ld_analysis
sq-96
2021-07-05
Last updated: 2021-07-05
Checks: 7 0
Knit directory: LD_Analysis/
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The first ten eigenvalues
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
EUR_sub1 29.065 18.070 10.046 9.695 8.266 3.396 2.458 1.798 1.714 1.609
EUR_sub2 31.328 18.959 9.930 8.578 7.777 2.856 2.765 1.860 1.630 1.561
EUR_sub3 32.999 17.835 10.803 9.199 7.103 2.979 2.291 1.768 1.573 1.536
EUR_All 31.035 18.421 9.739 9.504 7.758 3.028 2.508 1.734 1.673 1.487Pairwise correlation of the first ten eigenvectors
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
sub1.vs.sub2 0.956 0.995 -0.623 0.571 0.941 -0.087 0.084 0.150 -0.382 0.181
sub1.vs.sub3 0.953 0.992 -0.717 0.776 0.854 0.972 0.947 -0.886 0.049 0.412
sub2.vs.sub3 0.956 0.993 0.061 0.152 0.797 -0.083 0.109 -0.199 0.277 -0.218
sub1.vs.All 0.977 0.999 0.961 0.991 0.954 0.994 0.983 -0.961 -0.805 0.342
sub2.vs.All 0.987 0.997 -0.652 0.622 0.911 -0.092 0.092 -0.332 -0.018 0.389
sub3.vs.All 0.988 0.997 -0.784 0.793 0.967 0.988 0.942 0.884 -0.203 -0.216
The first ten eigenvalues
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
EUR_sub1 64.567 41.246 27.939 22.025 16.730 12.993 10.882 8.684 8.098 5.896
EUR_sub2 58.766 44.374 28.344 19.114 17.447 15.394 10.693 9.354 8.029 6.484
EUR_sub3 63.827 44.576 28.343 23.739 16.849 15.974 9.240 8.869 8.085 5.096
EUR_All 61.384 42.751 28.386 21.892 16.766 15.061 10.140 9.074 8.152 5.691Pairwise correlation of the first ten eigenvectors
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
sub1.vs.sub2 0.974 0.931 -0.969 -0.954 -0.966 -0.948 0.932 0.950 0.920 -0.830
sub1.vs.sub3 0.983 0.979 0.982 0.975 0.904 0.946 -0.882 0.809 0.752 0.584
sub2.vs.sub3 0.978 0.965 -0.959 -0.937 -0.849 -0.876 -0.802 0.765 0.771 -0.650
sub1.vs.All 0.995 0.982 0.992 -0.989 0.990 0.989 0.976 0.988 0.976 0.941
sub2.vs.All 0.990 0.981 -0.990 0.982 -0.983 -0.977 0.968 0.967 0.967 -0.916
sub3.vs.All 0.993 0.994 0.982 -0.978 0.919 0.944 -0.913 0.846 0.830 0.766Heatmap of LD matrix
sessionInfo()R version 4.0.4 (2021-02-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Scientific Linux 7.4 (Nitrogen)
Matrix products: default
BLAS/LAPACK: /software/openblas-0.3.13-el7-x86_64/lib/libopenblas_haswellp-r0.3.13.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RColorBrewer_1.1-2 plot.matrix_1.6 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.6 whisker_0.4 knitr_1.33 magrittr_2.0.1
[5] R6_2.5.0 rlang_0.4.11 fansi_0.5.0 highr_0.9
[9] stringr_1.4.0 tools_4.0.4 xfun_0.24 utf8_1.2.1
[13] git2r_0.28.0 jquerylib_0.1.4 htmltools_0.5.1.1 ellipsis_0.3.2
[17] rprojroot_2.0.2 yaml_2.2.1 digest_0.6.27 tibble_3.1.2
[21] lifecycle_1.0.0 crayon_1.4.1 later_1.2.0 sass_0.4.0
[25] vctrs_0.3.8 promises_1.2.0.1 fs_1.5.0 glue_1.4.2
[29] evaluate_0.14 rmarkdown_2.9 stringi_1.6.2 bslib_0.2.5.1
[33] compiler_4.0.4 pillar_1.6.1 jsonlite_1.7.2 httpuv_1.6.1
[37] pkgconfig_2.0.3