Last updated: 2021-06-07
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Knit directory: ChromatinSplicingQTLs/analysis/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | dd0eadb | Benjmain Fair | 2020-08-21 | initial commit |
| html | dd0eadb | Benjmain Fair | 2020-08-21 | initial commit |
Welcome to my research website.
This project will investigate the correlation of genetic effects on chromatin, splicing, transcription, and complex phenotypes, using naturally occuring human genetic variation.
We are still collecting data, but I have also been perusing around published data a bit.
Here are links to all of my rendered analysis Rmarkdowns (code here):
library(tidyverse)── Attaching packages ─────────────────────────────────────── tidyverse 1.2.1 ──✔ ggplot2 3.2.1 ✔ purrr 0.3.3
✔ tibble 3.0.4 ✔ dplyr 1.0.2
✔ tidyr 1.1.2 ✔ stringr 1.4.0
✔ readr 1.4.0 ✔ forcats 0.5.0── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()rmds <- list.files(path = "../analysis/", pattern="^\\d+.+")
rmd_htmls <- str_replace(rmds, "Rmd$", "html")
for(i in rmd_htmls){
cat("[", i, "](", i,")\n")
}20200110_PickSamplesForGrowth.html 20200210_PickSamplesToOrder.html 20210604_CheckSampleGenotypes.html
sessionInfo()R version 3.4.3 (2017-11-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Scientific Linux 7.4 (Nitrogen)
Matrix products: default
BLAS/LAPACK: /software/openblas-0.2.19-el7-x86_64/lib/libopenblas_haswellp-r0.2.19.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] forcats_0.5.0 stringr_1.4.0 dplyr_1.0.2 purrr_0.3.3
[5] readr_1.4.0 tidyr_1.1.2 tibble_3.0.4 ggplot2_3.2.1
[9] tidyverse_1.2.1
loaded via a namespace (and not attached):
[1] Rcpp_1.0.3 cellranger_1.1.0 compiler_3.4.3 pillar_1.4.7
[5] later_1.0.0 git2r_0.26.1 workflowr_1.5.0 tools_3.4.3
[9] digest_0.6.27 lubridate_1.7.9.2 jsonlite_1.6 evaluate_0.14
[13] lifecycle_0.2.0 gtable_0.3.0 pkgconfig_2.0.3 rlang_0.4.9
[17] cli_2.0.0 rstudioapi_0.10 yaml_2.2.0 haven_2.3.1
[21] xfun_0.20 withr_2.1.2 xml2_1.2.0 httr_1.4.2
[25] knitr_1.26 hms_0.5.3 generics_0.1.0 fs_1.3.1
[29] vctrs_0.3.6 rprojroot_1.3-2 grid_3.4.3 tidyselect_1.1.0
[33] glue_1.4.2 R6_2.4.1 fansi_0.4.0 readxl_1.3.1
[37] rmarkdown_2.6 modelr_0.1.8 magrittr_1.5 whisker_0.3-2
[41] backports_1.1.5 scales_1.1.0 promises_1.1.0 htmltools_0.4.0
[45] ellipsis_0.3.0 assertthat_0.2.1 rvest_0.3.6 colorspace_2.0-0
[49] httpuv_1.5.2 stringi_1.4.3 lazyeval_0.2.2 munsell_0.5.0
[53] broom_0.7.3 crayon_1.3.4