Last updated: 2020-12-22
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Knit directory: R-Guide/
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Rmd | 7a501fa | KaranSShakya | 2020-12-22 | TOC re-edited + correlation one var. |
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Rmd | 63011cb | KaranSShakya | 2020-12-21 | First commits |
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tidyverse - basic package for data wrangling
readxl - allows inputs of excel files
readr - allows inputs of text files
broom - result organization with tidy tibbles
stargazer - better organized regression outputs
Correlation is the strength of linear assosciation. It can be sensitive to outliers.
cor <- corr_1 %>%
summarise(r=cor(X, Y)) %>%
pull(r)
cor
[1] 0.8351438
Correlations can also be visualized through scatterplots which are the foundation of econometric analysis.
ggplot(corr_1, aes(x=X, y=Y))+
geom_point(alpha=0.5)+
geom_smooth(method = "lm", se=F)
Version | Author | Date |
---|---|---|
7a501fa | KaranSShakya | 2020-12-22 |
Linear regression can be performed by:
lm.model <- lm(Cancer_Diagnosis~Median_Income+Median_Age+Percent_Black, data=cancer_test)
lm.res <- augment(lm.model) # visualize all residuals in table form
The following code is for two variables:
lm.ls <- lm.res %>%
summarize(x.sd=sd(Median_Age), y.sd=sd(Cancer_Diagnosis),
cor=cor(Cancer_Diagnosis, Median_Age)) %>%
mutate(slope=(x.sd/y.sd)*cor) # Slope = 0.015
When we look at the lm model, the slope is also 0.015.
a. Linearity (scatterplot + residual plot - residuals needs to be random)
b. Nearly normal residuals (histogram of residuals or QQ residual plot)
c. Constant variability (residual plot)
Link for interactive regression diagnostic test.
a <- ggplot(lm.res, aes(x=.fitted, y=.resid))+
geom_point()+
geom_hline(yintercept = 0, linetype="dashed", color="red")+
labs(title="Residuals vs Fitted Values", x="Fitted Values", y="Residuals")
b <- ggplot(lm.res, aes(x=.resid))+
geom_density()+
labs(title="Histogram of residuals", x="Residuals") #geom_density can also be added
c <- ggplot(lm.res, aes(sample=.resid))+
stat_qq()+
stat_qq_line()
sessionInfo()
R version 4.0.0 (2020-04-24)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS 10.16
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] gridExtra_2.3 broom_0.5.6 readxl_1.3.1 forcats_0.5.0
[5] stringr_1.4.0 dplyr_0.8.5 purrr_0.3.4 readr_1.3.1
[9] tidyr_1.0.3 tibble_3.0.1 ggplot2_3.3.0 tidyverse_1.3.0
[13] workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.4.6 lubridate_1.7.8 lattice_0.20-41 assertthat_0.2.1
[5] rprojroot_1.3-2 digest_0.6.25 R6_2.4.1 cellranger_1.1.0
[9] backports_1.1.6 reprex_0.3.0 evaluate_0.14 httr_1.4.1
[13] pillar_1.4.4 rlang_0.4.6 rstudioapi_0.11 whisker_0.4
[17] Matrix_1.2-18 rmarkdown_2.6 labeling_0.3 splines_4.0.0
[21] munsell_0.5.0 compiler_4.0.0 httpuv_1.5.2 modelr_0.1.7
[25] xfun_0.19 pkgconfig_2.0.3 mgcv_1.8-31 htmltools_0.5.0
[29] tidyselect_1.1.0 fansi_0.4.1 crayon_1.3.4 dbplyr_1.4.3
[33] withr_2.2.0 later_1.0.0 grid_4.0.0 nlme_3.1-147
[37] jsonlite_1.6.1 gtable_0.3.0 lifecycle_0.2.0 DBI_1.1.0
[41] git2r_0.27.1 magrittr_1.5 scales_1.1.1 cli_2.0.2
[45] stringi_1.4.6 farver_2.0.3 fs_1.4.1 promises_1.1.0
[49] xml2_1.3.2 ellipsis_0.3.0 generics_0.0.2 vctrs_0.3.0
[53] tools_4.0.0 glue_1.4.1 hms_0.5.3 yaml_2.2.1
[57] colorspace_1.4-1 rvest_0.3.5 knitr_1.28 haven_2.2.0