Last updated: 2020-07-17

Checks: 6 1

Knit directory: uci_covid19_dashboard/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

The command set.seed(20200714) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 02dbf86. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Unstaged changes:
    Modified:   analysis/index.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 02dbf86 Damon Bayer 2020-07-17 New Data + ICU Occupancy
html 02dbf86 Damon Bayer 2020-07-17 New Data + ICU Occupancy
html 65c7195 Damon Bayer 2020-07-16 theme change
html cc4c194 Damon Bayer 2020-07-16 First Draft
Rmd 68a123b Damon Bayer 2020-07-16 workflowr::wflow_git_commit(all = T)
Rmd de88c5a Damon Bayer 2020-07-16 workflowr::wflow_git_commit(all = T)
html de88c5a Damon Bayer 2020-07-16 workflowr::wflow_git_commit(all = T)
html 6b4b352 Damon Bayer 2020-07-14 Build site.
Rmd 524eb53 Damon Bayer 2020-07-14 wflow_publish(“analysis/index.Rmd”)
Rmd 66110a1 Damon Bayer 2020-07-14 Initial Proof of Concept
html 66110a1 Damon Bayer 2020-07-14 Initial Proof of Concept
Rmd 6151dc8 Damon Bayer 2020-07-14 Start workflowr project.

Data collected from the California Open Data Portal.

Last updated 2020-07-17.


R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.5

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ckanr_0.4.0     DBI_1.1.0       patchwork_1.0.1 glue_1.4.1     
 [5] TTR_0.23-6      scales_1.1.1    lubridate_1.7.9 forcats_0.5.0  
 [9] stringr_1.4.0   dplyr_1.0.0     purrr_0.3.4     readr_1.3.1    
[13] tidyr_1.1.0     tibble_3.0.3    ggplot2_3.3.2   tidyverse_1.3.0

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5       lattice_0.20-41  zoo_1.8-8        assertthat_0.2.1
 [5] rprojroot_1.3-2  digest_0.6.25    R6_2.4.1         cellranger_1.1.0
 [9] backports_1.1.8  reprex_0.3.0     evaluate_0.14    httr_1.4.1      
[13] pillar_1.4.6     rlang_0.4.7      curl_4.3         readxl_1.3.1    
[17] rstudioapi_0.11  whisker_0.4      blob_1.2.1       rmarkdown_2.3   
[21] labeling_0.3     munsell_0.5.0    broom_0.7.0      compiler_4.0.2  
[25] httpuv_1.5.4     modelr_0.1.8     xfun_0.15        pkgconfig_2.0.3 
[29] htmltools_0.5.0  tidyselect_1.1.0 workflowr_1.6.2  fansi_0.4.1     
[33] crayon_1.3.4     dbplyr_1.4.4     withr_2.2.0      later_1.1.0.1   
[37] grid_4.0.2       jsonlite_1.7.0   gtable_0.3.0     lifecycle_0.2.0 
[41] git2r_0.27.1     magrittr_1.5     cli_2.0.2        stringi_1.4.6   
[45] farver_2.0.3     fs_1.4.2         promises_1.1.1   xml2_1.3.2      
[49] ellipsis_0.3.1   xts_0.12-0       generics_0.0.2   vctrs_0.3.1     
[53] tools_4.0.2      hms_0.5.3        yaml_2.2.1       colorspace_1.4-1
[57] rvest_0.3.5      knitr_1.29       haven_2.3.1