Last updated: 2023-08-24

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Knit directory: mi_spatialomics/

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File Version Author Date Message
html d7ea71e FloWuenne 2023-08-11 Build site.
Rmd 64318a3 FloWuenne 2023-08-11 wflow_publish(c("analysis/molkart.process_quantifications_seurat.Rmd",
Rmd 9b98d64 FloWuenne 2023-08-04 Updated python and R scripts for Molkart.
html 67e546d FloWuenne 2023-07-23 Build site.
Rmd ed31d81 FloWuenne 2023-07-02 Finalized proteomics analysis.
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Molecular Cartography

These scripts were used to analyze Molecular Cartography data from the nf-Molkart pipeline.

  1. QC RNA spots
  2. Seurat analysis of Molkart output
  3. []

Lunaphore

These scripts were used to analyze SeqIF data from the Lunaphore COMET platform processed using MCMICRO.

  1. Pixie : Marker images, pixel and cell clusters using Napari
  2. Pixie : Heatmaps for pixel and cell clustering and cell cluster changes over time