Last updated: 2019-06-15
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Knit directory: 2019-feature-selection/
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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | a036319 | pat-s | 2019-06-15 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| rows | columns | discrete_columns | continuous_columns | all_missing_columns | total_missing_values | complete_rows | total_observations | memory_usage |
|---|---|---|---|---|---|---|---|---|
| 1759 | 90 | 0 | 90 | 0 | 0 | 1759 | 158310 | 1285080 |
| rows | columns | discrete_columns | continuous_columns | all_missing_columns | total_missing_values | complete_rows | total_observations | memory_usage |
|---|---|---|---|---|---|---|---|---|
| 1759 | 7382 | 0 | 7382 | 0 | 0 | 1759 | 12984938 | 105368104 |
No histograms for NRI -> too many features.
| rows | columns | discrete_columns | continuous_columns | all_missing_columns | total_missing_values | complete_rows | total_observations | memory_usage |
|---|---|---|---|---|---|---|---|---|
| 1759 | 123 | 0 | 123 | 0 | 0 | 1759 | 216357 | 1754904 |
# A tibble: 4 x 2
plot `mean(defoliation)`
<fct> <dbl>
1 Laukiz 1 56.0
2 Laukiz 2 13.5
3 Luiando 68.4
4 Oiartzun 69.2# A tibble: 4 x 2
plot `(sd(defoliation)/mean(defoliation)) * 100`
<fct> <dbl>
1 Laukiz 1 35.4
2 Laukiz 2 125.
3 Luiando 12.1
4 Oiartzun 19.9# A tibble: 4 x 2
plot `((sd(defoliation)/mean(defoliation)) * 100)/e1071::skewness(de~
<fct> <dbl>
1 Laukiz 1 -50.6
2 Laukiz 2 55.0
3 Luiando -3.13
4 Oiartzun -21.3 # A tibble: 4 x 2
plot `sd(defoliation)`
<fct> <dbl>
1 Laukiz 1 19.8
2 Laukiz 2 16.9
3 Luiando 8.28
4 Oiartzun 13.8 Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
In Meters.
$`Laukiz 1`
[1] 34.64678
$`Laukiz 2`
[1] 61.58605
$Luiando
[1] 33.14163
$Oiartzun
[1] 34.96409
R version 3.5.2 (2018-12-20)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /opt/spack/opt/spack/linux-centos7-x86_64/gcc-7.3.0/openblas-0.3.5-zncvk4jccaqyfl4z3vszaboeps6hyzta/lib/libopenblas_zen-r0.3.5.so
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggsci_2.9 DataExplorer_0.8.0 tidyselect_0.2.5
[4] mRMRe_2.0.9 igraph_1.2.4 survival_2.43-3
[7] praznik_5.0.0 workflowr_1.4.0 here_0.1
[10] ggpubr_0.1.6 ggspatial_1.0.3 gdalUtils_2.0.1.7
[13] getSpatialData_0.0.4 knitr_1.23 rgenoud_5.8-3.0
[16] parallelMap_1.3 mlrMBO_1.1.2 smoof_1.5.1
[19] checkmate_1.9.1 BBmisc_1.11 mapview_2.3.0
[22] stringr_1.4.0 fs_1.2.6 curl_3.3
[25] mlrCPO_0.3.4-2 mlr_2.14.0.9000 ParamHelpers_1.12
[28] data.table_1.12.0 magrittr_1.5 future.apply_1.1.0
[31] future.callr_0.4.0 furrr_0.1.0.9002 future_1.11.1.1
[34] R.utils_2.8.0 R.oo_1.22.0 R.methodsS3_1.7.1
[37] glue_1.3.0 purrr_0.3.0 sf_0.7-3
[40] dplyr_0.8.0.1 hsdar_0.5.2 caret_6.0-81
[43] ggplot2_3.1.0 lattice_0.20-38 signal_0.7-6
[46] rootSolve_1.7 rgdal_1.4-3 raster_2.8-19
[49] sp_1.3-1 drake_7.4.0
loaded via a namespace (and not attached):
[1] backports_1.1.3 fastmatch_1.1-0 mapedit_0.4.3
[4] plyr_1.8.4 lazyeval_0.2.1 splines_3.5.2
[7] storr_1.2.1 crosstalk_1.0.0 listenv_0.7.0
[10] leaflet_2.0.2 usethis_1.4.0 digest_0.6.18
[13] foreach_1.4.4 htmltools_0.3.6 fansi_0.4.0
[16] memoise_1.1.0 base64url_1.4 remotes_2.0.2
[19] recipes_0.1.4 globals_0.12.4 gower_0.1.2
[22] prettyunits_1.0.2 colorspace_1.4-0 xfun_0.5
[25] callr_3.1.1 crayon_1.3.4 jsonlite_1.6
[28] iterators_1.0.10 gtable_0.2.0 ipred_0.9-8
[31] webshot_0.5.1 pkgbuild_1.0.2 scales_1.0.0
[34] DBI_1.0.0 Rcpp_1.0.0 viridisLite_0.3.0
[37] xtable_1.8-3 units_0.6-2 stats4_3.5.2
[40] lava_1.6.5 prodlim_2018.04.18 htmlwidgets_1.3
[43] httr_1.4.0 RColorBrewer_1.1-2 pkgconfig_2.0.2
[46] nnet_7.3-12 utf8_1.1.4 RJSONIO_1.3-1.1
[49] labeling_0.3 rlang_0.3.4 reshape2_1.4.3
[52] later_0.8.0 munsell_0.5.0 tools_3.5.2
[55] cli_1.1.0 generics_0.0.2 devtools_2.0.1
[58] evaluate_0.13 yaml_2.2.0 ModelMetrics_1.2.2
[61] processx_3.2.1 satellite_1.0.1 nlme_3.1-137
[64] whisker_0.3-2 mime_0.6 xml2_1.2.0
[67] compiler_3.5.2 plotly_4.8.0 png_0.1-7
[70] e1071_1.7-0.1 testthat_2.0.1 RPostgreSQL_0.6-2
[73] tibble_2.0.1 lhs_1.0.1 stringi_1.3.1
[76] highr_0.7 ps_1.3.0 desc_1.2.0
[79] plot3D_1.1.1 Matrix_1.2-15 classInt_0.3-1
[82] networkD3_0.4 pillar_1.3.1 httpuv_1.4.5.1
[85] R6_2.4.0 promises_1.0.1 gridExtra_2.3
[88] sessioninfo_1.1.1 codetools_0.2-16 MASS_7.3-51.1
[91] assertthat_0.2.0 pkgload_1.0.2 rprojroot_1.3-2
[94] withr_2.1.2 parallel_3.5.2 grid_3.5.2
[97] rpart_4.1-13 timeDate_3043.102 tidyr_0.8.2
[100] class_7.3-15 rmarkdown_1.13 misc3d_0.8-4
[103] mco_1.0-15.1 git2r_0.24.0 getPass_0.2-2
[106] shiny_1.2.0 lubridate_1.7.4 base64enc_0.1-3