Last updated: 2020-08-01

Checks: 6 1

Knit directory: uci_covid19_dashboard/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown is untracked by Git. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20200714)

The command set.seed(20200714) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

<<<<<<< HEAD:docs/maps.html Repository version: 490ebde

>>>>>>> e024ad3e4fa81d6bf4cb060c4bb07e09df565c57:docs/incidence-maps.html

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

<<<<<<< HEAD:docs/maps.html The results in this page were generated with repository version 490ebde. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. ======= The results in this page were generated with repository version d621638. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. >>>>>>> e024ad3e4fa81d6bf4cb060c4bb07e09df565c57:docs/incidence-maps.html

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    data/.DS_Store

Untracked files:
    Untracked:  analysis/incidence-maps.Rmd
    Untracked:  analysis/positivity-maps.html.Rmd

Unstaged changes:
    Modified:   analysis/_site.yml
    Deleted:    analysis/maps.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

There are no past versions. Publish this analysis with wflow_publish() to start tracking its development.

<<<<<<< HEAD:docs/maps.html
File Version Author Date Message
html 490ebde vnminin 2020-07-31 daily data pull
html 4b572aa vnminin 2020-07-30 fixing Trends navigation
Rmd acc591d vnminin 2020-07-30 time stamp for maps
html acc591d vnminin 2020-07-30 time stamp for maps
Rmd a93ad42 vnminin 2020-07-30 now really changing filel name
html a93ad42 vnminin 2020-07-30 now really changing filel name
Rmd 57c6a04 vnminin 2020-07-30 typo in oc label file name fixed
html aba6b24 Damon Bayer 2020-07-30 Merge remote-tracking branch ‘origin/master’
Rmd b785fc2 Damon Bayer 2020-07-30 Wider Maps page
html b785fc2 Damon Bayer 2020-07-30 Wider Maps page
html 7e4cb79 vnminin 2020-07-30 republishing just in case
Rmd 4e48b0d vnminin 2020-07-30 added OC map with labels
html 4e48b0d vnminin 2020-07-30 added OC map with labels
html 244103f vnminin 2020-07-30 rebuilt just in case
Rmd 5c7f914 Damon Bayer 2020-07-30 Fixed 3 map alignment
html 5c7f914 Damon Bayer 2020-07-30 Fixed 3 map alignment
Rmd ab904ed Damon Bayer 2020-07-30 3 column maps
html ab904ed Damon Bayer 2020-07-30 3 column maps
Rmd 9b1533f Damon Bayer 2020-07-30 Separate Maps Page
html 9b1533f Damon Bayer 2020-07-30 Separate Maps Page
======= >>>>>>> e024ad3e4fa81d6bf4cb060c4bb07e09df565c57:docs/incidence-maps.html

Data provided by the Orange County Health Care Agency.

Last updated 2020-07-29.


sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.6

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5      rstudioapi_0.11 knitr_1.29      magrittr_1.5   
 [5] R6_2.4.1        rlang_0.4.7     stringr_1.4.0   tools_4.0.2    
 [9] xfun_0.15       git2r_0.27.1    htmltools_0.5.0 ellipsis_0.3.1 
[13] rprojroot_1.3-2 yaml_2.2.1      digest_0.6.25   tibble_3.0.3   
[17] lifecycle_0.2.0 crayon_1.3.4    later_1.1.0.1   vctrs_0.3.1    
[21] promises_1.1.1  fs_1.4.2        glue_1.4.1      evaluate_0.14  
[25] rmarkdown_2.3   stringi_1.4.6   compiler_4.0.2  pillar_1.4.6   
[29] backports_1.1.8 httpuv_1.5.4    pkgconfig_2.0.3