Last updated: 2021-03-28
Checks: 6 1
Knit directory:
fa_sim_cal/
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Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: .tresorit/
Ignored: _targets/
Ignored: data/VR_20051125.txt.xz
Ignored: output/blk_char.fst
Ignored: output/ent_blk.fst
Ignored: output/ent_cln.fst
Ignored: output/ent_raw.fst
Ignored: renv/library/
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Ignored: renv/staging/
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Modified: analysis/m_00_status.Rmd
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | ebd787e | Ross Gayler | 2021-03-28 | WIP |
| html | ebd787e | Ross Gayler | 2021-03-28 | WIP |
| html | ef1be3d | Ross Gayler | 2021-03-27 | WIP |
| html | a0b6a56 | Ross Gayler | 2021-03-21 | Build site. |
| Rmd | 981bddc | Ross Gayler | 2021-03-21 | WIP |
| html | 6b6e336 | Ross Gayler | 2021-03-21 | Build site. |
| Rmd | c2b8651 | Ross Gayler | 2021-03-21 | wflow_publish(c(“analysis/m_00_status.Rmd”, “analysis/index.Rmd”)) |
| html | 630b399 | Ross Gayler | 2021-03-21 | Build site. |
| Rmd | 7793ab2 | Ross Gayler | 2021-03-09 | WIP |
| Rmd | 44bbff0 | Ross Gayler | 2021-03-08 | Merge branch ‘retrofit-targets’ of https://github.com/rgayler/fa_sim_cal into retrofit-targets |
| Rmd | 810d4ff | Ross Gayler | 2021-03-06 | WIP |
| Rmd | eca4a72 | Ross Gayler | 2021-03-06 | WIP |
| Rmd | dcdc6a2 | Ross Gayler | 2021-03-05 | WIP |
This notebook displays the status of the project workflow, that is, whether everything is computationally up to date. It displays the status as at the time the notebook is executed, so if the status has changed since this notebook was last executed that fact won’t be reflected in this rendered notebook.
This notebook is currently intended to be run manually when you feel the need, for example, when returning to the project.
{renv} status{renv} tracks the used R packages and their versions.
# Get {targets} to tell {renv} which packages it uses
targets::tar_renv()
renv::status()* The project is already synchronized with the lockfile.{targets} status{targets} is used to track the computational dependencies between the
project components and orchestrate recalculation when any components are
changed.
c_* components are in the core pipelinep_* components are in the publications pipelinesm_* components are in the meta pipelinesFunctions may be used across multiple pipeline categories, so function names are not prefixed.
Each of the meta pipelines ends at a report rendered from an Rmd file
that is managed jointly by {targets} and {workflowr}. {targets} is
aware of the upstream dependencies (data and functions) and the Rmd
file itself. If any of these is invalidated tar_make() will rebuild
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{targets} is not aware of the rendered report file. The rendered
report file is managed exclusively by {workflowr}. This means that you
can use {workflowr} to build and publish the report without making
{targets} think that the report is out of date because {workflowr}
has re-rendered it.
# outline
targets::tar_glimpse()# detail
targets::tar_visnetwork(){workflowr} status{workflowr} is used to render the meta documents
(analysis/m_*.Rmd) and build the project website.
{workflowr} is only concerned with the modification and git commit
dates of the Rmd and HTML files, whereas {targets} is concerned
with the computational dependencies. Thus, you should rely on the
{targets} status to ensure the meta reports are computationally up to
date, then rely on the {workflowr} status to manage the building and
publication of the entire website.
workflowr::wflow_status()Status of 20 Rmd files
Totals:
18 Published (7 Modified)
2 Unpublished
The following Rmd files require attention:
Mod analysis/01-1_get_data.Rmd
Mod analysis/index.Rmd
Mod analysis/m_00_status.Rmd
Mod analysis/m_01_1_read_raw_entity_data.Rmd
Mod analysis/m_01_2_exclusions.Rmd
Mod analysis/m_01_3_parse_dates.Rmd
Mod analysis/workflow.Rmd
Unp analysis/03-1_name_eql_global.Rmd
Unp analysis/m_02_check_entity_data.Rmd
Key: Mod = Modified, Unp = Unpublished
The current Git status is:
status substatus file
unstaged modified analysis/m_00_status.Rmd
To publish your changes as part of your website, use `wflow_publish()`.
To commit your changes without publishing them yet, use
`wflow_git_commit()`.
sessionInfo()R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.10
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8
[5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8
[7] LC_PAPER=en_AU.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] here_1.0.1 workflowr_1.6.2 targets_0.3.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.6 git2r_0.28.0 jquerylib_0.1.3 bslib_0.2.4
[5] compiler_4.0.3 pillar_1.5.1 later_1.1.0.1 tools_4.0.3
[9] digest_0.6.27 jsonlite_1.7.2 evaluate_0.14 lifecycle_1.0.0
[13] tibble_3.1.0 pkgconfig_2.0.3 rlang_0.4.10 igraph_1.2.6
[17] rstudioapi_0.13 cli_2.3.1 yaml_2.2.1 xfun_0.22
[21] stringr_1.4.0 withr_2.4.1 knitr_1.31 htmlwidgets_1.5.3
[25] sass_0.3.1 vctrs_0.3.6 fs_1.5.0 rprojroot_2.0.2
[29] tidyselect_1.1.0 glue_1.4.2 data.table_1.14.0 R6_2.5.0
[33] processx_3.5.0 fansi_0.4.2 bookdown_0.21 rmarkdown_2.7
[37] whisker_0.4 callr_3.5.1 purrr_0.3.4 magrittr_2.0.1
[41] codetools_0.2-18 ps_1.6.0 promises_1.2.0.1 ellipsis_0.3.1
[45] htmltools_0.5.1.1 assertthat_0.2.1 renv_0.13.1 httpuv_1.5.5
[49] utf8_1.2.1 stringi_1.5.3 visNetwork_2.0.9 crayon_1.4.1