Last updated: 2023-11-24

Checks: 2 0

Knit directory: bioinformatics_tips/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: be5acbd

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version be5acbd. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd be5acbd Dave Tang 2023-11-24 Frameworks
html 8ad9e36 Dave Tang 2023-11-24 Build site.
Rmd ba521a7 Dave Tang 2023-11-24 Computer science
html 72336b6 Dave Tang 2022-12-07 Build site.
Rmd 7ab5011 Dave Tang 2022-12-07 Implement testing
html ca74424 Dave Tang 2022-10-27 Build site.
Rmd cfb532a Dave Tang 2022-10-27 Dimension reduction
html 78910db Dave Tang 2022-04-13 Build site.
Rmd f80e28b Dave Tang 2022-04-13 Script as much as possible
html e08ce00 davetang 2020-10-14 Build site.
Rmd 805d205 davetang 2020-10-14 Probability basics
html 59d2721 davetang 2020-10-11 Build site.
Rmd bf96c95 davetang 2020-10-11 Link to data structures page
html bcfc6f4 davetang 2020-08-15 Build site.
Rmd 8d17ba8 davetang 2020-08-15 Monte Carlo simulation
html cdabe94 davetang 2020-06-21 Build site.
Rmd 2cd2092 davetang 2020-06-21 Link to queuing systems
html f851e18 davetang 2020-06-07 Build site.
Rmd a36c1e8 davetang 2020-06-07 Security basics
html b45e21b davetang 2020-05-23 Build site.
Rmd 3a4d719 davetang 2020-05-23 Workflow management system
html 17994b6 davetang 2020-05-16 Build site.
Rmd 5e7606d davetang 2020-05-16 Use APIs
html 04be0ae davetang 2020-05-09 Build site.
Rmd f8b797f davetang 2020-05-09 No TOC
html 60d127f davetang 2020-05-09 Build site.
html 169cfdf davetang 2020-05-09 Build site.
Rmd 83ae7f7 davetang 2020-05-09 Command line arguments
html 93e2a64 davetang 2020-05-09 Build site.
html 7225a50 davetang 2020-05-03 Build site.
Rmd 7d290c0 davetang 2020-05-03 Start workflowr project.