Last updated: 2020-11-13

Checks: 6 1

Knit directory: website/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20201030)

The command set.seed(20201030) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: ed31ccb

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version ed31ccb. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  figures/prisma.html

Unstaged changes:
    Modified:   .gitignore
    Modified:   analysis/LatestUpdates.Rmd
    Modified:   commands.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/LatestUpdates.Rmd) and HTML (docs/LatestUpdates.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html ed31ccb L-ENA 2020-11-06 Build site.
Rmd eadb69b L-ENA 2020-11-06 Updated at 2020-11-06 09:50:51
html eadb69b L-ENA 2020-11-06 Updated at 2020-11-06 09:50:51
html a34fbc8 L-ENA 2020-10-30 Build site.
html b5505f2 L-ENA 2020-10-30 Build site.
html 93bdfca L-ENA 2020-10-30 Build site.
Rmd f625ab4 L-ENA 2020-10-30 added interactive plots
html f625ab4 L-ENA 2020-10-30 added interactive plots
html 7bafffe L-ENA 2020-10-30 Build site.
Rmd ef0354d L-ENA 2020-10-30 add
html ef0354d L-ENA 2020-10-30 add
html 26e1d9b L-ENA 2020-10-30 Build site.
html c16ec66 L-ENA 2020-10-30 Build site.
html c86cb34 L-ENA 2020-10-30 Build site.
Rmd 69afb05 L-ENA 2020-10-30 license updated

Latest published version: [placeholder]

This page contains the latest updates to this living review. We have screened and continued the work on this review, a status update and resources are given below.

Screening status

Number of abstracts screened since the last publication: 0

Number of full texts screened since the last publication: 0

Number of papers included since the last publication: 0

Last updated: 02-11-2020 (PubMed, arXiv); 02-11-2020 (DBLP)

PRISMA 2020 flow diagram

This is the PRISMA diagram for the first version of the living review.

The PRISMA diagrams were created using Haddaway, NR. 2020. SRflowdiagram: flow charts for systematic reviews and maps. doi: 10.5281/zenodo.4134795

Latest figures

These figures represent pre-update, and therefore unpublished, content from the living review.


sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19041)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5      rstudioapi_0.13 whisker_0.4     knitr_1.30     
 [5] magrittr_1.5    R6_2.5.0        rlang_0.4.8     stringr_1.4.0  
 [9] tools_4.0.3     xfun_0.19       git2r_0.27.1    htmltools_0.5.0
[13] ellipsis_0.3.1  rprojroot_1.3-2 yaml_2.2.1      digest_0.6.27  
[17] tibble_3.0.4    lifecycle_0.2.0 crayon_1.3.4    later_1.1.0.1  
[21] vctrs_0.3.4     promises_1.1.1  fs_1.5.0        glue_1.4.2     
[25] evaluate_0.14   rmarkdown_2.5   stringi_1.5.3   compiler_4.0.3 
[29] pillar_1.4.6    backports_1.2.0 httpuv_1.5.4    pkgconfig_2.0.3