Last updated: 2021-08-18

Checks: 6 1

Knit directory: WP1/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

The command set.seed(20210216) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 90cda7b. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    code/ny-alesund_cc_pf_rws.R
    Ignored:    data/pg_data/
    Ignored:    metadata/pangaea_parameters.tab

Unstaged changes:
    Modified:   analysis/data_summary.Rmd
    Modified:   code/data_analysis.R
    Modified:   code/functions.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/data_summary.Rmd) and HTML (docs/data_summary.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 90cda7b Robert 2021-08-18 First draft of data summary page
html 90cda7b Robert 2021-08-18 First draft of data summary page
Rmd 2136a33 Robert 2021-08-17 Addressed the issue of sub-daily data
html 36454cc Robert 2021-08-17 Build site.
Rmd 438add7 Robert 2021-08-17 Re-built site.

Overview

Overview

This document contains a summary of the data products produced for WP1 of the FACE-IT project. These data are available to all FACE-IT members via password protected pCloud access. These data are also used in the meta-analysis review of the key drivers of change to arctic fjord ecosystems.

European Arctic

Svalbard

Kongsfjorden

Version Author Date
90cda7b Robert 2021-08-18

Isfjorden

Version Author Date
90cda7b Robert 2021-08-18

Inglefieldbukta

Version Author Date
90cda7b Robert 2021-08-18

Greenland

Young Sound

Version Author Date
90cda7b Robert 2021-08-18

Disko Bay

Version Author Date
90cda7b Robert 2021-08-18

Nuup Kangerlua

Version Author Date
90cda7b Robert 2021-08-18

Norway

Porsangerfjorden

Version Author Date
90cda7b Robert 2021-08-18

References


R version 4.1.1 (2021-08-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=fr_FR.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] parallel  grid      stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] doParallel_1.0.16 iterators_1.0.13  foreach_1.5.1     pangaear_1.1.0   
 [5] sf_1.0-0          sp_1.4-5          ggOceanMaps_1.1.9 ggspatial_1.1.5  
 [9] gtable_0.3.0      gridExtra_2.3     forcats_0.5.1     stringr_1.4.0    
[13] dplyr_1.0.6       purrr_0.3.4       readr_1.4.0       tidyr_1.1.3      
[17] tibble_3.1.2      ggplot2_3.3.3     tidyverse_1.3.1  

loaded via a namespace (and not attached):
 [1] colorspace_2.0-1   ggsignif_0.6.2     ellipsis_0.3.2     class_7.3-19      
 [5] rio_0.5.26         rprojroot_2.0.2    fs_1.5.0           httpcode_0.3.0    
 [9] rstudioapi_0.13    proxy_0.4-26       ggpubr_0.4.0       farver_2.1.0      
[13] fansi_0.5.0        lubridate_1.7.10   xml2_1.3.2         codetools_0.2-18  
[17] knitr_1.33         jsonlite_1.7.2     workflowr_1.6.2    broom_0.7.7       
[21] dbplyr_2.1.1       rgeos_0.5-5        oai_0.3.2          hoardr_0.5.2      
[25] compiler_4.1.1     httr_1.4.2         backports_1.2.1    assertthat_0.2.1  
[29] cli_2.5.0          later_1.2.0        htmltools_0.5.1.1  tools_4.1.1       
[33] glue_1.4.2         maps_3.3.0         rappdirs_0.3.3     Rcpp_1.0.6        
[37] carData_3.0-4      cellranger_1.1.0   jquerylib_0.1.4    raster_3.4-10     
[41] vctrs_0.3.8        crul_1.1.0         xfun_0.23          openxlsx_4.2.3    
[45] rvest_1.0.0        lifecycle_1.0.0    rstatix_0.7.0      scales_1.1.1      
[49] hms_1.1.0          promises_1.2.0.1   yaml_2.2.1         curl_4.3.1        
[53] sass_0.4.0         stringi_1.6.2      highr_0.9          e1071_1.7-7       
[57] zip_2.2.0          rlang_0.4.11       pkgconfig_2.0.3    evaluate_0.14     
[61] lattice_0.20-44    labeling_0.4.2     cowplot_1.1.1      tidyselect_1.1.1  
[65] plyr_1.8.6         magrittr_2.0.1     R6_2.5.0           generics_0.1.0    
[69] DBI_1.1.1          pillar_1.6.1       haven_2.4.1        whisker_0.4       
[73] foreign_0.8-81     withr_2.4.2        units_0.7-2        abind_1.4-5       
[77] modelr_0.1.8       crayon_1.4.1       car_3.0-10         KernSmooth_2.23-20
[81] utf8_1.2.1         rmarkdown_2.8      readxl_1.3.1       data.table_1.14.0 
[85] git2r_0.28.0       reprex_2.0.0       digest_0.6.27      classInt_0.4-3    
[89] httpuv_1.6.1       munsell_0.5.0      viridisLite_0.4.0  bslib_0.2.5.1