Last updated: 2020-05-25

Checks: 2 0

Knit directory: analysis_pipelines/

This reproducible R Markdown analysis was created with workflowr (version 1.6.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Untracked files:
    Untracked:  analysis/TWAS.Rmd
    Untracked:  analysis/make_ldsc_binary_annot.R
    Untracked:  analysis/make_ldsc_continuous_annot.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
Rmd 4be4f67 kevinlkx 2020-05-25 wflow_publish(“analysis/GWAS_sumstats.Rmd”)
html d5cee1f kevinlkx 2020-05-24 Build site.
html 5a00125 kevinlkx 2020-05-24 Build site.
Rmd c4cd35c kevinlkx 2020-05-24 wflow_publish(“analysis/GWAS_sumstats.Rmd”)
html 83ec764 kevinlkx 2020-05-24 Build site.
html 5641158 kevinlkx 2020-05-24 Build site.
Rmd c9c19d4 kevinlkx 2020-05-24 wflow_publish(“analysis/GWAS_sumstats.Rmd”)
html 777c38c kevinlkx 2020-05-24 Build site.
Rmd c721074 kevinlkx 2020-05-24 wflow_publish(“analysis/GWAS_sumstats.Rmd”)
html 8f14331 kevinlkx 2020-05-24 Build site.
Rmd d861aa6 kevinlkx 2020-05-24 wflow_publish(“analysis/GWAS_sumstats.Rmd”)

GWAS summary stats

LDSC format

GWAS summary statistics in .sumstats format on RCC