Last updated: 2020-01-07

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Knit directory: Comparative_APA/analysis/

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Unstaged changes:
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    Modified:   analysis/multiMap.Rmd

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Rmd 670020f brimittleman 2020-01-07 add translation protien overlap
html dec23c1 brimittleman 2020-01-06 Build site.
Rmd 54015c8 brimittleman 2020-01-06 add overlap dom with dAPA
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Rmd 5e85704 brimittleman 2020-01-06 add overlap with eQTLs
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Rmd 6214ec5 brimittleman 2019-12-30 add venn diagram for diff apa
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Rmd f914d49 brimittleman 2019-09-02 Start workflowr project.

I am interesting in understanding differential APA between human and chimpanzees. I used 3’ Seq to identify PAS for total and nuclear frations of LCL in both species.

Preparation and QC:

Catalog PAS:

Differential Isoform Analysis:

Quantify Phenotypes with RNA:

Intersect with outside molecular phenotypes:

Extra QC and Analysis