Construction of Genomic, Phenomic, Environment, Weather, and Interaction Kernels

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Last updated: 2026-03-27

Checks: 6 1

Knit directory: Integrating-nir-genomic-kernel/

This reproducible R Markdown analysis was created with workflowr (version 1.7.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20250829)

The command set.seed(20250829) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: 0dd903c

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 0dd903c. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

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    Ignored:    output/variance_components/rep_10/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_10/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_10/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_10/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_10/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_10/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_10/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_10/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_10/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_10/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_10/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_10/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_10/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_10/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_10/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_10/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_10/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_10/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_10/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_11/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_11/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_12/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_12/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_13/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_13/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_14/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_14/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_15/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_15/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_16/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_16/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_17/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_17/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_18/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_18/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_19/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_19/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_2/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_2/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_20/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_20/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_3/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_3/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_4/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_4/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_5/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_5/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_6/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_6/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_7/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_7/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta14/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta14/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta14/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta14/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta14/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta14/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta14/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta15/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_PGKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_PGKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_PGK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta15/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta16/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta16/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta16/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta16/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta16/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta16/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta16/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta17/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta17/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta17/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta17/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta17/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta17/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta17/KWvarE.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYmu.dat
    Ignored:    output/variance_components/rep_8/Eta18/GYvarE.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_GAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_GAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_GAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_PAKE_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_PAKW_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_PAK_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWmu.dat
    Ignored:    output/variance_components/rep_8/Eta18/KWvarE.dat
    Ignored:    output/variance_components/rep_9/Eta10/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta10/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/GYmu.dat
    Ignored:    output/variance_components/rep_9/Eta10/GYvarE.dat
    Ignored:    output/variance_components/rep_9/Eta10/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta10/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta10/KWmu.dat
    Ignored:    output/variance_components/rep_9/Eta10/KWvarE.dat
    Ignored:    output/variance_components/rep_9/Eta11/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta11/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/GYmu.dat
    Ignored:    output/variance_components/rep_9/Eta11/GYvarE.dat
    Ignored:    output/variance_components/rep_9/Eta11/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta11/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta11/KWmu.dat
    Ignored:    output/variance_components/rep_9/Eta11/KWvarE.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_GE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_GW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_G_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_PE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_PW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_P_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYmu.dat
    Ignored:    output/variance_components/rep_9/Eta12/GYvarE.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_GE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_GW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_G_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_PE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_PW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_P_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWmu.dat
    Ignored:    output/variance_components/rep_9/Eta12/KWvarE.dat
    Ignored:    output/variance_components/rep_9/Eta13/GYETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta13/GYETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/GYETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/GYETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/GYETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/GYmu.dat
    Ignored:    output/variance_components/rep_9/Eta13/GYvarE.dat
    Ignored:    output/variance_components/rep_9/Eta13/KWETA_E_varB.dat
    Ignored:    output/variance_components/rep_9/Eta13/KWETA_GGKE_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/KWETA_GGKW_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/KWETA_GGK_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/KWETA_W_varU.dat
    Ignored:    output/variance_components/rep_9/Eta13/KWmu.dat
    Ignored:    output/variance_components/rep_9/Eta13/KWvarE.dat
    Ignored:    output/variance_components/rep_9/Eta14/GYETA_E_varB.dat
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---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/matrizes.Rmd) and HTML (docs/matrizes.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
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---

1. Introduction

This tutorial documents how the project constructs the core kernels used in the genomic prediction analyses. The goal is not simply to read files and calculate matrices. The goal is to transform heterogeneous information sources into aligned scientific objects that can be used in multi-environment prediction models.

The script integrates four data layers:

1. Phenotypic records (Pheno): grain yield (GY) and kernel weight (KW) by genotype and environment.
2. Genomic markers (Geno): SNP markers processed in numerical format.
3. NIR spectra (NIR): phenomic measurements used to build a spectral similarity kernel.
4. Weather-derived covariates (W): meteorological descriptors generated in the climate tutorial.

The final outputs of this script are the matrices used later in the prediction models:

• Linear kernels: ZG, ZP, ZEZE, ZW
• Interaction kernels: ZGZE, ZPZE, ZGZW, ZPZW
• Nonlinear Gaussian kernels: GGK, PGK, GGKE, PGKE, GGKW, PGKW
• Nonlinear arc-cosine kernels: GAK, PAK, GAKE, PAKE, GAKW, PAKW

In the reduced set of 18 final models, the weather kernel (ZW) and its interaction terms are used mainly in models M10-M18. The earlier models (M01-M09) rely on the categorical environment effect (E) together with genomic and/or phenomic kernels, but do not include the weather kernel.

A key practical objective of this tutorial is to guarantee that all matrices are constructed in the same observation order. If the kernels are not perfectly aligned, the downstream prediction analyses become invalid.

2. R environment and dependencies

We first load the packages required for data handling, kernel construction, visualization, and memory management.

• tidyverse: data wrangling and plotting.
• data.table: fast reading of large files.
• BGLR: downstream Bayesian genomic prediction framework.
• parallel and doParallel: support for computationally intensive tasks.
• MASS: additional statistical utilities.
• patchwork: multi-panel figure composition for diagnostic plots.

suppressPackageStartupMessages({
  library(tidyverse)
  library(data.table)
  library(BGLR)
  library(parallel)
  library(doParallel)
  library(MASS)
  library(gridExtra)
  library(grid)
  library(patchwork)
})

dir.create("output/Matrizes", recursive = TRUE, showWarnings = FALSE)
dir.create("output/Matrizes/figures", recursive = TRUE, showWarnings = FALSE)

2.1 A note on the coding style used in this tutorial

In this tutorial, we avoid small convenience helpers for plotting and checking matrices. Instead, the code is written in a more explicit and linear way. This makes the script longer, but it also makes each operation easier to follow for readers who are still learning R and matrix-based modeling workflows.

The only functions kept later in the script are the mathematical functions strictly required to estimate the Gaussian and arc-cosine kernels. Those functions are part of the modeling procedure itself, not just programming shortcuts.

3. Load the raw data

This section reads the raw inputs used in the kernel construction pipeline. At this stage, the goal is only to import the data and inspect the basic structure of each source.

3.1 Load NIR records and phenotypes

The NIR.csv file contains identifiers, environments, phenotypic traits, and the spectral bands used later to build the phenomic kernel.

NIR <- fread("data/NIR.csv") %>% as.data.frame()

head(NIR[, 1:7])

unique(NIR$Env)

[1] "CS11_WS" "CS11_WW" "CS12_WS" "CS12_WW"

3.2 Load genomic markers

The genotype file contains one row per genotype and one column per marker. The first column (taxa) is the genotype identifier used to align genomic and phenotypic information.

Geno <- fread("data/GAPIT.Genotype.Numerical.txt") %>% as.data.frame()

head(Geno[, 1:5])

3.3 Build the phenotype table used downstream

The modeling scripts later require a clean phenotype table containing only the identifiers and the target traits. We extract those columns directly from the NIR file to guarantee that the phenotype table remains synchronized with the observation-level spectral records.

We also create an observation identifier (ObsID) combining environment and genotype. This is useful because the same genotype can appear in more than one environment, and unique observation labels greatly improve traceability and alignment checks.

Pheno <- NIR %>%
  dplyr::select(Pedigree, Env, GY, KW) %>%
  arrange(Env, Pedigree) %>%
  mutate(ObsID = paste(Env, Pedigree, sep = "__"))

head(Pheno)

4. Harmonize genotype IDs across data sources

This is a critical validation step. The genomic file and the NIR/phenotypic file must refer to the same genotypes. If the IDs are not harmonized before matrix construction, every downstream kernel will be misaligned.

Pedigree <- intersect(Geno$taxa, NIR$Pedigree)

NIR <- NIR[NIR$Pedigree %in% Pedigree, ] %>%
  arrange(Env, Pedigree) %>%
  mutate(ObsID = paste(Env, Pedigree, sep = "__"))

Geno <- Geno[Geno$taxa %in% Pedigree, ] %>%
  arrange(taxa)

Pheno <- Pheno[Pheno$Pedigree %in% Pedigree, ] %>%
  arrange(Env, Pedigree) %>%
  mutate(ObsID = paste(Env, Pedigree, sep = "__"))

cat("Shared genotypes in NIR :", length(unique(NIR$Pedigree)), "\n")

Shared genotypes in NIR : 329 

cat("Shared genotypes in Geno:", nrow(Geno), "\n")

Shared genotypes in Geno: 329 

cat("Shared genotypes in Pheno:", length(unique(Pheno$Pedigree)), "\n")

Shared genotypes in Pheno: 329 

5. Split NIR observations by environment

The study has four environments:

• CS11_WS
• CS11_WW
• CS12_WS
• CS12_WW

The kernel construction later uses environment-specific blocks. For that reason, we separate the NIR observations into four environment-specific data frames while preserving the observation identifiers.

a <- NIR %>% filter(Env == "CS11_WS") %>% arrange(Pedigree)
b <- NIR %>% filter(Env == "CS11_WW") %>% arrange(Pedigree)
c <- NIR %>% filter(Env == "CS12_WS") %>% arrange(Pedigree)
d <- NIR %>% filter(Env == "CS12_WW") %>% arrange(Pedigree)

rownames(a) <- a$ObsID
rownames(b) <- b$ObsID
rownames(c) <- c$ObsID
rownames(d) <- d$ObsID

5.1 Identify genotypes observed in all environments

This object is informative for balanced-data checks and for interpreting the overlap across trials.

