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github repository link


1 Disease burden statistics


2 Disease/trait labels

2.1 Categorize GWAS catalogy traits into disease, response etc.

[1] "Number of unique disease terms: 2299"

2.2 Harmonizing disease trait labels

[1] "Number of unique disease terms: 2194"
[1] "Number of unique disease terms: 1888"
[1] "Number of unique disease terms: 1675"
[1] "Number of unique disease terms: 1579"


3 Cohort labels

Allowing us to deal with non-independance between samples.


4 Calculating ancestry biases


5 Paper citation metrics



6 Archived / not currently being used:


sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS 15.6.1

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/Los_Angeles
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
[1] workflowr_1.7.1

loaded via a namespace (and not attached):
 [1] vctrs_0.6.5       httr_1.4.7        cli_3.6.5         knitr_1.50       
 [5] rlang_1.1.6       xfun_0.52         stringi_1.8.7     processx_3.8.6   
 [9] renv_1.0.3        promises_1.3.3    data.table_1.17.8 jsonlite_2.0.0   
[13] glue_1.8.0        rprojroot_2.1.0   git2r_0.36.2      htmltools_0.5.8.1
[17] httpuv_1.6.16     ps_1.9.1          sass_0.4.10       rmarkdown_2.29   
[21] jquerylib_0.1.4   tibble_3.3.0      evaluate_1.0.4    fastmap_1.2.0    
[25] yaml_2.3.10       lifecycle_1.0.4   whisker_0.4.1     stringr_1.5.1    
[29] compiler_4.3.1    fs_1.6.6          pkgconfig_2.0.3   Rcpp_1.1.0       
[33] here_1.0.1        rstudioapi_0.17.1 later_1.4.2       digest_0.6.37    
[37] R6_2.6.1          pillar_1.11.0     callr_3.7.6       magrittr_2.0.3   
[41] bslib_0.9.0       tools_4.3.1       cachem_1.1.0      getPass_0.2-4