Last updated: 2018-12-14
workflowr checks: (Click a bullet for more information) ✔ R Markdown file: up-to-date
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
✔ Repository version: 1cc5f8a
wflow_publish
or wflow_git_commit
). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: BUSpaRse_notebooks.Rproj
Ignored: analysis/10xv2_cache/
Ignored: analysis/10xv3_cache/
Ignored: data/fastqs/
Ignored: data/hgmm_1k_fastqs.tar
Ignored: data/hgmm_1k_v3_fastqs.tar
Ignored: data/hgmm_1k_v3_fastqs/
Ignored: data/hs_cdna.fa.gz
Ignored: data/mm_cdna.fa.gz
Ignored: data/whitelist_v2.txt
Ignored: data/whitelist_v3.txt.gz
Ignored: output/hs_mm_tr_index.idx
Ignored: output/out_hgmm1k/
Ignored: output/out_hgmm1k_v3/
Unstaged changes:
Modified: analysis/_site.yml
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
Example notebooks that converts output of kallisto bus
into sparse matrix that can be used in downstream analyses such as with Seurat.
This reproducible R Markdown analysis was created with workflowr 1.1.1