Pedigree_communs <- Reduce(
  intersect,
  list(Geno$taxa, a$Pedigree, b$Pedigree, c$Pedigree, d$Pedigree)
)

length(Pedigree_communs)

[1] 146

6. Build the linear genomic kernel (K_G stored as ZG)

The genomic kernel measures similarity among observations based on SNP markers.

The legacy pipeline used in this project standardizes marker values within each environment-specific observation block before stacking the data. Although this is not the only possible strategy, we preserve it here to maintain compatibility with the downstream analyses already developed for the article.

The practical steps are:

1. Sort the genotype matrix and remove the ID column.
2. Subset the genotype matrix according to the genotypes observed in each environment.
3. Standardize markers within each block.
4. Stack the environment-specific matrices in the same order used by the observation table.
5. Compute the linear kernel by the cross-product of the standardized marker matrix.

Geno <- Geno[order(Geno$taxa), ]
rownames(Geno) <- Geno$taxa
Geno <- Geno[, -1, drop = FALSE]

Geno.a <- scale(Geno[a$Pedigree, , drop = FALSE], center = TRUE, scale = TRUE)
Geno.b <- scale(Geno[b$Pedigree, , drop = FALSE], center = TRUE, scale = TRUE)
Geno.c <- scale(Geno[c$Pedigree, , drop = FALSE], center = TRUE, scale = TRUE)
Geno.d <- scale(Geno[d$Pedigree, , drop = FALSE], center = TRUE, scale = TRUE)

rownames(Geno.a) <- a$ObsID
rownames(Geno.b) <- b$ObsID
rownames(Geno.c) <- c$ObsID
rownames(Geno.d) <- d$ObsID

Geno.all <- rbind(Geno.a, Geno.b, Geno.c, Geno.d)

ZG <- tcrossprod(as.matrix(Geno.all)) / ncol(Geno.all)
rownames(ZG) <- rownames(Geno.all)
colnames(ZG) <- rownames(Geno.all)

dim(ZG)

[1] 982 982

ZG[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188    1.081262206   -0.007936875     0.02849732   -0.01341945
CS11_WS__A214N  -0.007936875    1.106776982    -0.01406327    0.30335381
CS11_WS__A4415   0.028497322   -0.014063270     0.97459897   -0.01030808
CS11_WS__A632   -0.013419454    0.303353810    -0.01030808    0.81053742
CS11_WS__A634    0.010866216    0.518636190    -0.01225142    0.46287155
               CS11_WS__A634
CS11_WS__A188     0.01086622
CS11_WS__A214N    0.51863619
CS11_WS__A4415   -0.01225142
CS11_WS__A632     0.46287155
CS11_WS__A634     1.07224004

7. Build the linear phenomic kernel (K_P stored as ZP)

The phenomic kernel uses the NIR spectral bands. The same blockwise logic is used here to keep the observation order synchronized with the genomic, categorical environment, and weather kernels.

This kernel is useful because it summarizes spectral similarity among observations. At the same time, it should be interpreted with caution. NIR spectra can reflect strong physiological responses to the field conditions, so the phenomic kernel may capture part of the environmental signal in addition to genotype-related information.

# Identify spectral variables defensively: keep only numeric columns and remove
# metadata/trait columns that should not enter the phenomic kernel.
metadata_cols <- c("Pedigree", "Env", "GY", "KW", "ObsID")

nir_feature_cols <- setdiff(colnames(NIR), metadata_cols)
nir_feature_cols <- nir_feature_cols[
  vapply(NIR[, nir_feature_cols, drop = FALSE], is.numeric, logical(1))
]

if (length(nir_feature_cols) == 0) {
  stop("No numeric NIR feature columns were found after filtering metadata columns.")
}

excluded_non_numeric <- setdiff(setdiff(colnames(NIR), metadata_cols), nir_feature_cols)

cat("Number of NIR feature columns used in ZP:", length(nir_feature_cols), "\n")

Number of NIR feature columns used in ZP: 3112 

if (length(excluded_non_numeric) > 0) {
  cat("Excluded non-numeric columns:", paste(excluded_non_numeric, collapse = ", "), "\n")
}

Excluded non-numeric columns: interaction 

NIR.a <- scale(as.matrix(a[, nir_feature_cols, drop = FALSE]), center = TRUE, scale = TRUE)
NIR.b <- scale(as.matrix(b[, nir_feature_cols, drop = FALSE]), center = TRUE, scale = TRUE)
NIR.c <- scale(as.matrix(c[, nir_feature_cols, drop = FALSE]), center = TRUE, scale = TRUE)
NIR.d <- scale(as.matrix(d[, nir_feature_cols, drop = FALSE]), center = TRUE, scale = TRUE)

rownames(NIR.a) <- a$ObsID
rownames(NIR.b) <- b$ObsID
rownames(NIR.c) <- c$ObsID
rownames(NIR.d) <- d$ObsID

NIR.all <- rbind(NIR.a, NIR.b, NIR.c, NIR.d)

ZP <- tcrossprod(NIR.all) / ncol(NIR.all)
rownames(ZP) <- rownames(NIR.all)
colnames(ZP) <- rownames(NIR.all)

dim(ZP)

[1] 982 982

ZP[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      2.0689756     0.12794826    -0.96853101    1.20893618
CS11_WS__A214N     0.1279483     0.01220063    -0.05604141    0.06624954
CS11_WS__A4415    -0.9685310    -0.05604141     0.46231635   -0.56784147
CS11_WS__A632      1.2089362     0.06624954    -0.56784147    0.82350392
CS11_WS__A634      0.6505185     0.03393302    -0.29814444    0.52022985
               CS11_WS__A634
CS11_WS__A188     0.65051847
CS11_WS__A214N    0.03393302
CS11_WS__A4415   -0.29814444
CS11_WS__A632     0.52022985
CS11_WS__A634     0.38209739

8. Build the categorical environmental kernel (K_E)

The simplest environmental representation treats each environment as a categorical factor. We first build the incidence matrix ZE, then convert it into a kernel (ZEZE) through the cross-product.

This kernel assigns full environmental similarity to observations from the same environment and zero similarity to observations from different environments. In the final models, ZEZE represents the categorical environment effect. It is not the same as the weather kernel. In practical terms, ZEZE keeps the distinction among the four macro-environments, whereas ZW later describes similarity among observations based on meteorological covariates.

Pheno <- Pheno %>% arrange(match(ObsID, rownames(ZG)))

ZE <- model.matrix(~ as.factor(Pheno$Env) - 1)
rownames(ZE) <- Pheno$ObsID
colnames(ZE) <- gsub("^as.factor\\(Pheno\\$Env\\)", "", colnames(ZE))

ZEZE <- tcrossprod(ZE)
rownames(ZEZE) <- rownames(ZE)
colnames(ZEZE) <- rownames(ZE)

cat("Dimensions of ZE   :", dim(ZE), "\n")

Dimensions of ZE   : 982 4 

cat("Dimensions of ZEZE :", dim(ZEZE), "\n")

Dimensions of ZEZE : 982 982 

ZEZE[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188              1              1              1             1
CS11_WS__A214N             1              1              1             1
CS11_WS__A4415             1              1              1             1
CS11_WS__A632              1              1              1             1
CS11_WS__A634              1              1              1             1
               CS11_WS__A634
CS11_WS__A188              1
CS11_WS__A214N             1
CS11_WS__A4415             1
CS11_WS__A632              1
CS11_WS__A634              1

9. Build the weather kernel (K_W stored as ZW)

The weather kernel uses the climate outputs created in the climate_data tutorial. The updated climate workflow now exports two files:

1. environmental_covariates.csv: one row per year with aggregated weather summaries.
2. environmental_covariates_expanded.csv: daily records linked to those annual summaries.

This script uses both files:

• The annual file provides the weather-derived summary covariates.
• The expanded file provides the daily weather trajectories used to describe the within-season weather signature of each year.

In the final reduced pipeline, ZW is used mainly in models M10-M18, together with interactions such as GW, PW, GGKW, PGKW, GAKW, and PAKW. The weather kernel should therefore be interpreted as an additional source of meteorological similarity. It does not replace the categorical environment effect represented by ZEZE.

