Last updated: 2023-12-05

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Knit directory: mi_spatialomics/

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Repository version: 5dee03d

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/data_processing.Rmd) and HTML (docs/data_processing.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 5dee03d FloWuenne 2023-09-04 Latest code update.
html 5dee03d FloWuenne 2023-09-04 Latest code update.
html 67e546d FloWuenne 2023-07-23 Build site.
html 3b5ca40 FloWuenne 2023-06-12 Added code for supplementary Figures.
html 51754b9 FloWuenne 2023-06-12 Build site.
html d764fa8 FloWuenne 2023-06-12 Build site.
Rmd 62020bf FloWuenne 2023-06-12 Configure site header.

Molecular Cartography

Processing of raw data

These scripts were used to process raw Molecular Cartography data using the nf-core/molkart pipeline (revision: 3c46f9d1f88540131ab4d35bb4f33b2648efd5bc). The configurations, parameters and models used to process the data can be found in the following files:

Lunaphore

Raw Lunaphore images were processed using MCMICRO. The configurations, parameters and commands used can be found in the following files: