Last updated: 2020-12-22

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1 Setting Up

1.1 Packages

  • tidyverse - basic package for data wrangling

  • readxl - allows inputs of excel files

  • readr - allows inputs of text files

  • broom - result organization with tidy tibbles

  • stargazer - better organized regression outputs

1.2 Output Tables

2 Initial Statistics

2.1 Correlation

2.1.1 One Variable

Correlation is the strength of linear assosciation. It can be sensitive to outliers.

cor <- corr_1 %>% 
  summarise(r=cor(X, Y)) %>% 
  pull(r)
cor
[1] 0.8351438

Correlations can also be visualized through scatterplots which are the foundation of econometric analysis.

ggplot(corr_1, aes(x=X, y=Y))+
  geom_point(alpha=0.5)+
  geom_smooth(method = "lm", se=F)

Version Author Date
7a501fa KaranSShakya 2020-12-22

2.1.2 Multiple Variables

3 Simple Linear Regression

Linear regression can be performed by:

lm.model <- lm(Cancer_Diagnosis~Median_Income+Median_Age+Percent_Black, data=cancer_test)
lm.res <- augment(lm.model) # visualize all residuals in table form

3.1 Least Square Lines

The following code is for two variables:

lm.ls <- lm.res %>% 
  summarize(x.sd=sd(Median_Age), y.sd=sd(Cancer_Diagnosis),
            cor=cor(Cancer_Diagnosis, Median_Age)) %>%
  mutate(slope=(x.sd/y.sd)*cor) # Slope = 0.015

When we look at the lm model, the slope is also 0.015.

3.2 Visualizing Assumptions

a. Linearity (scatterplot + residual plot - residuals needs to be random)

b. Nearly normal residuals (histogram of residuals or QQ residual plot)

c. Constant variability (residual plot)

Link for interactive regression diagnostic test.

a <- ggplot(lm.res, aes(x=.fitted, y=.resid))+
  geom_point()+
  geom_hline(yintercept = 0, linetype="dashed", color="red")+
  labs(title="Residuals vs Fitted Values", x="Fitted Values", y="Residuals")
b <- ggplot(lm.res, aes(x=.resid))+
  geom_density()+
  labs(title="Histogram of residuals", x="Residuals") #geom_density can also be added
c <- ggplot(lm.res, aes(sample=.resid))+
  stat_qq()+
  stat_qq_line()

3.3 Dummy Variables

4 Hypothesis Testing


sessionInfo()
R version 4.0.0 (2020-04-24)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS  10.16

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] gridExtra_2.3   broom_0.5.6     readxl_1.3.1    forcats_0.5.0  
 [5] stringr_1.4.0   dplyr_0.8.5     purrr_0.3.4     readr_1.3.1    
 [9] tidyr_1.0.3     tibble_3.0.1    ggplot2_3.3.0   tidyverse_1.3.0
[13] workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.4.6     lubridate_1.7.8  lattice_0.20-41  assertthat_0.2.1
 [5] rprojroot_1.3-2  digest_0.6.25    R6_2.4.1         cellranger_1.1.0
 [9] backports_1.1.6  reprex_0.3.0     evaluate_0.14    httr_1.4.1      
[13] pillar_1.4.4     rlang_0.4.6      rstudioapi_0.11  whisker_0.4     
[17] Matrix_1.2-18    rmarkdown_2.6    labeling_0.3     splines_4.0.0   
[21] munsell_0.5.0    compiler_4.0.0   httpuv_1.5.2     modelr_0.1.7    
[25] xfun_0.19        pkgconfig_2.0.3  mgcv_1.8-31      htmltools_0.5.0 
[29] tidyselect_1.1.0 fansi_0.4.1      crayon_1.3.4     dbplyr_1.4.3    
[33] withr_2.2.0      later_1.0.0      grid_4.0.0       nlme_3.1-147    
[37] jsonlite_1.6.1   gtable_0.3.0     lifecycle_0.2.0  DBI_1.1.0       
[41] git2r_0.27.1     magrittr_1.5     scales_1.1.1     cli_2.0.2       
[45] stringi_1.4.6    farver_2.0.3     fs_1.4.1         promises_1.1.0  
[49] xml2_1.3.2       ellipsis_0.3.0   generics_0.0.2   vctrs_0.3.0     
[53] tools_4.0.0      glue_1.4.1       hms_0.5.3        yaml_2.2.1      
[57] colorspace_1.4-1 rvest_0.3.5      knitr_1.28       haven_2.2.0