9.1 Load climate files

annual_ec_file <- "output/climate_results/environmental_covariates.csv"
expanded_ec_file <- "output/climate_results/environmental_covariates_expanded.csv"

if (!file.exists(annual_ec_file)) {
  stop("The file 'output/climate_results/environmental_covariates.csv' was not found. Run climate_data.Rmd first.")
}

if (!file.exists(expanded_ec_file)) {
  stop("The file 'output/climate_results/environmental_covariates_expanded.csv' was not found. Run climate_data.Rmd first.")
}

ECs_annual <- read.csv(annual_ec_file)
ECs_expanded <- read.csv(expanded_ec_file)

annual_cols <- c(
  "TMAX_AVG", "TMIN_AVG", "GDD_CUM", "HEAT_STRESS_DAYS",
  "PRECTOT", "DRY_DAYS", "RH_AVG", "WS2M_AVG", "RAD_CUM",
  "T_AVG", "DTR_AVG", "COLD_STRESS_DAYS", "RAINY_DAYS",
  "PREC_INTENSITY", "LOW_RH_DAYS", "VPD_AVG", "VPD_STRESS_DAYS"
)

# Keep only true daily weather variables. Exclude identifiers, date encodings,
# coordinate fields, and any annual summary columns that may also be present in
# the expanded file.
daily_id_cols <- c(
  "year", "Year", "YEAR",
  "date", "Date",
  "YYYYMMDD", "MMDD", "DOY",
  "month", "Month", "MM",
  "day", "DD",
  "LON", "LAT"
)
candidate_daily_cols <- setdiff(
  colnames(ECs_expanded),
  c(daily_id_cols, annual_cols)
)

daily_cols <- candidate_daily_cols[
  vapply(ECs_expanded[, candidate_daily_cols, drop = FALSE], is.numeric, logical(1))
]

excluded_daily_cols <- setdiff(candidate_daily_cols, daily_cols)

if (length(daily_cols) == 0) {
  stop("No numeric daily climate variables were found in environmental_covariates_expanded.csv.")
}

cat("Number of daily climate variables used in ZW:", length(daily_cols), "\n")

Number of daily climate variables used in ZW: 12 

if (length(excluded_daily_cols) > 0) {
  cat("Excluded non-climatic or non-numeric columns:", paste(excluded_daily_cols, collapse = ", "), "\n")
}

ECs_annual <- ECs_annual %>%
  mutate(year = as.integer(year)) %>%
  dplyr::select(year, all_of(annual_cols))

ECs_expanded <- ECs_expanded %>%
  mutate(
    year = as.integer(year),
    date = as.character(date)
  )

9.2 Standardize annual summaries and daily trajectories

The purpose of this step is to place heterogeneous environmental variables on a comparable scale before kernel construction.

annual_scaled <- ECs_annual %>%
  dplyr::select(all_of(annual_cols)) %>%
  scale(center = TRUE, scale = TRUE) %>%
  as.data.frame()

annual_scaled <- bind_cols(
  year = ECs_annual$year,
  annual_scaled
)

daily_scaled <- ECs_expanded %>%
  dplyr::select(year, date, all_of(daily_cols)) %>%
  group_by(year) %>%
  mutate(across(all_of(daily_cols), ~ as.numeric(scale(.x, center = TRUE, scale = TRUE)))) %>%
  ungroup()

9.3 Create year-specific climatic signatures

For each year, we transform the daily weather trajectories into a single wide-row signature. This gives each year a reproducible vector representing its within-season weather profile.

daily_signature_2011 <- daily_scaled %>%
  filter(year == 2011) %>%
  dplyr::select(date, all_of(daily_cols)) %>%
  pivot_longer(cols = -date, names_to = "variable", values_to = "value") %>%
  mutate(signature_col = paste(variable, date, sep = "__")) %>%
  dplyr::select(signature_col, value) %>%
  pivot_wider(names_from = signature_col, values_from = value)

daily_signature_2012 <- daily_scaled %>%
  filter(year == 2012) %>%
  dplyr::select(date, all_of(daily_cols)) %>%
  pivot_longer(cols = -date, names_to = "variable", values_to = "value") %>%
  mutate(signature_col = paste(variable, date, sep = "__")) %>%
  dplyr::select(signature_col, value) %>%
  pivot_wider(names_from = signature_col, values_from = value)

annual_signature_2011 <- annual_scaled %>%
  filter(year == 2011) %>%
  dplyr::select(-year)

annual_signature_2012 <- annual_scaled %>%
  filter(year == 2012) %>%
  dplyr::select(-year)

9.4 Build the observation-level W matrix

Each observation inherits the climatic signature of the year associated with its environment. The 2011 environments receive the 2011 daily and annual signatures; the 2012 environments receive the 2012 signatures. Missing year-specific blocks are filled with NA and later replaced with zero so that the final matrix can be used in a cross-product.

ids_a <- a$ObsID
ids_b <- b$ObsID
ids_c <- c$ObsID
ids_d <- d$ObsID

# Environments from 2011 receive the 2011 daily and annual signatures.
ECs.a_main_daily <- as.data.frame(daily_signature_2011[rep(1, length(ids_a)), , drop = FALSE])
rownames(ECs.a_main_daily) <- ids_a

ECs.a_other_daily <- as.data.frame(
  matrix(
    NA_real_,
    nrow = length(ids_a),
    ncol = ncol(daily_signature_2012),
    dimnames = list(ids_a, colnames(daily_signature_2012))
  )
)

ECs.a_annual <- as.data.frame(annual_signature_2011[rep(1, length(ids_a)), , drop = FALSE])
rownames(ECs.a_annual) <- ids_a

ECs.a <- cbind(ECs.a_main_daily, ECs.a_other_daily, ECs.a_annual)
ECs.a <- as.data.frame(ECs.a)
rownames(ECs.a) <- ids_a

ECs.b_main_daily <- as.data.frame(daily_signature_2011[rep(1, length(ids_b)), , drop = FALSE])
rownames(ECs.b_main_daily) <- ids_b

ECs.b_other_daily <- as.data.frame(
  matrix(
    NA_real_,
    nrow = length(ids_b),
    ncol = ncol(daily_signature_2012),
    dimnames = list(ids_b, colnames(daily_signature_2012))
  )
)

ECs.b_annual <- as.data.frame(annual_signature_2011[rep(1, length(ids_b)), , drop = FALSE])
rownames(ECs.b_annual) <- ids_b

ECs.b <- cbind(ECs.b_main_daily, ECs.b_other_daily, ECs.b_annual)
ECs.b <- as.data.frame(ECs.b)
rownames(ECs.b) <- ids_b

# Environments from 2012 receive the 2012 daily and annual signatures.
ECs.c_main_daily <- as.data.frame(daily_signature_2012[rep(1, length(ids_c)), , drop = FALSE])
rownames(ECs.c_main_daily) <- ids_c

ECs.c_other_daily <- as.data.frame(
  matrix(
    NA_real_,
    nrow = length(ids_c),
    ncol = ncol(daily_signature_2011),
    dimnames = list(ids_c, colnames(daily_signature_2011))
  )
)

ECs.c_annual <- as.data.frame(annual_signature_2012[rep(1, length(ids_c)), , drop = FALSE])
rownames(ECs.c_annual) <- ids_c

ECs.c <- cbind(ECs.c_main_daily, ECs.c_other_daily, ECs.c_annual)
ECs.c <- as.data.frame(ECs.c)
rownames(ECs.c) <- ids_c

ECs.d_main_daily <- as.data.frame(daily_signature_2012[rep(1, length(ids_d)), , drop = FALSE])
rownames(ECs.d_main_daily) <- ids_d

ECs.d_other_daily <- as.data.frame(
  matrix(
    NA_real_,
    nrow = length(ids_d),
    ncol = ncol(daily_signature_2011),
    dimnames = list(ids_d, colnames(daily_signature_2011))
  )
)

ECs.d_annual <- as.data.frame(annual_signature_2012[rep(1, length(ids_d)), , drop = FALSE])
rownames(ECs.d_annual) <- ids_d

ECs.d <- cbind(ECs.d_main_daily, ECs.d_other_daily, ECs.d_annual)
ECs.d <- as.data.frame(ECs.d)
rownames(ECs.d) <- ids_d

W <- rbind(ECs.a, ECs.b, ECs.c, ECs.d)
W <- as.data.frame(W)
rownames(W) <- c(ids_a, ids_b, ids_c, ids_d)

W <- W[Pheno$ObsID, , drop = FALSE]
W[is.na(W)] <- 0

ZW <- tcrossprod(as.matrix(W)) / ncol(W)
rownames(ZW) <- rownames(W)
colnames(ZW) <- rownames(W)

print(paste("Rows in W :", nrow(W)))

[1] "Rows in W : 982"

print(paste("Rows in ZG:", nrow(ZG)))

[1] "Rows in ZG: 982"

print(paste("ZW and ZG aligned:", identical(rownames(ZW), rownames(ZG))))

[1] "ZW and ZG aligned: TRUE"

print(paste("ZW and ZP aligned:", identical(rownames(ZW), rownames(ZP))))

[1] "ZW and ZP aligned: TRUE"

10. Check kernel dimensions and alignment

Before building interactions and nonlinear kernels, we summarize the main linear kernels. This table is useful both for quality control and for tutorial purposes.

