Last updated: 2020-10-19
Checks: 7 0
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
set.seed(20200714) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.
Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 08d1e37. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use
wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files: Ignored: .Rhistory Ignored: .Rproj.user/ Untracked files: Untracked: code/parse_ochca_data.R Untracked: data/oc/ Unstaged changes: Modified: analysis/incidence-maps.Rmd Modified: analysis/positivity-maps.Rmd Modified: analysis/testing-maps.Rmd Modified: code/functions.R Modified: data/oc_city_data.csv Modified: uci_covid19_dashboard.Rproj
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (
analysis/southern-oc.Rmd) and HTML (
docs/southern-oc.html) files. If you’ve configured a remote Git repository (see
?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
|html||08d1e37||markellekelly||2020-10-19||automatic update - 2020-10-19|
|html||9bfe943||markellekelly||2020-10-18||automatic update - 2020-10-18|
|html||78e874b||markellekelly||2020-10-17||automatic update - 2020-10-17|
|html||cb0af7f||markellekelly||2020-10-16||automatic update - 2020-10-16|
|html||6214d3e||Damon Bayer||2020-10-16||Full rebuild|
|html||e295ddb||Thanasi Bakis||2020-10-15||Added OC 5 Most Populous Cities comparison|
|Rmd||604470a||Thanasi Bakis||2020-10-15||Added OC cities comparison dropdown|
|html||604470a||Thanasi Bakis||2020-10-15||Added OC cities comparison dropdown|
Data provided by Orange County Health Care Agency.
Last available date reported is 2020-10-18.
Last updated on 2020-10-19.
R version 4.0.2 (2020-06-22) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19042) Matrix products: default locale:  LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252  LC_MONETARY=English_United States.1252  LC_NUMERIC=C  LC_TIME=English_United States.1252 attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  cowplot_1.1.0 ckanr_0.5.0 DBI_1.1.0 ggtext_0.1.0  glue_1.4.2 TTR_0.24.2 scales_1.1.1 lubridate_1.7.9  forcats_0.5.0 stringr_1.4.0 dplyr_1.0.2 purrr_0.3.4  readr_1.4.0 tidyr_1.1.2 tibble_3.0.3 ggplot2_3.3.2  tidyverse_1.3.0 workflowr_1.6.2 loaded via a namespace (and not attached):  Rcpp_1.0.5 lattice_0.20-41 zoo_1.8-8 assertthat_0.2.1  rprojroot_1.3-2 digest_0.6.25 R6_2.4.1 cellranger_1.1.0  backports_1.1.10 reprex_0.3.0 evaluate_0.14 httr_1.4.2  pillar_1.4.6 rlang_0.4.7 curl_4.3 readxl_1.3.1  rstudioapi_0.11 whisker_0.4 blob_1.2.1 rmarkdown_2.4  labeling_0.3 urltools_1.7.3 triebeard_0.3.0 gridtext_0.1.1  munsell_0.5.0 broom_0.7.1 compiler_4.0.2 httpuv_1.5.4  modelr_0.1.8 xfun_0.18 pkgconfig_2.0.3 htmltools_0.5.0  tidyselect_1.1.0 httpcode_0.3.0 fansi_0.4.1 crayon_1.3.4  dbplyr_1.4.4 withr_2.3.0 later_18.104.22.168 crul_1.0.0  grid_4.0.2 jsonlite_1.7.1 gtable_0.3.0 lifecycle_0.2.0  git2r_0.27.1 magrittr_1.5 cli_2.0.2 stringi_1.5.3  farver_2.0.3 fs_1.5.0 promises_1.1.1 xml2_1.3.2  ellipsis_0.3.1 xts_0.12.1 generics_0.0.2 vctrs_0.3.4  tools_4.0.2 markdown_1.1 hms_0.5.3 yaml_2.2.1  colorspace_1.4-1 rvest_0.3.6 knitr_1.30 haven_2.3.1