Histograms

workflowr

• Summary
• Checks
• Past versions

Last updated: 2021-06-11

Checks: 7 0

Knit directory: ampel-leipzig-meld/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

---

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Environment: empty

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Seed: set.seed(20210604)

The command set.seed(20210604) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

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Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

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Repository version: 4ac1449

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The results in this page were generated with repository version 4ac1449. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    _targets/
    Ignored:    container/

Untracked files:
    Untracked:  analysis/linecharts.html

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/histograms.Rmd) and HTML (docs/histograms.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	783c49f	Sebastian Gibb	2021-06-11	chore: rebuild site
Rmd	5ba50b5	Sebastian Gibb	2021-06-11	refactor: move boxplots in separate report
html	c748698	Sebastian Gibb	2021-06-11	chore: rebuild site
Rmd	65dd1ac	Sebastian Gibb	2021-06-11	fix: size and color of the beeswarm plots
Rmd	d174eaf	Sebastian Gibb	2021-06-11	fix: remove useless headings
html	eb90d2e	Sebastian Gibb	2021-06-11	chore: rebuild site
Rmd	60372c0	Sebastian Gibb	2021-06-11	feat: add zlog_data
html	aac7ea8	Sebastian Gibb	2021-06-11	chore: rebuild site
html	602e714	Sebastian Gibb	2021-06-11	chore: rebuild site
Rmd	3b9b8b9	Sebastian Gibb	2021-06-11	feat: use imputed data
html	24a733a	Sebastian Gibb	2021-06-11	docs: rebuild site
html	945a45a	Sebastian Gibb	2021-06-11	chore: rebuild site
Rmd	c7866e7	Sebastian Gibb	2021-06-11	feat: add basic targets workflow

---

library("targets")
tar_load(imp_data)
tar_load(zlog_data)

.hist <- function(
    ..., xlab = deparse(substitute(x)), main = paste("Histogram of", xlab),
    col = palette.colors(2L)[2L]
)hist(..., main = main, xlab = xlab, col = col)

.qqnorm <- function(y, ..., yname = deparse(substitute(y)),
    main = paste0("Normal Q-Q Plot (", yname, ")"),
    ylab = paste0("Sample Quantiles (", yname, ")"),
    col = palette.colors(2L)[2L]) {
    qqnorm(y, ..., main = main, ylab = ylab, col = col, pch = 19L)
    qqline(y, ..., col = col)
}

Age

.hist(imp_data$Age, xlab = "Age")

Past versions of histograms_age-1.png

Version	Author	Date
945a45a	Sebastian Gibb	2021-06-11

Raw Data (imputed)

labv <- sort(grep("_[SECQ]$", colnames(imp_data), value = TRUE))

for (v in labv) {
    cat("\n\n##", v , "\n\n")
    .hist(imp_data[[v]], main = paste0("Histogram of ", v), xlab = v)
    .qqnorm(imp_data[[v]], yname = v)
}

ALAT_S

Past versions of histograms_labs-1.png

Version	Author	Date
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-2.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

ALB_S

Past versions of histograms_labs-3.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-4.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

AP_S

Past versions of histograms_labs-5.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-6.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

ASAT_S

Past versions of histograms_labs-7.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-8.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

B_MPV_E

Past versions of histograms_labs-9.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-10.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

B_PLT_E

Past versions of histograms_labs-11.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-12.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

B_WBC_E

Past versions of histograms_labs-13.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-14.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

BILI_S

Past versions of histograms_labs-15.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-16.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

BILID_S

Past versions of histograms_labs-17.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-18.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

CA_S

Past versions of histograms_labs-19.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-20.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

CHE_S

Past versions of histograms_labs-21.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-22.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

CHOLG_S

Past versions of histograms_labs-23.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-24.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

CL_S

Past versions of histograms_labs-25.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11
602e714	Sebastian Gibb	2021-06-11
945a45a	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-26.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CRE_S

Past versions of histograms_labs-27.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-28.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CRP_S

Past versions of histograms_labs-29.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-30.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CYSC_S

Past versions of histograms_labs-31.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-32.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

GGT_S

Past versions of histograms_labs-33.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-34.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

IL6_S

Past versions of histograms_labs-35.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-36.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

INR_C

Past versions of histograms_labs-37.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-38.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

NA_S

Past versions of histograms_labs-39.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-40.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