reference_ids <- Pheno$ObsID

kernel_inventory_linear <- data.frame(
  kernel = c("ZG (genomic)", "ZP (phenomic/NIR)", "ZEZE (categorical environment effect)", "ZW (weather kernel)"),
  n_rows = c(nrow(ZG), nrow(ZP), nrow(ZEZE), nrow(ZW)),
  n_cols = c(ncol(ZG), ncol(ZP), ncol(ZEZE), ncol(ZW)),
  is_square = c(
    nrow(ZG) == ncol(ZG),
    nrow(ZP) == ncol(ZP),
    nrow(ZEZE) == ncol(ZEZE),
    nrow(ZW) == ncol(ZW)
  ),
  symmetric_names = c(
    identical(rownames(ZG), colnames(ZG)),
    identical(rownames(ZP), colnames(ZP)),
    identical(rownames(ZEZE), colnames(ZEZE)),
    identical(rownames(ZW), colnames(ZW))
  ),
  aligned_with_reference = c(
    identical(rownames(ZG), reference_ids),
    identical(rownames(ZP), reference_ids),
    identical(rownames(ZEZE), reference_ids),
    identical(rownames(ZW), reference_ids)
  )
)

kernel_inventory_linear %>%
  dplyr::mutate(
    n_rows = format(n_rows, big.mark = ","),
    n_cols = format(n_cols, big.mark = ",")
  ) %>%
  knitr::kable(
    caption = "Diagnostic summary of the main linear kernels.",
    align = "lcccccc"
  ) %>%
  kableExtra::kable_styling(
    bootstrap_options = c("striped", "hover", "condensed", "responsive"),
    full_width = FALSE,
    position = "left"
  ) %>%
  kableExtra::scroll_box(width = "100%", height = "260px")

Diagnostic summary of the main linear kernels.

kernel	n_rows	n_cols	is_square	symmetric_names	aligned_with_reference
ZG (genomic)	982	982	TRUE	TRUE	TRUE
ZP (phenomic/NIR)	982	982	TRUE	TRUE	TRUE
ZEZE (categorical environment effect)	982	982	TRUE	TRUE	TRUE
ZW (weather kernel)	982	982	TRUE	TRUE	TRUE

10.1 Spot-check selected observations

We inspect the same pedigree across matrices to verify that the stacked observation ordering remains coherent.

Geno.all[str_detect(rownames(Geno.all), "A188"), 1:5]

               S1_517642 S1_1000282 S1_1763292 S1_1763397 S1_2088440
CS11_WS__A188 -0.3244447 -0.4954853  0.4389794 -0.5765720 -0.2468038
CS11_WW__A188 -0.3071575 -0.5046434  0.4309819 -0.5753945 -0.2647288
CS12_WS__A188 -0.3068291 -0.4844154  0.4318786 -0.5471143 -0.2895119
CS12_WW__A188 -0.3277855 -0.4725198  0.4256480 -0.5603790 -0.2964903

W[str_detect(rownames(W), "A188"), 1:5]

NIR.all[str_detect(rownames(NIR.all), "A188"), 1:5]

              X3999.640137 X4001.568604 X4003.497071 X4005.425537 X4007.354004
CS11_WS__A188    -1.701604    -1.696844    -1.696844    -1.696283    -1.696195
CS11_WW__A188    -1.120197    -1.112012    -1.112012    -1.110283    -1.111711
CS12_WS__A188    -1.398754    -1.393058    -1.393058    -1.392220    -1.392757
CS12_WW__A188    -1.523355    -1.518600    -1.518600    -1.517747    -1.517932

10.2 Global alignment tests

All checks below should return TRUE.

all(rownames(ZW) == colnames(ZW))

[1] TRUE

all(rownames(ZG) == colnames(ZG))

[1] TRUE

all(rownames(ZP) == colnames(ZP))

[1] TRUE

all(rownames(ZW) == rownames(ZG))

[1] TRUE

all(rownames(ZW) == rownames(ZP))

[1] TRUE

all(colnames(ZW) == colnames(ZG))

[1] TRUE

all(colnames(ZW) == colnames(ZP))

[1] TRUE

10.3 Diagnostic figures will be generated after all kernel families are built

We postpone the final diagnostic figures until the Gaussian and arc-cosine kernels are available. This allows us to compare the linear and nonlinear representations within the genomic and phenomic spaces separately, which is more informative for the article than mixing weather and phenomic matrices in a single panel.

Even though ZW is not shown in the integrated heatmap figure, it remains a central object in the reduced pipeline because it supports the weather-augmented models (M10-M18) and their interaction terms.

11. Build interaction kernels

The interaction kernels are obtained through the Hadamard product (element-wise multiplication). This operation restricts genomic or phenomic similarity to the environmental context represented by ZEZE or ZW.

ZGZE <- ZG * ZEZE
ZPZE <- ZP * ZEZE
ZGZW <- ZG * ZW
ZPZW <- ZP * ZW

ZGZE[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188    1.081262206   -0.007936875     0.02849732   -0.01341945
CS11_WS__A214N  -0.007936875    1.106776982    -0.01406327    0.30335381
CS11_WS__A4415   0.028497322   -0.014063270     0.97459897   -0.01030808
CS11_WS__A632   -0.013419454    0.303353810    -0.01030808    0.81053742
CS11_WS__A634    0.010866216    0.518636190    -0.01225142    0.46287155
               CS11_WS__A634
CS11_WS__A188     0.01086622
CS11_WS__A214N    0.51863619
CS11_WS__A4415   -0.01225142
CS11_WS__A632     0.46287155
CS11_WS__A634     1.07224004

ZPZE[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      2.0689756     0.12794826    -0.96853101    1.20893618
CS11_WS__A214N     0.1279483     0.01220063    -0.05604141    0.06624954
CS11_WS__A4415    -0.9685310    -0.05604141     0.46231635   -0.56784147
CS11_WS__A632      1.2089362     0.06624954    -0.56784147    0.82350392
CS11_WS__A634      0.6505185     0.03393302    -0.29814444    0.52022985
               CS11_WS__A634
CS11_WS__A188     0.65051847
CS11_WS__A214N    0.03393302
CS11_WS__A4415   -0.29814444
CS11_WS__A632     0.52022985
CS11_WS__A634     0.38209739

ZGZW[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188    0.537113850   -0.003942620    0.014155962  -0.006666075
CS11_WS__A214N  -0.003942620    0.549788241   -0.006985889   0.150690121
CS11_WS__A4415   0.014155962   -0.006985889    0.484129201  -0.005120507
CS11_WS__A632   -0.006666075    0.150690121   -0.005120507   0.402632101
CS11_WS__A634    0.005397761    0.257631016   -0.006085858   0.229930093
               CS11_WS__A634
CS11_WS__A188    0.005397761
CS11_WS__A214N   0.257631016
CS11_WS__A4415  -0.006085858
CS11_WS__A632    0.229930093
CS11_WS__A634    0.532632117

ZPZW[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188     1.02775761    0.063557925    -0.48111496    0.60053552
CS11_WS__A214N    0.06355793    0.006060625    -0.02783841    0.03290927
CS11_WS__A4415   -0.48111496   -0.027838406     0.22965430   -0.28207359
CS11_WS__A632     0.60053552    0.032909266    -0.28207359    0.40907317
CS11_WS__A634     0.32314316    0.016856131    -0.14810238    0.25842266
               CS11_WS__A634
CS11_WS__A188     0.32314316
CS11_WS__A214N    0.01685613
CS11_WS__A4415   -0.14810238
CS11_WS__A632     0.25842266
CS11_WS__A634     0.18980576

saveRDS(ZGZE, "output/Matrizes/ZGZE.rds")
saveRDS(ZPZE, "output/Matrizes/ZPZE.rds")

12. Build nonlinear Gaussian kernels

The linear kernels above capture additive similarity. To explore nonlinear relationships, we also build Gaussian kernels for the genomic and phenomic spaces.

12.1 Core mathematical function for the Gaussian kernel

The next function is kept because it is part of the Gaussian kernel estimation itself. We use it to optimize the bandwidth parameter by maximizing the marginal likelihood.

margh.fun <- function(theta, y, D, q, nu = 0.0001, Sc = 0.0001,
                      nuh = NULL, Sch = NULL, prior = NULL) {
  h <- theta[1]
  phi <- theta[2]

  Kh <- exp(-h * D / q)
  eigenKh <- eigen(Kh)

  nr <- length(which(eigenKh$values > 1e-10))
  Uh <- eigenKh$vectors[, 1:nr, drop = FALSE]
  Sh <- eigenKh$values[1:nr]

  d <- t(Uh) %*% scale(y, scale = FALSE)

  lden <- -0.5 * sum(log(1 + phi * Sh)) -
    (nu + nr - 1) / 2 * log(Sc + sum(d^2 / (1 + phi * Sh)))

  if (!is.null(prior)) {
    lprior <- dgamma(h, nuh, Sch, log = TRUE)
  } else {
    lprior <- 0
  }

  return(-(lden + lprior))
}

12.2 Genomic Gaussian kernel (GGK)

We first compute genomic distances among unique genotypes, then project them into the observation space.

