3. Primary_Natural_Killer_cells_from_peripheral_blood_gene2gene.mat
: gene regulatory network
$ md5sum Primary_Natural_Killer_cells_from_peripheral_blood_gene2gene.mat
35ac724b86f7777d87116cc48166caa2 Primary_Natural_Killer_cells_from_peripheral_blood_gene2gene.mat
$ du -sh Primary_Natural_Killer_cells_from_peripheral_blood_gene2gene.mat
1.7M Primary_Natural_Killer_cells_from_peripheral_blood_gene2gene.mat
>> gene2gene = matfile('Primary_Natural_Killer_cells_from_peripheral_blood_gene2gene.mat');
>> gene2gene
matlab.io.MatFile
Properties:
Properties.Source: 'Primary_Natural_Killer_cells_from_peripheral_blood_gene2gene.mat'
Properties.Writable: false
colid: [110733x1 int32]
numgene: [1x1 int32]
rowid: [110733x1 int32]
val: [110733x1 double]
>> colid=gene2gene.colid; rowid=gene2gene.rowid; val=gene2gene.val;
>> [sum(colid==rowid) unique(val(colid==rowid))]
18334 1
>> colid=gene2gene.colid; rowid=gene2gene.rowid;
>> [length(unique(colid(colid ~= rowid))) length(unique(rowid(colid ~= rowid)))]
3105 376
$ squeue -u xiangzhu
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
62554249_107 owners ibd2015_ xiangzhu R 0:32 1 sh02-17n12
62554249_108 owners ibd2015_ xiangzhu R 0:32 1 sh02-17n12
62554249_109 owners ibd2015_ xiangzhu R 0:32 1 sh01-28n08
62554249_110 owners ibd2015_ xiangzhu R 0:32 1 sh01-17n18
62554249_111 owners ibd2015_ xiangzhu R 0:32 1 sh01-26n33
62554249_112 owners ibd2015_ xiangzhu R 0:32 1 sh01-27n30
Start at Mar 2, 2020, 3:04 PM.
End at Mar 2, 2020, 11:37 PM.
Job ID: 62554249
Array Job ID: 62554249_125
Cluster: sherlock
User/Group: xiangzhu/whwong
State: COMPLETED (exit code 0)
Nodes: 1
Cores per node: 8
CPU Utilized: 1-03:08:31
CPU Efficiency: 74.54% of 1-12:24:40 core-walltime
Job Wall-clock time: 04:33:05
Memory Utilized: 26.58 GB
Memory Efficiency: 85.06% of 31.25 GB