Last updated: 2022-03-15
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Knit directory: cogstruct/analysis/
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tar_load(indices_clean)
tests_included <- deframe(distinct(indices_clean, game_name_abbr, game_name))
render_content <- function(file, ...) {
knitr::knit(
text = knitr::knit_expand(file, ...),
quiet = TRUE
)
}
purrr::imap_chr(
tests_included,
~ render_content(
file = here::here("archetypes/child_check_index.Rmd"),
game_name_abbr = .x,
game_name = .y
)
) |>
str_c(collapse = "\n\n") |>
cat()
data <- indices_clean |>
filter(
game_name_abbr == "CRTPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "TOVAS",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "WxPred",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "NsymNCmp",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Digit3back",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Grid2back",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Paint2back",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Verbal3back",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Nback3",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "StopSigPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "ColStrpPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "CardSortPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "BirdsPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "JLO",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "HOP",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "MOTPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "AttSrc",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "SSTMPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "LocMemStd",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "FWSPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "AscLanMd",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "LdnTwr",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "FPTPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "SCSpan",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "KeepTrack",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "SRTPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "DualTaskPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "ConRec",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "BPS",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "DRM",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "ProbRL",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Seman",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Tone",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "FlkrPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "FacesPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "FDSPro",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "NVR",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "DR",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "VR",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "MR3D",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "DD",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "TOJ",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "RP",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "CalcSpdMed",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "Dual2back",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "AntiSac",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "SchulteMed",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "AscMem",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "NLEMed",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "CalcMed",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "FR",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "RAT",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "OCSpan",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "RSpan",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "DirectSrc",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
data <- indices_clean |>
filter(
game_name_abbr == "MSynWin",
if_all(contains("test"), ~ !is.infinite(.x)),
!(is.na(test) & is.na(retest))
) |>
group_by(index_name) |>
mutate(
across(
contains("test"),
list(
is_outlier = ~ .x %in% boxplot.stats(.x)$out
)
)
) |>
ungroup() |>
mutate(
is_outlier = test_is_outlier | retest_is_outlier,
.keep = "unused"
)
n_indices <- n_distinct(data$index_name)
data |>
pivot_wider(
id_cols = user_id,
names_from = index_name,
values_from = test
) |>
select(-user_id) |>
GGally::ggpairs()
data_test_retest <- drop_na(data)
reliability <- data_test_retest |>
group_by(index_name) |>
group_modify(
~ tibble(
n = nrow(.x),
n_no_outlier = .x |>
filter(!is_outlier) |>
nrow(),
icc = .x |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
icc_no_outlier = .x |>
filter(!is_outlier) |>
select(contains("test")) |>
psych::ICC() |>
pluck("results", "ICC", 2),
r = cor(.x$test, .x$retest),
r_no_outlier = .x |>
filter(!is_outlier) |>
summarise(r = cor(test, retest)) |>
pull(r)
)
) |>
ungroup()
data_test_retest |>
ggpubr::ggscatter("test", "retest", color = "is_outlier") +
geom_text(
data = reliability,
aes(
x = -Inf, y = Inf,
label = str_glue(
"N = {n} ({n_no_outlier})\n",
"r = {round(r, 2)} ({round(r_no_outlier, 2)})\n",
"icc = {round(icc, 2)} ({round(icc_no_outlier, 2)})"
)
),
hjust = -0.1, vjust = 1.1
) +
scale_color_grey() +
facet_wrap(~ index_name, ncol = 1, scales = "free") +
theme(aspect.ratio = 1) +
labs(
color = "Outlier",
caption = "Values in brackets are those without outliers."
)
sessionInfo()
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.4 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] targets_0.10.0 forcats_0.5.1 stringr_1.4.0 dplyr_1.0.8
[5] purrr_0.3.4 readr_2.1.2 tidyr_1.2.0 tibble_3.1.6
[9] ggplot2_3.3.5 tidyverse_1.3.1 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] minqa_1.2.4 colorspace_2.0-3 ggsignif_0.6.3
[4] ellipsis_0.3.2 rprojroot_2.0.2 fs_1.5.2
[7] rstudioapi_0.13 ggpubr_0.4.0 farver_2.1.0
[10] fansi_1.0.2 lubridate_1.8.0 xml2_1.3.3
[13] codetools_0.2-18 splines_4.1.2 mnormt_2.0.2
[16] knitr_1.37 jsonlite_1.8.0 nloptr_2.0.0
[19] broom_0.7.12 dbplyr_2.1.1 compiler_4.1.2
[22] httr_1.4.2 backports_1.4.1 assertthat_0.2.1
[25] Matrix_1.4-0 fastmap_1.1.0 cli_3.2.0
[28] later_1.3.0 htmltools_0.5.2 tools_4.1.2
[31] igraph_1.2.11 gtable_0.3.0 glue_1.6.2
[34] Rcpp_1.0.8 carData_3.0-5 cellranger_1.1.0
[37] jquerylib_0.1.4 vctrs_0.3.8 nlme_3.1-155
[40] psych_2.1.9 xfun_0.30 ps_1.6.0
[43] lme4_1.1-28 rvest_1.0.2 lifecycle_1.0.1
[46] rstatix_0.7.0 getPass_0.2-2 MASS_7.3-55
[49] scales_1.1.1 hms_1.1.1 promises_1.2.0.1
[52] parallel_4.1.2 RColorBrewer_1.1-2 qs_0.25.3
[55] yaml_2.3.5 sass_0.4.0 reshape_0.8.8
[58] stringi_1.7.6 highr_0.9 boot_1.3-28
[61] rlang_1.0.2 pkgconfig_2.0.3 evaluate_0.15
[64] lattice_0.20-45 labeling_0.4.2 processx_3.5.2
[67] tidyselect_1.1.2 here_1.0.1 GGally_2.1.2
[70] plyr_1.8.6 magrittr_2.0.2 R6_2.5.1
[73] generics_0.1.2 base64url_1.4 DBI_1.1.2
[76] pillar_1.7.0 haven_2.4.3 whisker_0.4
[79] withr_2.5.0 abind_1.4-5 modelr_0.1.8
[82] crayon_1.5.0 car_3.0-12 utf8_1.2.2
[85] tmvnsim_1.0-2 RApiSerialize_0.1.0 tzdb_0.2.0
[88] rmarkdown_2.12 grid_4.1.2 readxl_1.3.1
[91] data.table_1.14.2 callr_3.7.0 git2r_0.29.0
[94] reprex_2.0.1 digest_0.6.29 httpuv_1.6.5
[97] RcppParallel_5.1.5 munsell_0.5.0 stringfish_0.15.5
[100] bslib_0.3.1