Last updated: 2018-12-14

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• ✔ Repository version: 0dc76a9

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      Ignored:    BUSpaRse_notebooks.Rproj
      Ignored:    analysis/10xv2_cache/
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Expand here to see past versions:

File	Version	Author	Date	Message
Rmd	0dc76a9	Lambda Moses	2018-12-14	Changed to new url
html	540134b	Lambda Moses	2018-12-14	Build site.
Rmd	e40da79	Lambda Moses	2018-12-14	Changed URL as this repo is transferred to BUStools
html	fff442d	Lambda Moses	2018-12-14	Build site.
Rmd	695e202	Lambda Moses	2018-12-14	Changed name to BUSpaRse
html	9209390	Lambda Moses	2018-12-14	Update website
Rmd	37238e5	Lambda Moses	2018-12-14	Link to this GitHub repo on the website
html	2da3b35	Lambda Moses	2018-12-14	Build site.
Rmd	55164fb	Lambda Moses	2018-12-14	Start workflowr project.

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This repository has example notebooks that demonstrate how to go from fastq files to sparse matrices for scRNA-seq data from start to end. To run the notebooks, please install kallisto, bustools, and the BUSpaRse R package.

1. 10x v2 chemistry - 1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells
2. 10x v3 chemistry - 1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells (coming soon)

If you have problems with the notebooks, or have questions about them, please go to the GitHub repo of this website.

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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