Last updated: 2019-04-23
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Knit directory: HiCiPSC/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | a02a602 | Ittai Eres | 2019-03-14 | Build site. |
| html | 972c85a | Ittai Eres | 2019-03-14 | Build site. |
| Rmd | ef02896 | Ittai Eres | 2019-03-14 | Add Linear modeling QC and modify index.Rmd to reflect figures therein |
| html | 158b881 | Ittai Eres | 2019-03-13 | Build site. |
| Rmd | 67d6f15 | Ittai Eres | 2019-03-13 | Update directory storage of files; add in data frame of only contacts fixed within species. |
| html | 3d877d7 | Ittai Eres | 2019-03-12 | Build site. |
| Rmd | 607efb8 | Ittai Eres | 2019-03-12 | Initialize website with index and initial QC file. |
| Rmd | 9945292 | Ittai Eres | 2019-03-11 | Start workflowr project. |
This website details computational analyses done for the paper “Reorganization of 3D Genome Structure May Contribute to Gene Regulatory Evolution in Primates”. In this work, I utilized Hi-C and RNA-seq to find 3-dimensional regulatory differences affecting gene expression between humans and chimpanzees. Click on any of the links below to jump to that section of the analysis. Note that, for many interaction analyses, I repeated the same analysis using different normalization and significance-calling schmes (HOMER vs. Juicer); these are the larger headers:
###TAD Analyses * TAD Analyses