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Knit directory: mi_spatialomics/
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This repository contains all code used in the project “Highly-multiplexed imaging of immune cell infiltration routes in myocardial infarction”.
The repository is structured the following way:
dir_tree(".", recurse = 0, types = "directory").
├── LICENSE
├── README.md
├── _workflowr.yml
├── analysis
├── annotations
├── code
├── data
├── docs
├── figures
├── mi_spatialomics.Rproj
├── output
├── pipeline_configs
├── plots
├── references
├── renv
├── renv.lock
├── sample_2d_r1_s1
└── sample_4h_r1_s1
sessionInfo()R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.1.2
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Europe/Berlin
tzcode source: internal
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] fs_1.6.3 workflowr_1.7.1
loaded via a namespace (and not attached):
[1] jsonlite_1.8.8 crayon_1.5.2 compiler_4.3.1
[4] BiocManager_1.30.22 renv_1.0.3 promises_1.2.1
[7] Rcpp_1.0.12 stringr_1.5.1 git2r_0.33.0
[10] callr_3.7.3 later_1.3.2 jquerylib_0.1.4
[13] yaml_2.3.8 fastmap_1.1.1 R6_2.5.1
[16] knitr_1.45 tibble_3.2.1 rprojroot_2.0.4
[19] bslib_0.6.1 pillar_1.9.0 rlang_1.1.3
[22] utf8_1.2.4 cachem_1.0.8 stringi_1.8.3
[25] httpuv_1.6.13 xfun_0.41 getPass_0.2-4
[28] sass_0.4.8 cli_3.6.2 magrittr_2.0.3
[31] ps_1.7.5 digest_0.6.34 processx_3.8.3
[34] rstudioapi_0.15.0 lifecycle_1.0.4 vctrs_0.6.5
[37] evaluate_0.23 glue_1.7.0 whisker_0.4.1
[40] fansi_1.0.6 rmarkdown_2.25 httr_1.4.7
[43] tools_4.3.1 pkgconfig_2.0.3 htmltools_0.5.7