CSNA_workflow

Last updated: 2019-09-22

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Knit directory: csna_workflow/

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Unstaged changes:
    Modified:   README.md
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    Modified:   analysis/_site.yml

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These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File	Version	Author	Date	Message
Rmd	ed97ced	xhyuo	2019-09-22	wflow_publish(c(“analysis/index.Rmd”, “analysis/about.Rmd”,
Rmd	898ff80	xhyuo	2019-09-22	Start workflowr project.

CSNA_workflow

Hao He

1 Data transformation from Finalreport.txt to qtl2 for nine batches of Jackson_Lab_Bubier

2 Grab intensities from GeneSeek FinalReport.txt files convert them to a single big data frame

3 First time to calculate genoprobs, maxmarg, crossover, errorlod, snpg for the qc diagnositics

4 Genotype diagnostics for diversity outbred mice of nine batches

5 After QC, genotype diagnostics

6 Calculation of the genoprobs after qc and do interpolatino to 69K grid

7 Plot the recombination block size and founder props across all generations

8 GCTA heritability

9 qtl mapping