P_S

Past versions of histograms_labs-41.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-42.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

PALB_S

Past versions of histograms_labs-43.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-44.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

PROT_S

Past versions of histograms_labs-45.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-46.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

PTH_S

Past versions of histograms_labs-47.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-48.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

VDT_OH_S

Past versions of histograms_labs-49.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs-50.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

Zlog Data (imputed)

for (v in labv) {
    cat("\n\n##", v , "\n\n")
    .hist(zlog_data[[v]], main = paste0("Histogram of ", v), xlab = v)
    .qqnorm(zlog_data[[v]], yname = v)
}

ALAT_S

Past versions of histograms_labs_zlog-1.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-2.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

ALB_S

Past versions of histograms_labs_zlog-3.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-4.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

AP_S

Past versions of histograms_labs_zlog-5.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-6.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

ASAT_S

Past versions of histograms_labs_zlog-7.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-8.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

B_MPV_E

Past versions of histograms_labs_zlog-9.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-10.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

B_PLT_E

Past versions of histograms_labs_zlog-11.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-12.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

B_WBC_E

Past versions of histograms_labs_zlog-13.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-14.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

BILI_S

Past versions of histograms_labs_zlog-15.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-16.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

BILID_S

Past versions of histograms_labs_zlog-17.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-18.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CA_S

Past versions of histograms_labs_zlog-19.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-20.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CHE_S

Past versions of histograms_labs_zlog-21.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-22.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CHOLG_S

Past versions of histograms_labs_zlog-23.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-24.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CL_S

Past versions of histograms_labs_zlog-25.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-26.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CRE_S

Past versions of histograms_labs_zlog-27.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-28.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CRP_S

Past versions of histograms_labs_zlog-29.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-30.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

CYSC_S

Past versions of histograms_labs_zlog-31.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-32.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

GGT_S

Past versions of histograms_labs_zlog-33.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-34.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

IL6_S

Past versions of histograms_labs_zlog-35.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-36.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

INR_C

Past versions of histograms_labs_zlog-37.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-38.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

NA_S

Past versions of histograms_labs_zlog-39.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-40.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

P_S

Past versions of histograms_labs_zlog-41.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-42.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

PALB_S

Past versions of histograms_labs_zlog-43.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-44.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

PROT_S

Past versions of histograms_labs_zlog-45.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-46.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

PTH_S

Past versions of histograms_labs_zlog-47.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-48.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

VDT_OH_S

Past versions of histograms_labs_zlog-49.png

Version	Author	Date
eb90d2e	Sebastian Gibb	2021-06-11

Past versions of histograms_labs_zlog-50.png

Version	Author	Date
783c49f	Sebastian Gibb	2021-06-11
eb90d2e	Sebastian Gibb	2021-06-11

Session information

sessionInfo()

R version 4.1.0 (2021-05-18)
Platform: x86_64-unknown-linux-gnu (64-bit)

Matrix products: default
BLAS/LAPACK: /gnu/store/bs9pl1f805ins80xaf4s3n35a0x2lyq3-openblas-0.3.9/lib/libopenblasp-r0.3.9.so

locale:
 [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=de_DE.UTF-8    
 [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=de_DE.UTF-8   
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] targets_0.4.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6        highr_0.9         pillar_1.6.1      compiler_4.1.0   
 [5] later_1.2.0       git2r_0.28.0      workflowr_1.6.2   tools_4.1.0      
 [9] digest_0.6.27     evaluate_0.14     lifecycle_1.0.0   tibble_3.1.2     
[13] pkgconfig_2.0.3   rlang_0.4.11      igraph_1.2.6      cli_2.5.0        
[17] yaml_2.2.1        xfun_0.23         withr_2.4.2       stringr_1.4.0    
[21] knitr_1.33        fs_1.5.0          vctrs_0.3.8       tidyselect_1.1.1 
[25] rprojroot_2.0.2   glue_1.4.2        data.table_1.14.0 R6_2.5.0         
[29] processx_3.5.2    fansi_0.5.0       rmarkdown_2.8     purrr_0.3.4      
[33] callr_3.7.0       magrittr_2.0.1    whisker_0.4       promises_1.2.0.1 
[37] ps_1.6.0          codetools_0.2-18  ellipsis_0.3.2    htmltools_0.5.1.1
[41] httpuv_1.6.1      utf8_1.2.1        stringi_1.6.2     crayon_1.4.1