Last updated: 2024-06-19
Checks: 2 0
Knit directory:
locust-comparative-genomics/
This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 5913857. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish or
wflow_git_commit). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .DS_Store
Ignored: .RData
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: analysis/.DS_Store
Ignored: analysis/.Rhistory
Ignored: data/.DS_Store
Ignored: data/.Rhistory
Ignored: data/DEseq2_SAMER_SAMER_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SAMER_SAMER_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SAMER_SGREG_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SAMER_SGREG_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCANC_SCANC_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCANC_SCANC_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCANC_SGREG_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCANC_SGREG_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCUBE_SCUBE_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCUBE_SCUBE_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCUBE_SGREG_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SCUBE_SGREG_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SGREG_SGREG_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SGREG_SGREG_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SNITE_SGREG_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SNITE_SGREG_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SNITE_SNITE_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SNITE_SNITE_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SPICE_SGREG_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SPICE_SGREG_THORAX_STARnew_features/.DS_Store
Ignored: data/DEseq2_SPICE_SPICE_HEAD_STARnew_features/.DS_Store
Ignored: data/DEseq2_SPICE_SPICE_THORAX_STARnew_features/.DS_Store
Ignored: data/americana/.DS_Store
Ignored: data/americana/deg_counts/.DS_Store
Ignored: data/americana/deg_counts/STAR/.DS_Store
Ignored: data/americana/deg_counts/STAR/americana/.DS_Store
Ignored: data/americana/deg_counts/STAR/americana/featurecounts/.DS_Store
Ignored: data/americana/deg_counts/STAR/gregaria/.DS_Store
Ignored: data/americana/deg_counts/STAR/gregaria/featurecounts/.DS_Store
Ignored: data/americana/deg_counts/STAR_newparams/.DS_Store
Ignored: data/americana/deg_counts/STAR_newparams/americana/.DS_Store
Ignored: data/americana/deg_counts/STAR_newparams/americana/featurecounts/.DS_Store
Ignored: data/americana/deg_counts/STAR_newparams/gregaria/.DS_Store
Ignored: data/americana/deg_counts/STAR_newparams/gregaria/featurecounts/.DS_Store
Ignored: data/cancellata/.DS_Store
Ignored: data/cancellata/deg_counts/.DS_Store
Ignored: data/cancellata/deg_counts/STAR/.DS_Store
Ignored: data/cancellata/deg_counts/STAR_newparams/.DS_Store
Ignored: data/cubense/.DS_Store
Ignored: data/cubense/deg_counts/.DS_Store
Ignored: data/cubense/deg_counts/STAR/.DS_Store
Ignored: data/cubense/deg_counts/STAR/cubense/.DS_Store
Ignored: data/cubense/deg_counts/STAR/cubense/featurecounts/
Ignored: data/cubense/deg_counts/STAR/gregaria/
Ignored: data/cubense/deg_counts/STAR_newparams/.DS_Store
Ignored: data/cubense/deg_counts/STAR_newparams/cubense/.DS_Store
Ignored: data/cubense/deg_counts/STAR_newparams/gregaria/.DS_Store
Ignored: data/gregaria/.DS_Store
Ignored: data/gregaria/deg_counts/.DS_Store
Ignored: data/gregaria/deg_counts/STAR/.DS_Store
Ignored: data/gregaria/deg_counts/STAR_newparams/.DS_Store
Ignored: data/gregaria/deg_counts/STAR_newparams/gregaria/.DS_Store
Ignored: data/gregaria/deg_counts/STAR_newparams/gregaria/featurecounts/.DS_Store
Ignored: data/list/.DS_Store
Ignored: data/metadata/.DS_Store
Ignored: data/nitens/.DS_Store
Ignored: data/nitens/deg_counts/.DS_Store
Ignored: data/nitens/deg_counts/STAR_newparams/.DS_Store
Ignored: data/nitens/deg_counts/STAR_newparams/gregaria/.DS_Store
Ignored: data/nitens/deg_counts/STAR_newparams/gregaria/featurecounts/.DS_Store
Ignored: data/nitens/deg_counts/STAR_newparams/nitens/.DS_Store
