Last updated: 2020-08-03

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RSS-NET results

The following table reports enrichment Bayes factors (BFs) of 38 inferred gene regulatory networks and 1 near-gene control network for a given trait. For each network, we evaluate BFs of the same baseline model (\(M_{0}\): \(\theta=0\) and \(\sigma^2=0\)) against 4 enrichment models (\(M_{1}\), \(M_{11}\), \(M_{12}\) and \(M_{13}\)). Rows are sorted by BFs based on \(M_{1}\) (the 2nd column).


LDSC and Pascal results

The following table reports minus log 10 enrichment \(p\)-values of LDSC and Pascal. Rows are sorted by \(p\)-values based on LDSC-baselineLD (the 3rd column). Empty entries correspond to zero \(p\)-values.



devtools::session_info()
─ Session info ───────────────────────────────────────────────────────────────
 setting  value                       
 version  R version 4.0.2 (2020-06-22)
 os       Ubuntu 18.04.4 LTS          
 system   x86_64, linux-gnu           
 ui       X11                         
 language (EN)                        
 collate  en_US.UTF-8                 
 ctype    en_US.UTF-8                 
 tz       America/Los_Angeles         
 date     2020-08-03                  

─ Packages ───────────────────────────────────────────────────────────────────
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[1] /home/maimaizhu/R/x86_64-pc-linux-gnu-library/4.0
[2] /usr/local/lib/R/site-library
[3] /usr/lib/R/site-library
[4] /usr/lib/R/library