Simulated individual-level data based on WTCCC & Liver-specific network

Last updated: 2018-09-20

• ✔ R Markdown file: up-to-date

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• ✔ Environment: empty

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• ✔ Seed: set.seed(20180719)

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• ✔ Session information: recorded

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• ✔ Repository version: f31ab76

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      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
  
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      Modified:   analysis/index.Rmd
      Deleted:    analysis/snp2net_liver.Rmd
  
  

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True total number of genes with nonzero effect:  1804 
Estimated total number of genes with nonzero effect:  1812.836 
True PVE:  0.2 
Estimated PVE: 0.2028945 

True total number of genes with nonzero effect:  3640 
Estimated total number of genes with nonzero effect:  3647.185 
True PVE:  0.2 
Estimated PVE: 0.1916802 

True total number of genes with nonzero effect:  3640 
Estimated total number of genes with nonzero effect:  3613.789 
True PVE:  0.4 
Estimated PVE: 0.4048478 

sessionInfo()

R version 3.5.1 (2018-07-02)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.6

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] bindrcpp_0.2.2 plotROC_2.2.1  ggpubr_0.1.8   magrittr_1.5  
[5] ggplot2_3.0.0  R.matlab_3.6.1

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.18      compiler_3.5.1    pillar_1.3.0     
 [4] git2r_0.23.0      plyr_1.8.4        workflowr_1.1.1  
 [7] bindr_0.1.1       R.methodsS3_1.7.1 R.utils_2.7.0    
[10] tools_3.5.1       digest_0.6.17     evaluate_0.11    
[13] tibble_1.4.2      gtable_0.2.0      pkgconfig_2.0.2  
[16] rlang_0.2.2       yaml_2.2.0        withr_2.1.2      
[19] stringr_1.3.1     dplyr_0.7.6       knitr_1.20       
[22] cowplot_0.9.3     rprojroot_1.3-2   grid_3.5.1       
[25] tidyselect_0.2.4  glue_1.3.0        R6_2.2.2         
[28] rmarkdown_1.10    purrr_0.2.5       whisker_0.3-2    
[31] backports_1.1.2   scales_1.0.0      htmltools_0.3.6  
[34] assertthat_0.2.0  colorspace_1.3-2  labeling_0.3     
[37] stringi_1.2.4     lazyeval_0.2.1    munsell_0.5.0    
[40] crayon_1.3.4      R.oo_1.22.0      

This reproducible R Markdown analysis was created with workflowr 1.1.1