Mismatched frequencies for '9:133603151' f[A,C] = [0.7843969,0.2156031] vs [0.9679,0.0321], chisq 2847.066
## Mismatched frequencies for '9:137194349' f[G,T] = [0.8611418,0.1388582] vs [0.9986,0.0014], chisq 4256.834
## Mismatched frequencies for '9:138139087' f[G,T] = [0.8374493,0.1625507] vs [0.9197,0.0803], chisq 376.2258
## Mismatched frequencies for '9:138305834' f[T,G] = [0.8305022,0.1694978] vs [0.9971,0.0029], chisq 4954.609