DG <- (as.matrix(dist(Geno)))^2
q05G <- quantile(DG, 0.05)

IDs <- as.character(Pheno$Pedigree)
DG <- DG[rownames(DG) %in% IDs, rownames(DG) %in% IDs, drop = FALSE]

IDs <- factor(IDs, levels = rownames(DG))
Z <- as.matrix(model.matrix(~ IDs - 1))
rownames(Z) <- Pheno$ObsID

ZD <- tcrossprod(Z, DG)
DG_proj <- tcrossprod(ZD, Z)

rownames(DG_proj) <- Pheno$ObsID
colnames(DG_proj) <- Pheno$ObsID

solG <- optim(
  c(1, 1),
  margh.fun,
  y = Pheno$GY,
  D = DG_proj,
  q = q05G,
  method = "L-BFGS-B",
  lower = c(0.05, 0.05),
  upper = c(6, 30)
)

hG <- solG$par[1]

GGK <- exp(-hG * DG_proj / q05G)
rownames(GGK) <- Pheno$ObsID
colnames(GGK) <- Pheno$ObsID

dim(GGK)

[1] 982 982

GGK[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      1.0000000      0.8252071      0.8404879     0.8422504
CS11_WS__A214N     0.8252071      1.0000000      0.8299100     0.8894593
CS11_WS__A4415     0.8404879      0.8299100      1.0000000     0.8504548
CS11_WS__A632      0.8422504      0.8894593      0.8504548     1.0000000
CS11_WS__A634      0.8292761      0.9060073      0.8327802     0.9159797
               CS11_WS__A634
CS11_WS__A188      0.8292761
CS11_WS__A214N     0.9060073
CS11_WS__A4415     0.8327802
CS11_WS__A632      0.9159797
CS11_WS__A634      1.0000000

12.3 Phenomic Gaussian kernel (PGK)

The phenomic Gaussian kernel uses Euclidean distances derived from the standardized NIR matrix.

As in the genomic Gaussian kernel, the optimization step in the current pipeline uses GY as the reference trait, and the resulting phenomic Gaussian kernel is then reused for both GY and KW.

DP <- (as.matrix(dist(NIR.all)))^2
q05P <- quantile(DP, 0.05)

IDs <- rownames(NIR.all)
DP <- DP[rownames(DP) %in% IDs, rownames(DP) %in% IDs, drop = FALSE]

Z <- as.matrix(model.matrix(~ IDs - 1))
rownames(Z) <- IDs

Z0 <- tcrossprod(Z, Z)
ZD <- tcrossprod(Z0, DP)
DP_proj <- tcrossprod(ZD, Z0)

rownames(DP_proj) <- IDs
colnames(DP_proj) <- IDs

solP <- optim(
  c(1, 1),
  margh.fun,
  y = Pheno$GY,
  D = DP_proj,
  q = q05P,
  method = "L-BFGS-B",
  lower = c(0.05, 0.05),
  upper = c(6, 30)
)

hP <- solP$par[1]

PGK <- exp(-hP * DP_proj / q05P)
rownames(PGK) <- rownames(NIR.all)
colnames(PGK) <- rownames(NIR.all)

dim(PGK)

[1] 982 982

PGK[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188   1.000000e+00   2.885682e-88  5.004588e-215  1.729865e-23
CS11_WS__A214N  2.885682e-88   1.000000e+00   7.360162e-29  1.881576e-34
CS11_WS__A4415 5.004588e-215   7.360162e-29   1.000000e+00 7.338163e-117
CS11_WS__A632   1.729865e-23   1.881576e-34  7.338163e-117  1.000000e+00
CS11_WS__A634   6.993408e-56   2.210252e-16   8.024658e-70  1.201900e-08
               CS11_WS__A634
CS11_WS__A188   6.993408e-56
CS11_WS__A214N  2.210252e-16
CS11_WS__A4415  8.024658e-70
CS11_WS__A632   1.201900e-08
CS11_WS__A634   1.000000e+00

12.4 Gaussian interaction kernels

GGKE <- GGK * ZEZE
PGKE <- PGK * ZEZE
GGKW <- GGK * ZW
PGKW <- PGK * ZW

13. Build nonlinear arc-cosine kernels

Arc-cosine kernels offer a second nonlinear representation. They are inspired by neural-network geometry and can capture hierarchical nonlinear patterns through recursive transformations.

In this tutorial we keep the mathematical functions below explicitly in the script because they define the arc-cosine kernel itself. Even though they are written as functions, they are part of the method rather than programming shortcuts.

13.1 Core mathematical functions for arc-cosine kernels

AK1.fun <- function(X) {
  cosalfa <- cor(t(X))
  cosalfa[cosalfa > 1] <- 1
  cosalfa[cosalfa < -1] <- -1
  angulo <- acos(cosalfa)
  mag <- sqrt(apply(X, 1, function(x) crossprod(x)))
  sxy <- tcrossprod(mag)
  AK1 <- (1 / pi) * sxy * (sin(angulo) + (pi - angulo) * cosalfa)
  AK1 <- AK1 / median(AK1, na.rm = TRUE)
  colnames(AK1) <- rownames(X)
  rownames(AK1) <- rownames(X)
  return(AK1)
}

marg.AK <- function(y, AK1, ml) {
  lden.fun <- function(phi, nr, Uh, Sh, d) {
    lden <- -0.5 * sum(log(1 + phi * Sh)) -
      (nr - 1) / 2 * log(sum(d^2 / (1 + phi * Sh)))
    return(-lden)
  }

  vero <- function(y, GC) {
    Kh <- GC
    eigenKh <- eigen(Kh)
    nr <- length(which(eigenKh$values > 1e-10))
    Uh <- eigenKh$vectors[, 1:nr, drop = FALSE]
    Sh <- eigenKh$values[1:nr]
    d <- t(Uh) %*% scale(y, scale = FALSE)
    sol <- optimize(lden.fun, nr = nr, Uh = Uh, Sh = Sh, d = d,
                    lower = 0.0005, upper = 200)
    phi <- sol[[1]]
    log.vero <- 0.5 * sum(log(1 + phi * Sh)) -
      (nr - 1) / 2 * log(sum(d^2 / (1 + phi * Sh)))
    return(log.vero)
  }

  GC <- AK1
  l <- 1
  GC2 <- GC
  vero1 <- vero(y = y, GC = GC2)
  m <- 0

  while (m == 0 && (l < ml)) {
    l <- l + 1
    GC <- AK.fun(AK1 = GC2, nl = 1)
    GC2 <- GC
    vero2 <- vero(y = y, GC = GC2)
    if (vero2 < vero1) m <- 1
    vero1 <- vero2
  }

  return(l - 1)
}

AK.fun <- function(AK1, nl) {
  n <- nrow(AK1)
  AK <- AK1
  for (l in 1:nl) {
    Aux <- tcrossprod(diag(AK))
    cosalfa <- AK * (Aux^(-1 / 2))
    cosa <- as.vector(cosalfa)
    cosa[cosa > 1] <- 1
    cosa[cosa < -1] <- -1
    angulo <- acos(cosa)
    angulo <- matrix(angulo, n, n)
    AK <- (1 / pi) * (Aux^(1 / 2)) * (sin(angulo) + (pi - angulo) * cos(angulo))
  }
  AK <- AK / median(AK, na.rm = TRUE)
  rownames(AK) <- rownames(AK1)
  colnames(AK) <- colnames(AK1)
  return(AK)
}

13.2 Genomic arc-cosine kernel (GAK)

The arc-cosine kernels follow the same practical rule adopted for the Gaussian kernels. In the current pipeline, the number of hidden layers is selected once using GY as the reference trait, and the resulting kernel is then reused in both trait analyses.

