Last updated: 2022-03-01

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Mouse ChIP-seq data from ENCODE

Unfiltered aligned reads downloaded from https://www.encodeproject.org/search/?type=Experiment&control_type!=*&status=released&perturbed=false&searchTerm=mouse+chipseq&target.label=H3K4me3&target.label=H3K27ac&biosample_ontology.term_name=embryonic+facial+prominence

Table. ENCODE mouse embryonic facial prominence ChIP-seq accession numbers and details used in study.


replicate		 antibody stage accession input control file type seq reads strain background biosample ID biosample description lab/references
1 H3K27ac E10.5 ENCFF213EBC ENCFF157KEH unfiltered BAM SE50nt C57BL/6 ENCBS938XWJ Embryonic facial prominence
from 69 mice		 Bing Ren, UCSD
2 H3K27ac E10.5 ENCFF548BRR ENCFF825AVI unfiltered BAM SE50nt C57BL/6 ENCBS199YOQ Embryonic facial prominence
from 51 mice		 Bing Ren, UCSD
1 H3K27ac E11.5 ENCFF512SFE ENCFF184CUE unfiltered BAM SE36nt C57BL/6 ENCBS141GPQ Embryonic facial prominence
from 109 mice		 Bing Ren, UCSD
2 H3K27ac E11.5 ENCFF515PKL ENCFF376FGM unfiltered BAM SE36nt C57BL/6 ENCBS468NAL Embryonic facial prominence
from 88 mice		 Bing Ren, UCSD
1 H3K27ac E12.5 ENCFF394TZN ENCFF203JQV unfiltered BAM SE50nt C57BL/6 ENCBS047UII Embryonic facial prominence
from 120 mice		 Bing Ren, UCSD
2 H3K27ac E12.5 ENCFF011NFM ENCFF058AUT unfiltered BAM SE50nt C57BL/6 ENCBS399GYO Embryonic facial prominence
from 88 mice		 Bing Ren, UCSD
1 H3K27ac E13.5 ENCFF194ORC ENCFF117QRC unfiltered BAM SE50nt C57BL/6 ENCBS764ZZN Embryonic facial prominence
from 62 mice		 Bing Ren, UCSD
2 H3K27ac E13.5 ENCFF290ZNF ENCFF248PGK unfiltered BAM SE50nt C57BL/6 ENCBS847MIW Embryonic facial prominence
from 66 mice		 Bing Ren, UCSD
1 H3K27ac E14.5 ENCFF327VAO ENCFF784ORI unfiltered BAM SE36nt C57BL/6 ENCBS012AAA Embryonic facial prominence
from 24 mice		 Bing Ren, UCSD
2 H3K27ac E14.5 ENCFF902HAR ENCFF002HZV unfiltered BAM SE36nt C57BL/6 ENCBS012AAA Embryonic facial prominence
from 24 mice		 Bing Ren, UCSD
1 H3K27ac E15.5 ENCFF584JFB ENCFF727QTS unfiltered BAM SE50nt C57BL/6 ENCBS543BPM Embryonic facial prominence
from 78 mice		 Bing Ren, UCSD
2 H3K27ac E15.5 ENCFF707WKL ENCFF182XFG unfiltered BAM SE50nt C57BL/6 ENCBS900XQR Embryonic facial prominence
from 62 mice		 Bing Ren, UCSD
1 H3K4me3 E10.5 ENCFF124UYX ENCFF157KEH unfiltered BAM SE50nt C57BL/6 ENCBS938XWJ Embryonic facial prominence
from 69 mice		 Bing Ren, UCSD
2 H3K4me3 E10.5 ENCFF045IPK ENCFF825AVI unfiltered BAM SE50nt C57BL/6 ENCBS199YOQ Embryonic facial prominence
from 51 mice		 Bing Ren, UCSD
1 H3K4me3 E11.5 ENCFF760QYZ ENCFF184CUE unfiltered BAM SE36nt C57BL/6 ENCBS141GPQ Embryonic facial prominence
from 109 mice		 Bing Ren, UCSD
2 H3K4me3 E11.5 ENCFF717QDV ENCFF376FGM unfiltered BAM SE36nt C57BL/6 ENCBS468NAL Embryonic facial prominence
from 88 mice		 Bing Ren, UCSD
1 H3K4me3 E12.5 ENCFF182ZPF ENCFF203JQV unfiltered BAM SE50nt C57BL/6 ENCBS047UII Embryonic facial prominence
from 120 mice		 Bing Ren, UCSD
2 H3K4me3 E12.5 ENCFF941QJZ ENCFF058AUT unfiltered BAM SE50nt C57BL/6 ENCBS399GYO Embryonic facial prominence
from 88 mice		 Bing Ren, UCSD
1 H3K4me3 E13.5 ENCFF485UDC ENCFF117QRC unfiltered BAM SE50nt C57BL/6 ENCBS764ZZN Embryonic facial prominence
from 62 mice		 Bing Ren, UCSD
2 H3K4me3 E13.5 ENCFF124TAB ENCFF248PGK unfiltered BAM SE50nt C57BL/6 ENCBS847MIW Embryonic facial prominence
from 66 mice		 Bing Ren, UCSD
1 H3K4me3 E14.5 ENCFF724DMU ENCFF784ORI unfiltered BAM SE36nt C57BL/6 ENCBS012AAA Embryonic facial prominence
from 24 mice		 Bing Ren, UCSD
2 H3K4me3 E14.5 ENCFF665QBJ ENCFF002HZV unfiltered BAM SE36nt C57BL/6 ENCBS024AAA Embryonic facial prominence
from 34 mice		 Bing Ren, UCSD
1 H3K4me3 E15.5 ENCFF258KCR ENCFF727QTS unfiltered BAM SE50nt C57BL/6 ENCBS543BPM Embryonic facial prominence
from 78 mice		 Bing Ren, UCSD
2 H3K4me3 E15.5 ENCFF401BKM ENCFF182XFG unfiltered BAM SE50nt C57BL/6 ENCBS900XQR Embryonic facial prominence
from 62 mice		 Bing Ren, UCSD