Last updated: 2020-07-29
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Knit directory: scATACseq-topics/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 240d1c2 | kevinlkx | 2020-07-29 | add literatures for scATAC-seq datasets |
Preissl, S., Fang, R., Huang, H., Zhao, Y., Raviram, R., Gorkin, D., Zhang, Y., Sos, B., Afzal, V., Dickel, D., Kuan, S., Visel, A., Pennacchio, L., Zhang, K., Ren, B. (2018). Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation Nature Neuroscience 21(3), 432 439. https://dx.doi.org/10.1038/s41593-018-0079-3
Buenrostro, J., Corces, M., Lareau, C., Wu, B., Schep, A., Aryee, M., Majeti, R., Chang, H., Greenleaf, W. (2018). Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation Cell 173(6), 1535 1537.e16. https://dx.doi.org/10.1016/j.cell.2018.03.074
Cusanovich, D., Hill, A., Aghamirzaie, D., Daza, R., Pliner, H., Berletch, J., Filippova, G., Huang, X., Christiansen, L., DeWitt, W., Lee, C., Regalado, S., Read, D., Steemers, F., Disteche, C., Trapnell, C., Shendure, J. (2018). A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility Cell 174(5), 1 35. https://dx.doi.org/10.1016/j.cell.2018.06.052
Cao, J., Packer, J., Ramani, V., Cusanovich, D., Huynh, C., Daza, R., Qiu, X., Lee, C., Furlan, S., Steemers, F., Adey, A., Waterston, R., Trapnell, C., Shendure, J. (2017). Comprehensive single-cell transcriptional profiling of a multicellular organism. Science 357(6352), 661 667. https://dx.doi.org/10.1126/science.aam8940
Lareau, C., Duarte, F., Chew, J., Kartha, V., Burkett, Z., Kohlway, A., Pokholok, D., Aryee, M., Steemers, F., Lebofsky, R., Buenrostro, J. (2019). Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility Nature Biotechnology 518(1), 1 15. https://dx.doi.org/10.1038/s41587-019-0147-6
Pijuan-Sala, B., Wilson, N., Xia, J., Hou, X., Hannah, R., Kinston, S., Calero-Nieto, F., Poirion, O., Preissl, S., Liu, F., Göttgens, B. (2020). Single-cell chromatin accessibility maps reveal regulatory programs driving early mouse organogenesis Nature Cell Biology https://dx.doi.org/10.1038/s41556-020-0489-9