GAK1 <- AK1.fun(Geno)
dim(GAK1)

[1] 329 329

GAK1[1:5, 1:5]

           A188     A214N      A239     A4415      A554
A188  1.7685173 0.9584083 1.0038980 1.0262802 1.0011397
A214N 0.9584083 1.7942427 0.9810621 0.9950431 0.9604347
A239  1.0038980 0.9810621 1.7661590 1.0208122 1.0081672
A4415 1.0262802 0.9950431 1.0208122 1.7922089 1.0261770
A554  1.0011397 0.9604347 1.0081672 1.0261770 1.7531340

IDs <- as.character(Pheno$Pedigree)
GAK1 <- GAK1[rownames(GAK1) %in% IDs, rownames(GAK1) %in% IDs, drop = FALSE]

IDs <- factor(IDs, levels = rownames(GAK1))
Z <- as.matrix(model.matrix(~ IDs - 1))
rownames(Z) <- Pheno$ObsID
G <- tcrossprod(tcrossprod(Z, GAK1), Z)

Gl <- marg.AK(y = Pheno$GY, AK1 = G, ml = 50)

IDs.L <- factor(Pheno$Pedigree, levels = rownames(GAK1))
Z.L <- as.matrix(model.matrix(~ IDs.L - 1))
rownames(Z.L) <- Pheno$ObsID
G.L <- tcrossprod(tcrossprod(Z.L, GAK1), Z.L)

GAK <- AK.fun(AK1 = G.L, nl = Gl)
rownames(GAK) <- Pheno$ObsID
colnames(GAK) <- Pheno$ObsID

dim(GAK)

[1] 982 982

GAK[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      0.9990646      0.9946313      0.9942027     0.9960061
CS11_WS__A214N     0.9946313      1.0135973      1.0013290     1.0038101
CS11_WS__A4415     0.9942027      1.0013290      1.0124484     1.0027557
CS11_WS__A632      0.9960061      1.0038101      1.0027557     1.0160907
CS11_WS__A634      0.9942696      1.0024601      1.0009561     1.0039067
               CS11_WS__A634
CS11_WS__A188      0.9942696
CS11_WS__A214N     1.0024601
CS11_WS__A4415     1.0009561
CS11_WS__A632      1.0039067
CS11_WS__A634      1.0127906

13.3 Phenomic arc-cosine kernel (PAK)

The phenomic arc-cosine kernel is also calibrated once using GY as the reference trait, and the final kernel is reused for both GY and KW in the downstream models.

PAK1 <- AK1.fun(NIR.all)
dim(PAK1)

[1] 982 982

PAK1[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188    20.11384819      1.0354311      1.5396601    0.04303532
CS11_WS__A214N    1.03543108      0.1186102      0.3223817    0.13156365
CS11_WS__A4415    1.53966005      0.3223817      4.4944758    4.08786393
CS11_WS__A632     0.04303532      0.1315636      4.0878639    8.00581345
CS11_WS__A634     0.13435748      0.1268015      3.2061644    5.32671059
               CS11_WS__A634
CS11_WS__A188      0.1343575
CS11_WS__A214N     0.1268015
CS11_WS__A4415     3.2061644
CS11_WS__A632      5.3267106
CS11_WS__A634      3.7146155

IDs <- rownames(NIR.all)
PAK1 <- PAK1[rownames(PAK1) %in% IDs, rownames(PAK1) %in% IDs, drop = FALSE]

Z <- as.matrix(model.matrix(~ IDs - 1))
rownames(Z) <- IDs
Z0 <- tcrossprod(Z, Z)
ZD <- tcrossprod(Z0, PAK1)
P <- tcrossprod(ZD, Z0)

Pl <- marg.AK(y = Pheno$GY, AK1 = P, ml = 50)

IDs.L <- rownames(NIR.all)
Z.L <- as.matrix(model.matrix(~ IDs.L - 1))
rownames(Z.L) <- IDs.L
Z0.L <- tcrossprod(Z.L, Z.L)
P.L <- tcrossprod(tcrossprod(Z0.L, PAK1), Z0.L)

PAK <- AK.fun(AK1 = P.L, nl = Pl)
rownames(PAK) <- rownames(NIR.all)
colnames(PAK) <- rownames(NIR.all)

dim(PAK)

[1] 982 982

PAK[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      4.2003907     0.31899063      1.9609738      2.616716
CS11_WS__A214N     0.3189906     0.02476945      0.1506630      0.200971
CS11_WS__A4415     1.9609738     0.15066296      0.9385849      1.238905
CS11_WS__A632      2.6167163     0.20097096      1.2389054      1.671860
CS11_WS__A634      1.7824447     0.13690513      0.8445348      1.133085
               CS11_WS__A634
CS11_WS__A188      1.7824447
CS11_WS__A214N     0.1369051
CS11_WS__A4415     0.8445348
CS11_WS__A632      1.1330846
CS11_WS__A634      0.7757261

13.4 Arc-cosine interaction kernels

GAKE <- GAK * ZEZE
PAKE <- PAK * ZEZE
GAKW <- GAK * ZW
PAKW <- PAK * ZW

GAKE[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      0.9990646      0.9946313      0.9942027     0.9960061
CS11_WS__A214N     0.9946313      1.0135973      1.0013290     1.0038101
CS11_WS__A4415     0.9942027      1.0013290      1.0124484     1.0027557
CS11_WS__A632      0.9960061      1.0038101      1.0027557     1.0160907
CS11_WS__A634      0.9942696      1.0024601      1.0009561     1.0039067
               CS11_WS__A634
CS11_WS__A188      0.9942696
CS11_WS__A214N     1.0024601
CS11_WS__A4415     1.0009561
CS11_WS__A632      1.0039067
CS11_WS__A634      1.0127906

PAKE[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      4.2003907     0.31899063      1.9609738      2.616716
CS11_WS__A214N     0.3189906     0.02476945      0.1506630      0.200971
CS11_WS__A4415     1.9609738     0.15066296      0.9385849      1.238905
CS11_WS__A632      2.6167163     0.20097096      1.2389054      1.671860
CS11_WS__A634      1.7824447     0.13690513      0.8445348      1.133085
               CS11_WS__A634
CS11_WS__A188      1.7824447
CS11_WS__A214N     0.1369051
CS11_WS__A4415     0.8445348
CS11_WS__A632      1.1330846
CS11_WS__A634      0.7757261

GAKW[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      0.4962824      0.4940802      0.4938673     0.4947631
CS11_WS__A214N     0.4940802      0.5035015      0.4974073     0.4986398
CS11_WS__A4415     0.4938673      0.4974073      0.5029308     0.4981160
CS11_WS__A632      0.4947631      0.4986398      0.4981160     0.5047401
CS11_WS__A634      0.4939005      0.4979692      0.4972220     0.4986877
               CS11_WS__A634
CS11_WS__A188      0.4939005
CS11_WS__A214N     0.4979692
CS11_WS__A4415     0.4972220
CS11_WS__A632      0.4986877
CS11_WS__A634      0.5031008

PAKW[1:5, 1:5]

               CS11_WS__A188 CS11_WS__A214N CS11_WS__A4415 CS11_WS__A632
CS11_WS__A188      2.0865318     0.15845767     0.97410800    1.29984619
CS11_WS__A214N     0.1584577     0.01230415     0.07484139    0.09983174
CS11_WS__A4415     0.9741080     0.07484139     0.46623931    0.61542264
CS11_WS__A632      1.2998462     0.09983174     0.61542264    0.83049173
CS11_WS__A634      0.8854242     0.06800723     0.41952020    0.56285646
               CS11_WS__A634
CS11_WS__A188     0.88542419
CS11_WS__A214N    0.06800723
CS11_WS__A4415    0.41952020
CS11_WS__A632     0.56285646
CS11_WS__A634     0.38533966

14. Summarize nonlinear kernels

The table below provides a final integrity check for the nonlinear kernels before export.

kernel_inventory_nonlinear <- data.frame(
  kernel = c("GGK", "PGK", "GAK", "PAK", "GGKE", "PGKE", "GGKW", "PGKW", "GAKE", "PAKE", "GAKW", "PAKW"),
  n_rows = c(nrow(GGK), nrow(PGK), nrow(GAK), nrow(PAK), nrow(GGKE), nrow(PGKE), nrow(GGKW), nrow(PGKW), nrow(GAKE), nrow(PAKE), nrow(GAKW), nrow(PAKW)),
  n_cols = c(ncol(GGK), ncol(PGK), ncol(GAK), ncol(PAK), ncol(GGKE), ncol(PGKE), ncol(GGKW), ncol(PGKW), ncol(GAKE), ncol(PAKE), ncol(GAKW), ncol(PAKW)),
  is_square = c(
    nrow(GGK) == ncol(GGK), nrow(PGK) == ncol(PGK), nrow(GAK) == ncol(GAK), nrow(PAK) == ncol(PAK),
    nrow(GGKE) == ncol(GGKE), nrow(PGKE) == ncol(PGKE), nrow(GGKW) == ncol(GGKW), nrow(PGKW) == ncol(PGKW),
    nrow(GAKE) == ncol(GAKE), nrow(PAKE) == ncol(PAKE), nrow(GAKW) == ncol(GAKW), nrow(PAKW) == ncol(PAKW)
  ),
  symmetric_names = c(
    identical(rownames(GGK), colnames(GGK)), identical(rownames(PGK), colnames(PGK)),
    identical(rownames(GAK), colnames(GAK)), identical(rownames(PAK), colnames(PAK)),
    identical(rownames(GGKE), colnames(GGKE)), identical(rownames(PGKE), colnames(PGKE)),
    identical(rownames(GGKW), colnames(GGKW)), identical(rownames(PGKW), colnames(PGKW)),
    identical(rownames(GAKE), colnames(GAKE)), identical(rownames(PAKE), colnames(PAKE)),
    identical(rownames(GAKW), colnames(GAKW)), identical(rownames(PAKW), colnames(PAKW))
  ),
  aligned_with_reference = c(
    identical(rownames(GGK), reference_ids), identical(rownames(PGK), reference_ids),
    identical(rownames(GAK), reference_ids), identical(rownames(PAK), reference_ids),
    identical(rownames(GGKE), reference_ids), identical(rownames(PGKE), reference_ids),
    identical(rownames(GGKW), reference_ids), identical(rownames(PGKW), reference_ids),
    identical(rownames(GAKE), reference_ids), identical(rownames(PAKE), reference_ids),
    identical(rownames(GAKW), reference_ids), identical(rownames(PAKW), reference_ids)
  )
)

kernel_inventory_nonlinear %>%
  dplyr::mutate(
    n_rows = format(n_rows, big.mark = ","),
    n_cols = format(n_cols, big.mark = ",")
  ) %>%
  knitr::kable(
    caption = "Diagnostic summary of the nonlinear and interaction kernels.",
    align = "lcccccc"
  ) %>%
  kableExtra::kable_styling(
    bootstrap_options = c("striped", "hover", "condensed", "responsive"),
    full_width = FALSE,
    position = "left"
  ) %>%
  kableExtra::scroll_box(width = "100%", height = "340px")

