Last updated: 2020-02-09
Checks: 5 2
Knit directory: PSYMETAB/
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| /data/sgg2/jenny/projects/PSYMETAB | . |
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Ignored: analysis/._data_processing_in_genomestudio.Rmd
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Ignored: analysis/QC/
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Ignored: pre_impute_qc_1_clustermq.out
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Untracked: analysis/plans.Rmd
Untracked: download_impute.log
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outdated(qc_prep)character(0)deps_profile(fam_munge, qc_prep)# A tibble: 5 x 4
name changed old new
<chr> <lgl> <chr> <chr>
1 command FALSE "10272f045cceef79" "10272f045cceef79"
2 depend FALSE "6f42c78ff74035a6" "6f42c78ff74035a6"
3 file_in FALSE "" ""
4 file_out FALSE "" ""
5 seed FALSE "722845642" "722845642" deps_code(munge_fam)# A tibble: 4 x 2
name type
<chr> <chr>
1 return globals
2 merge globals
3 c globals
4 colnames<- globalsdeps_target(fam_munge, qc_prep)# A tibble: 3 x 3
name type hash
<chr> <chr> <chr>
1 munge_fam globals 45d8a46ac51139fe
2 fam_raw globals b43e1377f18cf415
3 id_code globals a243fab17081d08fvis_drake_graph(qc_prep)vis_drake_graph(pre_impute_qc)vis_drake_graph(download_impute)vis_drake_graph(post_impute)vis_drake_graph(analysis)#vis_drake_graph(download_impute, make_imports = FALSE)
#vis_drake_graph(post_impute, make_imports = FALSE)
options(scipen=999)
sessionInfo()R version 3.5.3 (2019-03-11)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /data/sgg2/jenny/bin/R-3.5.3/lib64/R/lib/libRblas.so
LAPACK: /data/sgg2/jenny/bin/R-3.5.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] tidyselect_0.2.5 kableExtra_1.1.0 R.utils_2.9.2
[4] R.oo_1.23.0 R.methodsS3_1.7.1 TwoSampleMR_0.4.25
[7] reader_1.0.6 NCmisc_1.1.6 optparse_1.6.4
[10] readxl_1.3.1 ggthemes_4.2.0 tryCatchLog_1.1.6
[13] futile.logger_1.4.3 DataExplorer_0.8.0 taRifx_1.0.6.1
[16] qqman_0.1.4 MASS_7.3-51.5 bit64_0.9-7
[19] bit_1.1-14 rslurm_0.5.0 rmeta_3.0
[22] devtools_2.2.1 usethis_1.5.1 data.table_1.12.8
[25] clustermq_0.8.8.1 future.batchtools_0.8.1 future_1.15.1
[28] rlang_0.4.2 knitr_1.26 drake_7.9.0.9000
[31] forcats_0.4.0 stringr_1.4.0 dplyr_0.8.3
[34] purrr_0.3.3 readr_1.3.1 tidyr_1.0.0
[37] tibble_2.1.3 ggplot2_3.2.1 tidyverse_1.3.0
[40] pacman_0.5.1 processx_3.4.1 workflowr_1.6.0
loaded via a namespace (and not attached):
[1] backports_1.1.5 plyr_1.8.5 igraph_1.2.4.2
[4] lazyeval_0.2.2 storr_1.2.1 listenv_0.8.0
[7] digest_0.6.23 htmltools_0.4.0 fansi_0.4.1
[10] magrittr_1.5 checkmate_1.9.4 memoise_1.1.0
[13] base64url_1.4 remotes_2.1.0 globals_0.12.5
[16] modelr_0.1.5 prettyunits_1.1.0 colorspace_1.4-1
[19] rvest_0.3.5 rappdirs_0.3.1 haven_2.2.0
[22] xfun_0.11 callr_3.4.0 crayon_1.3.4
[25] jsonlite_1.6 zeallot_0.1.0 brew_1.0-6
[28] glue_1.3.1 gtable_0.3.0 webshot_0.5.2
[31] pkgbuild_1.0.6 scales_1.1.0 futile.options_1.0.1
[34] DBI_1.1.0 Rcpp_1.0.3 viridisLite_0.3.0
[37] progress_1.2.2 txtq_0.2.0 htmlwidgets_1.5.1
[40] httr_1.4.1 getopt_1.20.3 calibrate_1.7.5
[43] ellipsis_0.3.0 pkgconfig_2.0.3 dbplyr_1.4.2
[46] utf8_1.1.4 reshape2_1.4.3 later_1.0.0
[49] visNetwork_2.0.9 munsell_0.5.0 cellranger_1.1.0
[52] tools_3.5.3 cli_2.0.1 generics_0.0.2
[55] broom_0.5.3 evaluate_0.14 yaml_2.2.0
[58] fs_1.3.1 packrat_0.5.0 nlme_3.1-143
[61] formatR_1.7 proftools_0.99-2 xml2_1.2.2
[64] compiler_3.5.3 rstudioapi_0.10 filelock_1.0.2
[67] testthat_2.3.1 reprex_0.3.0 stringi_1.4.5
[70] highr_0.8 ps_1.3.0 desc_1.2.0
[73] lattice_0.20-38 vctrs_0.2.1 pillar_1.4.3
[76] lifecycle_0.1.0 networkD3_0.4 httpuv_1.5.2
[79] R6_2.4.1 promises_1.1.0 gridExtra_2.3
[82] sessioninfo_1.1.1 codetools_0.2-16 lambda.r_1.2.4
[85] assertthat_0.2.1 pkgload_1.0.2 rprojroot_1.3-2
[88] withr_2.1.2 batchtools_0.9.12 parallel_3.5.3
[91] hms_0.5.3 grid_3.5.3 rmarkdown_1.18
[94] git2r_0.26.1 lubridate_1.7.4