Last updated: 2019-11-07

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Knit directory: rss-peca/

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Table legends

Enrichment results of network genes are summarized by the following quantities.

Note that the XX reflect the significance of enrichment, whereas XX capture the magnitude of enrichment.

Enrichment results


─ Session info ──────────────────────────────────────────────────────────
 setting  value                       
 version  R version 3.6.1 (2019-07-05)
 os       Ubuntu 18.04.3 LTS          
 system   x86_64, linux-gnu           
 ui       X11                         
 language (EN)                        
 collate  en_US.UTF-8                 
 ctype    en_US.UTF-8                 
 tz       America/Los_Angeles         
 date     2019-11-07                  

─ Packages ──────────────────────────────────────────────────────────────
 package     * version date       lib source        
 assertthat    0.2.1   2019-03-21 [1] CRAN (R 3.6.0)
 backports     1.1.5   2019-10-02 [1] CRAN (R 3.6.1)
 callr         3.3.2   2019-09-22 [1] CRAN (R 3.6.1)
 cli           1.1.0   2019-03-19 [1] CRAN (R 3.6.0)
 crayon        1.3.4   2017-09-16 [1] CRAN (R 3.6.0)
 crosstalk     1.0.0   2016-12-21 [1] CRAN (R 3.6.0)
 desc          1.2.0   2018-05-01 [1] CRAN (R 3.6.0)
 devtools      2.2.1   2019-09-24 [1] CRAN (R 3.6.1)
 digest        0.6.22  2019-10-21 [1] CRAN (R 3.6.1)
 dplyr       * 0.8.3   2019-07-04 [1] CRAN (R 3.6.1)
 DT          * 0.9     2019-09-17 [1] CRAN (R 3.6.1)
 ellipsis      0.3.0   2019-09-20 [1] CRAN (R 3.6.1)
 evaluate      0.14    2019-05-28 [1] CRAN (R 3.6.0)
 fastmap       1.0.1   2019-10-08 [1] CRAN (R 3.6.1)
 fs            1.3.1   2019-05-06 [1] CRAN (R 3.6.0)
 git2r         0.26.1  2019-06-29 [1] CRAN (R 3.6.0)
 glue          1.3.1   2019-03-12 [1] CRAN (R 3.6.0)
 htmltools     0.4.0   2019-10-04 [1] CRAN (R 3.6.1)
 htmlwidgets   1.5.1   2019-10-08 [1] CRAN (R 3.6.1)
 httpuv        1.5.2   2019-09-11 [1] CRAN (R 3.6.1)
 jsonlite      1.6     2018-12-07 [1] CRAN (R 3.6.0)
 knitr         1.25    2019-09-18 [1] CRAN (R 3.6.1)
 later         1.0.0   2019-10-04 [1] CRAN (R 3.6.1)
 magrittr      1.5     2014-11-22 [1] CRAN (R 3.6.0)
 memoise       1.1.0   2017-04-21 [1] CRAN (R 3.6.0)
 mime          0.7     2019-06-11 [1] CRAN (R 3.6.0)
 pillar        1.4.2   2019-06-29 [1] CRAN (R 3.6.0)
 pkgbuild      1.0.6   2019-10-09 [1] CRAN (R 3.6.1)
 pkgconfig     2.0.3   2019-09-22 [1] CRAN (R 3.6.1)
 pkgload       1.0.2   2018-10-29 [1] CRAN (R 3.6.0)
 prettyunits   1.0.2   2015-07-13 [1] CRAN (R 3.6.0)
 processx      3.4.1   2019-07-18 [1] CRAN (R 3.6.1)
 promises      1.1.0   2019-10-04 [1] CRAN (R 3.6.1)
 ps            1.3.0   2018-12-21 [1] CRAN (R 3.6.0)
 purrr         0.3.3   2019-10-18 [1] CRAN (R 3.6.1)
 R6            2.4.0   2019-02-14 [1] CRAN (R 3.6.0)
 Rcpp          1.0.2   2019-07-25 [1] CRAN (R 3.6.1)
 remotes       2.1.0   2019-06-24 [1] CRAN (R 3.6.0)
 rlang         0.4.1   2019-10-24 [1] CRAN (R 3.6.1)
 rmarkdown     1.16    2019-10-01 [1] CRAN (R 3.6.1)
 rprojroot     1.3-2   2018-01-03 [1] CRAN (R 3.6.0)
 sessioninfo   1.1.1   2018-11-05 [1] CRAN (R 3.6.0)
 shiny         1.4.0   2019-10-10 [1] CRAN (R 3.6.1)
 stringi       1.4.3   2019-03-12 [1] CRAN (R 3.6.0)
 stringr       1.4.0   2019-02-10 [1] CRAN (R 3.6.0)
 testthat      2.3.0   2019-11-05 [1] CRAN (R 3.6.1)
 tibble        2.1.3   2019-06-06 [1] CRAN (R 3.6.0)
 tidyselect    0.2.5   2018-10-11 [1] CRAN (R 3.6.0)
 usethis       1.5.1   2019-07-04 [1] CRAN (R 3.6.1)
 whisker       0.4     2019-08-28 [1] CRAN (R 3.6.1)
 withr         2.1.2   2018-03-15 [1] CRAN (R 3.6.0)
 workflowr     1.5.0   2019-11-01 [1] CRAN (R 3.6.1)
 xfun          0.10    2019-10-01 [1] CRAN (R 3.6.1)
 xtable        1.8-4   2019-04-21 [1] CRAN (R 3.6.0)
 yaml          2.2.0   2018-07-25 [1] CRAN (R 3.6.0)

[1] /home/maimaizhu/R/x86_64-pc-linux-gnu-library/3.6
[2] /usr/local/lib/R/site-library
[3] /usr/lib/R/site-library
[4] /usr/lib/R/library