Diagnostic summary of the nonlinear and interaction kernels.

kernel	n_rows	n_cols	is_square	symmetric_names	aligned_with_reference
GGK	982	982	TRUE	TRUE	TRUE
PGK	982	982	TRUE	TRUE	TRUE
GAK	982	982	TRUE	TRUE	TRUE
PAK	982	982	TRUE	TRUE	TRUE
GGKE	982	982	TRUE	TRUE	TRUE
PGKE	982	982	TRUE	TRUE	TRUE
GGKW	982	982	TRUE	TRUE	TRUE
PGKW	982	982	TRUE	TRUE	TRUE
GAKE	982	982	TRUE	TRUE	TRUE
PAKE	982	982	TRUE	TRUE	TRUE
GAKW	982	982	TRUE	TRUE	TRUE
PAKW	982	982	TRUE	TRUE	TRUE

15. Diagnostic figures for article reporting

To keep the visual narrative aligned with the manuscript, we generate a single integrated diagnostic figure with two rows and three columns. The first row contains the genomic kernels and the second row contains the phenomic kernels. This layout improves side-by-side comparison between linear, Gaussian, and arc-cosine structures while preserving a compact figure format for the article.

15.1 Integrated genomic and phenomic kernel figure

n_show <- 60

# ZG
ZG_sub <- ZG[seq_len(min(n_show, nrow(ZG))), seq_len(min(n_show, ncol(ZG))), drop = FALSE]
ZG_df <- as.data.frame(as.table(ZG_sub))
colnames(ZG_df) <- c("Row", "Column", "Value")
ZG_df$Row <- factor(ZG_df$Row, levels = rev(rownames(ZG_sub)))
ZG_df$Column <- factor(ZG_df$Column, levels = colnames(ZG_sub))

p_zg <- ggplot(ZG_df, aes(x = Column, y = Row, fill = Value)) +
  geom_raster() +
  scale_fill_gradient2(
    low = "#2166AC",
    mid = "white",
    high = "#B2182B",
    midpoint = median(ZG_df$Value, na.rm = TRUE),
    name = "Kernel value"
  ) +
  labs(
    title = "ZG",
    subtitle = "Linear genomic kernel",
    x = "Observation index",
    y = "Observation index"
  ) +
  theme_minimal(base_size = 11) +
  theme(
    plot.title = element_text(face = "bold", size = 12, hjust = 0.5),
    plot.subtitle = element_text(size = 10, hjust = 0.5),
    axis.title = element_text(face = "bold"),
    axis.text = element_text(size = 8),
    axis.text.x = element_blank(),
    axis.text.y = element_blank(),
    axis.ticks = element_blank(),
    legend.title = element_text(face = "bold"),
    legend.text = element_text(size = 8),
    panel.grid = element_blank()
  )

# GGK
GGK_sub <- GGK[seq_len(min(n_show, nrow(GGK))), seq_len(min(n_show, ncol(GGK))), drop = FALSE]
GGK_df <- as.data.frame(as.table(GGK_sub))
colnames(GGK_df) <- c("Row", "Column", "Value")
GGK_df$Row <- factor(GGK_df$Row, levels = rev(rownames(GGK_sub)))
GGK_df$Column <- factor(GGK_df$Column, levels = colnames(GGK_sub))

p_ggk <- ggplot(GGK_df, aes(x = Column, y = Row, fill = Value)) +
  geom_raster() +
  scale_fill_gradient2(
    low = "#2166AC",
    mid = "white",
    high = "#B2182B",
    midpoint = median(GGK_df$Value, na.rm = TRUE),
    name = "Kernel value"
  ) +
  labs(
    title = "GGK",
    subtitle = "Gaussian genomic kernel",
    x = "Observation index",
    y = "Observation index"
  ) +
  theme_minimal(base_size = 11) +
  theme(
    plot.title = element_text(face = "bold", size = 12, hjust = 0.5),
    plot.subtitle = element_text(size = 10, hjust = 0.5),
    axis.title = element_text(face = "bold"),
    axis.text = element_text(size = 8),
    axis.text.x = element_blank(),
    axis.text.y = element_blank(),
    axis.ticks = element_blank(),
    legend.title = element_text(face = "bold"),
    legend.text = element_text(size = 8),
    panel.grid = element_blank()
  )

# GAK
GAK_sub <- GAK[seq_len(min(n_show, nrow(GAK))), seq_len(min(n_show, ncol(GAK))), drop = FALSE]
GAK_df <- as.data.frame(as.table(GAK_sub))
colnames(GAK_df) <- c("Row", "Column", "Value")
GAK_df$Row <- factor(GAK_df$Row, levels = rev(rownames(GAK_sub)))
GAK_df$Column <- factor(GAK_df$Column, levels = colnames(GAK_sub))

p_gak <- ggplot(GAK_df, aes(x = Column, y = Row, fill = Value)) +
  geom_raster() +
  scale_fill_gradient2(
    low = "#2166AC",
    mid = "white",
    high = "#B2182B",
    midpoint = median(GAK_df$Value, na.rm = TRUE),
    name = "Kernel value"
  ) +
  labs(
    title = "GAK",
    subtitle = "Arc-cosine genomic kernel",
    x = "Observation index",
    y = "Observation index"
  ) +
  theme_minimal(base_size = 11) +
  theme(
    plot.title = element_text(face = "bold", size = 12, hjust = 0.5),
    plot.subtitle = element_text(size = 10, hjust = 0.5),
    axis.title = element_text(face = "bold"),
    axis.text = element_text(size = 8),
    axis.text.x = element_blank(),
    axis.text.y = element_blank(),
    axis.ticks = element_blank(),
    legend.title = element_text(face = "bold"),
    legend.text = element_text(size = 8),
    panel.grid = element_blank()
  )

# ZP
ZP_sub <- ZP[seq_len(min(n_show, nrow(ZP))), seq_len(min(n_show, ncol(ZP))), drop = FALSE]
ZP_df <- as.data.frame(as.table(ZP_sub))
colnames(ZP_df) <- c("Row", "Column", "Value")
ZP_df$Row <- factor(ZP_df$Row, levels = rev(rownames(ZP_sub)))
ZP_df$Column <- factor(ZP_df$Column, levels = colnames(ZP_sub))

p_zp <- ggplot(ZP_df, aes(x = Column, y = Row, fill = Value)) +
  geom_raster() +
  scale_fill_gradient2(
    low = "#2166AC",
    mid = "white",
    high = "#B2182B",
    midpoint = median(ZP_df$Value, na.rm = TRUE),
    name = "Kernel value"
  ) +
  labs(
    title = "ZP",
    subtitle = "Linear phenomic kernel",
    x = "Observation index",
    y = "Observation index"
  ) +
  theme_minimal(base_size = 11) +
  theme(
    plot.title = element_text(face = "bold", size = 12, hjust = 0.5),
    plot.subtitle = element_text(size = 10, hjust = 0.5),
    axis.title = element_text(face = "bold"),
    axis.text = element_text(size = 8),
    axis.text.x = element_blank(),
    axis.text.y = element_blank(),
    axis.ticks = element_blank(),
    legend.title = element_text(face = "bold"),
    legend.text = element_text(size = 8),
    panel.grid = element_blank()
  )

# PGK
PGK_sub <- PGK[seq_len(min(n_show, nrow(PGK))), seq_len(min(n_show, ncol(PGK))), drop = FALSE]
PGK_df <- as.data.frame(as.table(PGK_sub))
colnames(PGK_df) <- c("Row", "Column", "Value")
PGK_df$Row <- factor(PGK_df$Row, levels = rev(rownames(PGK_sub)))
PGK_df$Column <- factor(PGK_df$Column, levels = colnames(PGK_sub))

p_pgk <- ggplot(PGK_df, aes(x = Column, y = Row, fill = Value)) +
  geom_raster() +
  scale_fill_gradient2(
    low = "#2166AC",
    mid = "white",
    high = "#B2182B",
    midpoint = median(PGK_df$Value, na.rm = TRUE),
    name = "Kernel value"
  ) +
  labs(
    title = "PGK",
    subtitle = "Gaussian phenomic kernel",
    x = "Observation index",
    y = "Observation index"
  ) +
  theme_minimal(base_size = 11) +
  theme(
    plot.title = element_text(face = "bold", size = 12, hjust = 0.5),
    plot.subtitle = element_text(size = 10, hjust = 0.5),
    axis.title = element_text(face = "bold"),
    axis.text = element_text(size = 8),
    axis.text.x = element_blank(),
    axis.text.y = element_blank(),
    axis.ticks = element_blank(),
    legend.title = element_text(face = "bold"),
    legend.text = element_text(size = 8),
    panel.grid = element_blank()
  )

