Last updated: 2019-05-02

Checks: 2 0

Knit directory: apaQTL/analysis/

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These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
Rmd 2067946 brimittleman 2019-05-02 add old vs new data usage analysis
html 60093ce brimittleman 2019-05-02 Build site.
Rmd 24c2ceb brimittleman 2019-05-02 add diff iso
html ac656aa brimittleman 2019-04-30 Build site.
Rmd f9b8195 brimittleman 2019-04-30 understand usage of new pas
html e3bdc3a brimittleman 2019-04-29 Build site.
html be227e7 brimittleman 2019-04-25 Build site.
html b2525c3 brimittleman 2019-04-24 Build site.
Rmd 9bbe437 brimittleman 2019-04-24 add corr analysis
html 214c05c brimittleman 2019-04-23 Build site.
Rmd 27b11e3 brimittleman 2019-04-23 start signal site analysis
html 1fb7086 brimittleman 2019-04-23 Build site.
html e650e08 brimittleman 2019-04-22 Build site.
Rmd 851c963 brimittleman 2019-04-22 add reads against feature
html 28bd046 brimittleman 2019-04-18 Build site.
Rmd 017f5c0 brimittleman 2019-04-18 add map apa qtl pipeline
html 874081d brimittleman 2019-04-18 Build site.
Rmd 22bfb66 brimittleman 2019-04-18 add pas usage qc analysis
html aab1fca brimittleman 2019-04-17 Build site.
Rmd 057dc1a brimittleman 2019-04-17 add bam 2 pas analysis
html fd1f8cb brimittleman 2019-04-13 Build site.
Rmd f5e23f3 brimittleman 2019-04-11 add fastq 2 bam
html 444f1c7 brimittleman 2019-04-11 Build site.
html 1c955c5 brimittleman 2019-04-11 Build site.
Rmd 0f343f8 brimittleman 2019-04-11 Start workflowr project.

Welcome to my research website.

Preprocessing:

In the preprocessing steps of the analysis I will go from the fastq files that come off the sequencer to the PAS I will use for the rest of the analysis.

QC and base visualization:

These files create some of the QC metrics I used for the analysis.

apaQTL

Differential Isoform Analysis