Last updated: 2020-08-08
Checks: 2 0
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 597d802. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use
wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files: Ignored: .Rhistory Ignored: .Rproj.user/
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (
analysis/about.Rmd) and HTML (
docs/about.html) files. If you’ve configured a remote Git repository (see
?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
|Rmd||597d802||vnminin||2020-08-08||added Suellen Hopfer and Markelle Kelly to the group member list, swapped Andrew for Suellen as spokesperson|
|html||fb0028a||vnminin||2020-08-08||ca portal got data|
|html||9589b6d||vnminin||2020-08-07||two time stamps|
|html||60756e0||Damon Bayer||2020-08-07||data update|
|html||b3f0a7a||vnminin||2020-08-06||rebuilding to fix testing not linking to itself|
|html||35e30c1||vnminin||2020-08-06||daily data update; I am a good robot|
|html||6466f12||vnminin||2020-08-04||data pull and fixed the last date being cut off|
|html||4afb037||vnminin||2020-08-02||forgot to republish|
|html||e3847ed||vnminin||2020-08-02||added testing maps|
|Rmd||a2c2c61||vnminin||2020-08-01||added Software section to About|
|html||a2c2c61||vnminin||2020-08-01||added Software section to About|
|html||8d0b6ce||vnminin||2020-08-01||daily date update|
|html||e024ad3||Damon Bayer||2020-07-31||Positivity Maps + Navigation Updates|
|html||d621638||Damon Bayer||2020-07-31||Icons in navigation|
|html||490ebde||vnminin||2020-07-31||daily data pull|
|html||4b572aa||vnminin||2020-07-30||fixing Trends navigation|
|Rmd||a8b89cf||vnminin||2020-07-30||added maps sectio to About page|
|html||a8b89cf||vnminin||2020-07-30||added maps sectio to About page|
|html||acc591d||vnminin||2020-07-30||time stamp for maps|
|html||a93ad42||vnminin||2020-07-30||now really changing filel name|
|html||b785fc2||Damon Bayer||2020-07-30||Wider Maps page|
|html||7e4cb79||vnminin||2020-07-30||republishing just in case|
|html||244103f||vnminin||2020-07-30||rebuilt just in case|
|html||9b1533f||Damon Bayer||2020-07-30||Separate Maps Page|
|html||cb818d8||Damon Bayer||2020-07-30||Added maps|
|html||a4d0d51||vnminin||2020-07-29||pulling the most recent data from ca portal|
|Rmd||c394748||vnminin||2020-07-28||not happy, but tired|
|html||c394748||vnminin||2020-07-28||not happy, but tired|
|html||cdd3081||vnminin||2020-07-28||still not happy|
|Rmd||b03bd2f||vnminin||2020-07-28||still not happy|
|Rmd||c124229||vnminin||2020-07-28||not happy with mobile version|
|html||c124229||vnminin||2020-07-28||not happy with mobile version|
|Rmd||d9d640e||vnminin||2020-07-28||making stat logo a little smaller|
|html||d9d640e||vnminin||2020-07-28||making stat logo a little smaller|
|Rmd||7d0bcf4||vnminin||2020-07-28||experimenting with spacing and sizing of logos|
|html||7d0bcf4||vnminin||2020-07-28||experimenting with spacing and sizing of logos|
|html||0590a7c||Damon Bayer||2020-07-28||Even better colors|
|html||a5a62c9||Damon Bayer||2020-07-28||Better Colors|
|Rmd||db476c1||vnminin||2020-07-28||small About grammar edit|
|html||db476c1||vnminin||2020-07-28||small About grammar edit|
|Rmd||f770300||vnminin||2020-07-28||added links to logos|
|html||f770300||vnminin||2020-07-28||added links to logos|
|Rmd||68acc48||vnminin||2020-07-28||added IDS logo|
|html||68acc48||vnminin||2020-07-28||added IDS logo|
|Rmd||0ec36bf||vnminin||2020-07-27||added media bit to contact|
|html||0ec36bf||vnminin||2020-07-27||added media bit to contact|
|html||bb1619b||Damon Bayer||2020-07-27||Some UCI Colors|
|Rmd||2964ef6||vnminin||2020-07-27||added joining the group to about|
|Rmd||7e96a35||vnminin||2020-07-27||added members to About page and more playing with logos|
|html||7e96a35||vnminin||2020-07-27||added members to About page and more playing with logos|
|Rmd||1f6de11||vnminin||2020-07-27||playing with logos|
|html||1f6de11||vnminin||2020-07-27||playing with logos|
|html||abd9c55||Damon Bayer||2020-07-27||Update HTML|