# PAK
PAK_sub <- PAK[seq_len(min(n_show, nrow(PAK))), seq_len(min(n_show, ncol(PAK))), drop = FALSE]
PAK_df <- as.data.frame(as.table(PAK_sub))
colnames(PAK_df) <- c("Row", "Column", "Value")
PAK_df$Row <- factor(PAK_df$Row, levels = rev(rownames(PAK_sub)))
PAK_df$Column <- factor(PAK_df$Column, levels = colnames(PAK_sub))

p_pak <- ggplot(PAK_df, aes(x = Column, y = Row, fill = Value)) +
  geom_raster() +
  scale_fill_gradient2(
    low = "#2166AC",
    mid = "white",
    high = "#B2182B",
    midpoint = median(PAK_df$Value, na.rm = TRUE),
    name = "Kernel value"
  ) +
  labs(
    title = "PAK",
    subtitle = "Arc-cosine phenomic kernel",
    x = "Observation index",
    y = "Observation index"
  ) +
  theme_minimal(base_size = 11) +
  theme(
    plot.title = element_text(face = "bold", size = 12, hjust = 0.5),
    plot.subtitle = element_text(size = 10, hjust = 0.5),
    axis.title = element_text(face = "bold"),
    axis.text = element_text(size = 8),
    axis.text.x = element_blank(),
    axis.text.y = element_blank(),
    axis.ticks = element_blank(),
    legend.title = element_text(face = "bold"),
    legend.text = element_text(size = 8),
    panel.grid = element_blank()
  )

kernel_integrated_plot <- (p_zg + p_ggk + p_gak) / (p_zp + p_pgk + p_pak) +
  plot_annotation(
    title = "Integrated diagnostic view of genomic and phenomic kernels",
    subtitle = "Top row: genomic kernels | Bottom row: phenomic kernels",
    theme = theme(
      plot.title = element_text(face = "bold", size = 13, hjust = 0.5),
      plot.subtitle = element_text(size = 10.5, hjust = 0.5)
    )
  )

print(kernel_integrated_plot)

Figure 1. Integrated diagnostic view of the genomic and phenomic kernel families. The first row shows the genomic kernels: linear genomic kernel (ZG), Gaussian genomic kernel (GGK), and arc-cosine genomic kernel (GAK). The second row shows the phenomic kernels: linear phenomic kernel (ZP), Gaussian phenomic kernel (PGK), and arc-cosine phenomic kernel (PAK).

Past versions of kernel-diagnostic-figure-integrated-1.png

Version	Author	Date
d35a997	WevertonGomesCosta	2026-03-27

ggsave(
  filename = "output/Matrizes/figures/kernel_integrated_diagnostics.tiff",
  plot = kernel_integrated_plot,
  width = 14,
  height = 9,
  dpi = 300,
  compression = "lzw",
  bg = "white"
)

16. Save outputs and reset the environment

The kernel objects created in this tutorial are computationally expensive to reproduce. For that reason, the final step saves them as .rds files and cleans the workspace so the next modeling script can start from a lighter memory state.

This last section is also written in a direct way: we list which objects will be saved, write them to disk, export the diagnostic tables, remove the remaining temporary objects, and then reload the saved matrices.

keep_names <- c(
  "ZE", "ZG", "ZP", "ZGZE", "ZPZE", "ZW", "ZGZW", "ZPZW",
  "GGK", "PGK", "GGKE", "PGKE", "GGKW", "PGKW",
  "GAK", "PAK", "GAKE", "PAKE", "GAKW", "PAKW",
  "Pheno", "Pedigree", "Pedigree_communs", "Geno.all", "NIR.all", "W"
)

current_objs <- ls(envir = .GlobalEnv)
to_keep <- intersect(current_objs, keep_names)
to_remove <- setdiff(current_objs, to_keep)

message("Objects kept (", length(to_keep), "): ", paste(to_keep, collapse = ", "))
message(
  "Objects removed (", length(to_remove), "): ",
  paste(head(to_remove, 40), collapse = ", "),
  if (length(to_remove) > 40) paste0(" ... (+", length(to_remove) - 40, " more)")
)

for (obj_name in to_keep) {
  saveRDS(get(obj_name), file = file.path("output/Matrizes", paste0(obj_name, ".rds")))
}

write.csv(
  kernel_inventory_linear,
  file = "output/Matrizes/kernel_inventory_linear.csv",
  row.names = FALSE
)

write.csv(
  kernel_inventory_nonlinear,
  file = "output/Matrizes/kernel_inventory_nonlinear.csv",
  row.names = FALSE
)

rm(list = to_remove, envir = .GlobalEnv)
gc()

           used  (Mb) gc trigger   (Mb)  max used   (Mb)
Ncells  2015856 107.7    4245425  226.8   4245425  226.8
Vcells 69322485 528.9  192803743 1471.0 241004678 1838.8

rds_files <- list.files("output/Matrizes", pattern = "\\.rds$", full.names = TRUE)

for (file in rds_files) {
  obj_name <- tools::file_path_sans_ext(basename(file))
  assign(obj_name, readRDS(file), envir = .GlobalEnv)
}

message("Objects reloaded: ", paste(tools::file_path_sans_ext(basename(rds_files)), collapse = ", "))

16. Final remarks

This tutorial converts raw genomic, phenomic, and climatic information into a reproducible collection of aligned kernels ready for downstream prediction models.

From a scientific workflow perspective, this script plays a structural role in the project:

• it defines the observation order used by the modeling stage,
• it makes the environmental representation explicit,
• it stores the kernels as reusable computational artifacts,
• and it documents how the linear and nonlinear relationships were encoded.

In the next stage of the project, these kernels become the inputs for the genomic prediction models compared in the article.

Session information

sessionInfo()

R version 4.5.1 (2025-06-13 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26200)

Matrix products: default
  LAPACK version 3.12.1

locale:
[1] LC_COLLATE=Portuguese_Brazil.utf8  LC_CTYPE=Portuguese_Brazil.utf8   
[3] LC_MONETARY=Portuguese_Brazil.utf8 LC_NUMERIC=C                      
[5] LC_TIME=Portuguese_Brazil.utf8    

time zone: America/Sao_Paulo
tzcode source: internal

attached base packages:
[1] grid      parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] patchwork_1.3.2   gridExtra_2.3     MASS_7.3-65       doParallel_1.0.17
 [5] iterators_1.0.14  foreach_1.5.2     BGLR_1.1.4        data.table_1.17.8
 [9] lubridate_1.9.4   forcats_1.0.1     stringr_1.6.0     dplyr_1.2.0      
[13] purrr_1.2.1       readr_2.2.0       tidyr_1.3.2       tibble_3.3.1     
[17] ggplot2_4.0.2     tidyverse_2.0.0  

loaded via a namespace (and not attached):
 [1] gtable_0.3.6       xfun_0.54          bslib_0.9.0        tzdb_0.5.0        
 [5] vctrs_0.7.1        tools_4.5.1        generics_0.1.4     pkgconfig_2.0.3   
 [9] RColorBrewer_1.1-3 S7_0.2.1           lifecycle_1.0.5    truncnorm_1.0-9   
[13] compiler_4.5.1     farver_2.1.2       git2r_0.36.2       textshaping_1.0.4 
[17] codetools_0.2-20   httpuv_1.6.16      htmltools_0.5.9    sass_0.4.10       
[21] yaml_2.3.12        later_1.4.4        pillar_1.11.1      jquerylib_0.1.4   
[25] whisker_0.4.1      cachem_1.1.0       tidyselect_1.2.1   digest_0.6.39     
[29] stringi_1.8.7      labeling_0.4.3     rprojroot_2.1.1    fastmap_1.2.0     
[33] cli_3.6.5          magrittr_2.0.4     withr_3.0.2        scales_1.4.0      
[37] promises_1.5.0     timechange_0.3.0   rmarkdown_2.30     otel_0.2.0        
[41] workflowr_1.7.2    ragg_1.5.0         hms_1.1.4          kableExtra_1.4.0  
[45] evaluate_1.0.5     knitr_1.50         viridisLite_0.4.2  rlang_1.1.7       
[49] Rcpp_1.1.1         glue_1.8.0         xml2_1.5.1         svglite_2.2.2     
[53] rstudioapi_0.17.1  jsonlite_2.0.0     R6_2.6.1           systemfonts_1.3.1 
[57] fs_1.6.6