Ignored: data/nitens/deg_counts/STAR_newparams/nitens/featurecounts/.DS_Store
Ignored: data/piceifrons/.DS_Store
Ignored: data/piceifrons/deg_counts/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR/gregaria/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR/gregaria/featurecounts/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR/piceifrons/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR/piceifrons/featurecounts/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR_newparams/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR_newparams/gregaria/.DS_Store
Ignored: data/piceifrons/deg_counts/STAR_newparams/piceifrons/.DS_Store
Ignored: figures/
Ignored: tables/
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/1_team-science.Rmd) and
HTML (docs/1_team-science.html) files. If you’ve configured
a remote Git repository (see ?wflow_git_remote), click on
the hyperlinks in the table below to view the files as they were in that
past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | 4246194 | Maeva A. TECHER | 2024-01-29 | Build site. |
| html | f701a01 | Maeva A. TECHER | 2024-01-29 | reupdate |
| html | b8c43a8 | Maeva A. TECHER | 2024-01-24 | Build site. |
| html | 1b09cbe | Maeva A. TECHER | 2024-01-24 | remove |
| html | 2aa74b3 | Maeva A. TECHER | 2024-01-24 | Build site. |
| Rmd | f8c6b70 | Maeva A. TECHER | 2024-01-24 | wflow_publish("analysis/1_team-science.Rmd") |
| html | 9cf4d78 | Maeva A. TECHER | 2023-12-18 | Build site. |
| Rmd | 53877fa | Maeva A. TECHER | 2023-12-18 | add pages |
Hojun, Greg, Erez/Olga and Anna (in no particular order)
Authors and Affiliations (arbitrary order)
All should have the BPRI as an affiliation.
USDA, Agricultural Research Service, Daniel K Inouye U.S. Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, 64 Nowelo Street, Hilo, HI 96720, USA
USDA, Agricultural Research Service, Daniel K Inouye U.S. Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, 64 Nowelo Street, Hilo, HI 96720, USA
USDA, Agricultural Research Service, Daniel K Inouye U.S. Pacific Basin Agricultural Research Center, Tropical Pest Genetics and Molecular Biology Research Unit, 64 Nowelo Street, Hilo, HI 96720, USA
Oak Ridge Institute for Science and Education, P.O. Box 117, Oak Ridge, TN 37831, USA
USDA, Agricultural Research Service, Jamie Whitten Delta States Research Center, Genomics and Bioinformatics Research Unit, 141 Experiment Station Road, Stoneville, MS 38776, USA
USDA, Agricultural Research Service, Beltsville Agricultural Research Center, Bee Research Laboratory, 10300 Baltimore Avenue, Beltsville, MD 20705, USA
Department of Biological Sciences, Colorado Mesa University, Grand Junction, CO, 81051, USA
USDA, Agricultural Research Service, Beltsville Agricultural Research Center, Bee Research Laboratory, 10300 Baltimore Avenue, Beltsville, MD 20705, USA
USDA-ARS, National Agricultural Library, 10301 Baltimore Ave, Beltsville, MD 20705
Department of Entomology, Texas A&M University, College Station, TX, 77843-2475, USA
Department of Entomology, Texas A&M University, College Station, TX, 77843-2475, USA
Department of Entomology, Texas A&M University, College Station, TX, 77843-2475, USA
Department of Entomology, Texas A&M University, College Station, TX, 77843-2475, USA
Ecology and Evolutionary Biology Interdisciplinary Doctoral Program, Texas A&M University, College Station, TX, 77843-2475, USA
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA
Department of Neuroscience, Baylor College of Medicine, Houston, TX, 77030, USA
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA
Department of Neuroscience, Baylor College of Medicine, Houston, TX, 77030, USA
Mcguire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History University of Florida, Gainesville, FL 32611-2710, USA
#Authors contribution
| Name | Conceptualization | Sampling | Data generation | Data analysis | Data curation | Visualization | Writing | Supervision | Admin & Funding |
|---|---|---|---|---|---|---|---|---|---|
| Author1 | X | X | X | X | X | X | X |