About

Last updated: 2022-06-27

Checks: 2 0

Knit directory: scSeq_Hefendehl/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 5bba014

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 5bba014. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.Rhistory
    Ignored:    data/ReloadAllData_Hefendehl_Stroke_Dec'21.RData
    Ignored:    data/Sample_Tables/
    Ignored:    data/counts.csv
    Ignored:    data/genecounts.csv
    Ignored:    data/microglia_protein.rds
    Ignored:    data/samples.integrated.RData
    Ignored:    data/tx2genes.csv
    Ignored:    output/Descriptives.Rmd
    Ignored:    output/Descriptives.docx

Untracked files:
    Untracked:  geneviewer/Dataset.RData
    Untracked:  workflow_helper.R

Unstaged changes:
    Modified:   .Rprofile
    Modified:   .gitattributes
    Modified:   .gitignore
    Modified:   README.md
    Modified:   _workflowr.yml
    Modified:   data/README.md
    Modified:   geneviewer/app.R
    Modified:   geneviewer/rsconnect/shinyapps.io/molgenlab/geneviewer.dcf
    Modified:   output/README.md
    Modified:   scSeq_Hefendehl.Rproj

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	3451e15	achiocch	2022-06-22	Build site.
Rmd	cfbfcf6	achiocch	2022-06-22	wflow_publish(c("analysis/", "docs/", "code/*"))
html	cfbfcf6	achiocch	2022-06-22	wflow_publish(c("analysis/", "docs/", "code/*"))
html	faf20e9	achiocch	2022-05-16	Build site.
html	51b35c8	achiocch	2022-04-26	Build site.
html	41d6cd0	achiocch	2022-04-26	Build site.
html	30f02eb	achiocch	2022-04-22	Build site.
html	9b778b1	achiocch	2022-04-19	Build site.
html	17114be	achiocch	2022-04-08	Build site.
html	cf395f4	achiocch	2022-03-30	Build site.
html	c998828	achiocch	2022-03-30	Build site.
html	87439a3	achiocch	2022-02-21	Build site.
html	d6f2105	achiocch	2022-02-21	Build site.
html	79dd0b1	achiocch	2022-02-21	Build site.
html	ded601d	achiocch	2022-02-03	Build site.
html	50fe211	achiocch	2022-02-03	Build site.
html	5fbdba4	achiocch	2022-02-02	Build site.
html	f010e79	achiocch	2022-01-31	Build site.
Rmd	4c4711a	achiocch	2022-01-31	wflow_publish(c("analysis/", "docs/", "code/*"))
html	4c4711a	achiocch	2022-01-31	wflow_publish(c("analysis/", "docs/", "code/*"))
Rmd	b1f348a	achiocch	2022-01-31	Start workflowr project.
Rmd	730bee8	achiocch	2022-01-31	Start workflowr project.