Last updated: 2021-04-30

Checks: 2 0

Knit directory: CassavaNIRS/

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The results in this page were generated with repository version 759b463. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    Hershberger_CassavaNIRS_2021.zip
    Ignored:    analysis/.DS_Store
    Ignored:    code/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/Cassavabase_phenotypes_20210419.csv
    Ignored:    data/Corrected_metadata/
    Ignored:    data/README.html
    Ignored:    data/README.txt
    Ignored:    data/Spectra/
    Ignored:    data/TrialNameKey.csv
    Ignored:    data/raw_pheno.csv
    Ignored:    data/raw_scans.csv
    Ignored:    output/.DS_Store
    Ignored:    output/S3_removed_scans.csv
    Ignored:    output/cv_results.csv
    Ignored:    output/full_filtered_plots.csv
    Ignored:    output/full_filtered_subsamples.csv
    Ignored:    output/full_filtered_unaggregated.csv
    Ignored:    output/within_trial_waves_PLSR.csv
    Ignored:    output/within_trial_waves_RF.csv
    Ignored:    output/within_trial_waves_RF_importance.csv
    Ignored:    output/within_trial_waves_SVM.csv

Staged changes:
    Modified:   .gitignore
    Modified:   analysis/filter_aggregate.Rmd
    Modified:   code/server_CV.R
    Modified:   code/server_within_trial_predictions_PLSR_RF_SVM.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 8f143af Jenna Hershberger 2021-04-21 Add content
Rmd fecea09 Jenna Hershberger 2021-04-19 Start workflowr project.

MIT License

Copyright (c) 2021 The Gore Lab

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.