|Rmd||01f6052||vnminin||2020-07-27||edits of About text|
|html||01f6052||vnminin||2020-07-27||edits of About text|
|html||84ab7e1||vnminin||2020-07-27||july 27 ca data update|
|html||bab42bc||vnminin||2020-07-26||triggering an update with latest data|
|Rmd||32001f7||igoldsteinh||2020-07-24||hopefully commented methods section|
|html||f08c6cc||Damon Bayer||2020-07-24||Watermark & Legend Fix|
|html||eb680ce||vnminin||2020-07-24||republishing to update plots|
|Rmd||f07587a||vnminin||2020-07-23||all plots start on the same date; moved subtitle to title|
|html||f07587a||vnminin||2020-07-23||all plots start on the same date; moved subtitle to title|
|html||9aa359e||vnminin||2020-07-23||shortenting title for friendlier mobile version|
|html||c14824c||Damon Bayer||2020-07-23||Remove Home text|
|Rmd||4d981d1||vnminin||2020-07-22||started editing about|
|html||4d981d1||vnminin||2020-07-22||started editing about|
|html||b4fb3ae||Damon Bayer||2020-07-21||update 2020-07-21|
|html||c95cee3||Damon Bayer||2020-07-20||Hide Workflowr buttons|
|html||5369804||Damon Bayer||2020-07-19||Update 2020-07-19|
|html||65c7195||Damon Bayer||2020-07-16||theme change|
|html||66110a1||Damon Bayer||2020-07-14||Initial Proof of Concept|
|Rmd||6151dc8||Damon Bayer||2020-07-14||Start workflowr project.|
This is an effort to provide timely and understandable COVID-19 data visualizations to the public in Orange County, California. The effort is coordinated by the UC Irvine COVID Awareness Group, consisting of students and faculty from the following units at UC Irvine.
Damon Bayer, Bernadette Boden-Albala, Isaac Goldstein, Suellen Hopfer, Markelle Kelly, Rachel Longjohn, Vladimir Minin, Andrew Noymer, Daniel M. Parker, Padhraic Smyth.
If you would like to know more about technical details and/or to join the group, get in touch with Prof. Vladimir Minin. For general media inquiries contact Prof. Suellen Hopfer. If you are a media organization and would like to use our images, you do not need to ask for permission. Just don’t forget to acknowledge UC Irvine COVID Awareness Group. The content of this site is licensed under the most permissive creative commons license (click on License tab in the navigation bar to learn more).
Our figures present 7 day moving averages. This means that, for cases on July 7th, for example, we report the average number of cases per million people during the period July 1st to July 7th. On July 8th, we report the average number of cases per million people during the period July 2nd to July 8th, etc. We use moving averages as opposed to raw data (such as the actual number of cases per million people on July 7th) because cases can increase or decrease dramatically on a particular day, making it difficult to see trends in the time series of interest. Moving averages help highlight these trends more clearly.
In order to calculate, for example, cases per million people, we take the number of cases reported in a county for a day, divide by the 2019 census population for that county and then multiply by 1 million. We do this because different counties have very different population sizes (Los Angeles County has approximately 10 million while Orange County has approximately 3 million) and we want to provide numbers which are comparable across counties.
The number of daily new cases depends not only on the number of infected individuals in the population, but also on the number of tests performed. It would be much better to plot the positivity ratio (positive cases divided by the total number of tests) instead of cases. Unfortunately, the number of Covid-19 diagnostic tests performed in a day is not available at a county level from the California Open Data Portal at this time. LA and OC counties do have testing data available (LA COVID-19 data, OC COVID-19 Data), but we prefer to use one data source for now.
Maps of cases have been created with data provided by the Orange County Health Care Agency. If an individual tested multiple times, only the first postive test was counted as a case.